Wall clock time and date at job start Mon Mar 30 2020 06:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35709 * 117.00096 * 2 1 4 4 C 1.38047 * 118.84384 * 359.73110 * 3 2 1 5 5 C 1.39369 * 120.81556 * 179.68686 * 4 3 2 6 6 C 1.43201 * 120.41978 * 180.29586 * 5 4 3 7 7 N 5.82040 * 79.84973 * 0.02562 * 2 1 3 8 8 C 1.46297 * 119.16328 * 0.60806 * 5 4 3 9 9 C 1.39761 * 120.64148 * 179.70834 * 8 5 4 10 10 H 1.07998 * 120.00409 * 39.70086 * 9 8 5 11 11 C 1.40300 * 119.99818 * 219.70429 * 9 8 5 12 12 N 1.30680 * 120.00112 * 19.86072 * 11 9 8 13 13 Si 1.86796 * 120.00228 * 199.86664 * 11 9 8 14 14 H 1.48500 * 109.47139 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47444 * 119.99612 * 13 11 9 16 16 H 1.48498 * 109.47565 * 239.99909 * 13 11 9 17 17 C 1.48006 * 118.71212 * 359.68415 * 8 5 4 18 18 C 1.40047 * 128.86106 * 180.02562 * 17 8 5 19 19 C 1.32676 * 115.79107 * 179.97438 * 18 17 8 20 20 S 1.75479 * 110.63610 * 359.97438 * 19 18 17 21 21 C 1.39469 * 118.33579 * 0.02562 * 17 8 5 22 22 H 1.08992 * 109.47168 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47232 * 299.99730 * 1 2 3 24 24 H 1.09008 * 109.46966 * 59.99527 * 1 2 3 25 25 H 1.08001 * 119.59436 * 0.02562 * 4 3 2 26 26 H 0.97002 * 120.00382 * 183.28741 * 12 11 9 27 27 H 1.08002 * 122.10180 * 359.97438 * 18 17 8 28 28 H 1.07998 * 124.68015 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2701 2.3515 -0.0057 5 6 1.8597 3.6143 0.0006 6 6 1.0475 4.7938 0.0011 7 7 0.4032 5.7293 0.0026 8 6 3.3188 3.7199 -0.0001 9 6 3.9426 4.9706 0.0000 10 1 3.5400 5.7748 0.5979 11 6 5.0917 5.1814 -0.7768 12 7 5.3618 4.3818 -1.7745 13 14 6.2359 6.6050 -0.3848 14 1 5.7097 7.3557 0.7834 15 1 7.5885 6.0803 -0.0681 16 1 6.3188 7.5111 -1.5583 17 6 4.1216 2.4764 -0.0004 18 6 5.5144 2.3297 -0.0007 19 6 5.9634 1.0813 -0.0004 20 16 4.6273 -0.0564 0.0009 21 6 3.4494 1.2545 -0.0006 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.1935 2.2657 -0.0096 26 1 6.1804 4.4984 -2.2817 27 1 6.1810 3.1795 -0.0010 28 1 7.0070 0.8035 -0.0001 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396191454.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:35 Heat of formation + Delta-G solvation = 17.261333 kcal Electronic energy + Delta-G solvation = -16327.525160 eV Core-core repulsion = 13627.735678 eV Total energy + Delta-G solvation = -2699.789482 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.57437 -38.80764 -37.34601 -35.68590 -34.93365 -31.48977 -30.46381 -28.07016 -26.83267 -24.77157 -23.25915 -21.62816 -19.87975 -19.07128 -17.90539 -17.33642 -17.04921 -16.38173 -16.21228 -15.88128 -15.14616 -14.60679 -14.43195 -14.30064 -13.91217 -13.72555 -13.42184 -13.28899 -13.09562 -13.03137 -12.55693 -12.39271 -12.25556 -12.00056 -11.87987 -11.46659 -11.13631 -10.78781 -9.73261 -9.17586 -9.00442 -8.22295 -6.46618 -0.06715 0.45811 0.90739 1.34752 1.38742 1.43061 1.51929 1.64042 2.02295 2.13832 2.37564 2.60127 2.74673 3.38594 3.54107 4.09440 4.35207 4.49912 4.53204 4.66182 4.71266 4.83228 4.93636 4.99231 5.15176 5.26497 5.42527 5.64537 5.76074 5.90130 6.16573 6.47324 6.57630 6.81790 6.95294 8.04969 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.017956 B = 0.009945 C = 0.006622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.990383 B = 2814.945053 C = 4227.394069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.339 6.339 3 C 0.023 3.977 4 C -0.089 4.089 5 C -0.199 4.199 6 C 0.310 3.690 7 N -0.525 5.525 8 C 0.168 3.832 9 C -0.459 4.459 10 H 0.082 0.918 11 C 0.053 3.947 12 N -0.771 5.771 13 Si 0.968 3.032 14 H -0.262 1.262 15 H -0.245 1.245 16 H -0.267 1.267 17 C -0.113 4.113 18 C -0.068 4.068 19 C -0.243 4.243 20 S 0.089 5.911 21 C -0.117 4.117 22 H 0.119 0.881 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.138 0.862 26 H 0.304 0.696 27 H 0.130 0.870 28 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.612 -7.203 1.695 7.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.254 6.254 3 C -0.026 4.026 4 C -0.113 4.113 5 C -0.208 4.208 6 C 0.002 3.998 7 N -0.206 5.206 8 C 0.160 3.840 9 C -0.486 4.486 10 H 0.100 0.900 11 C -0.170 4.170 12 N -0.393 5.393 13 Si 0.788 3.212 14 H -0.186 1.186 15 H -0.169 1.169 16 H -0.191 1.191 17 C -0.122 4.122 18 C -0.098 4.098 19 C -0.376 4.376 20 S 0.352 5.648 21 C -0.234 4.234 22 H 0.137 0.863 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.155 0.845 26 H 0.116 0.884 27 H 0.147 0.853 28 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 1.851 -7.599 1.454 7.956 hybrid contribution 0.408 2.092 -0.098 2.134 sum 2.259 -5.507 1.357 6.105 Atomic orbital electron populations 1.23155 0.77756 1.04805 1.01325 1.85870 1.22244 1.26454 1.90882 1.17266 0.88536 0.84364 1.12417 1.20484 0.98850 0.89810 1.02169 1.16453 0.90365 0.86739 1.27265 1.25631 0.91212 0.92219 0.90753 1.80999 1.12177 1.11023 1.16376 1.19436 0.88241 0.91623 0.84674 1.19616 1.09348 0.97103 1.22534 0.90027 1.26643 0.97899 1.00153 0.92273 1.69773 1.23498 1.35179 1.10818 0.85348 0.78496 0.77788 0.79601 1.18618 1.16890 1.19133 1.19076 0.92924 0.91112 1.09131 1.19769 0.93734 0.97216 0.99048 1.25328 1.02994 0.95318 1.13995 1.83463 0.94925 1.07962 1.78462 1.22169 0.94999 0.97277 1.08952 0.86272 0.92668 0.92977 0.84482 0.88409 0.85277 0.79749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.77 113.37 1.11 1.73 15 2 O -0.34 -12.22 10.40 -90.30 -0.94 -13.16 15 3 C 0.02 0.94 6.70 22.78 0.15 1.09 15 4 C -0.09 -3.68 8.65 22.50 0.19 -3.48 15 5 C -0.20 -9.30 5.93 -19.66 -0.12 -9.42 15 6 C 0.31 14.71 14.48 88.33 1.28 15.99 15 7 N -0.53 -25.39 18.54 19.00 0.35 -25.03 15 8 C 0.17 8.22 5.66 -18.22 -0.10 8.12 15 9 C -0.46 -22.25 8.19 23.14 0.19 -22.06 15 10 H 0.08 4.04 7.75 -2.91 -0.02 4.01 15 11 C 0.05 2.34 3.86 85.37 0.33 2.67 15 12 N -0.77 -34.50 10.82 21.89 0.24 -34.26 15 13 Si 0.97 33.51 29.61 68.60 2.03 35.54 15 14 H -0.26 -9.37 7.11 99.48 0.71 -8.66 15 15 H -0.25 -7.72 7.11 99.48 0.71 -7.02 15 16 H -0.27 -9.10 7.11 99.48 0.71 -8.39 15 17 C -0.11 -5.22 5.51 -19.95 -0.11 -5.33 15 18 C -0.07 -2.82 8.26 21.54 0.18 -2.64 15 19 C -0.24 -8.50 11.11 66.65 0.74 -7.76 15 20 S 0.09 3.20 23.24 -56.49 -1.31 1.89 15 21 C -0.12 -5.09 6.42 23.12 0.15 -4.94 15 22 H 0.12 2.25 8.14 -2.39 -0.02 2.23 15 23 H 0.05 1.33 7.60 -2.39 -0.02 1.31 15 24 H 0.05 1.29 7.58 -2.38 -0.02 1.27 15 25 H 0.14 4.80 6.06 -2.91 -0.02 4.78 15 26 H 0.30 12.00 8.30 -92.71 -0.77 11.23 15 27 H 0.13 5.29 6.07 -2.91 -0.02 5.28 15 28 H 0.19 5.03 8.06 -2.91 -0.02 5.00 15 Total: -1.00 -55.60 268.01 5.57 -50.03 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.21 Total: 11.05 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 3.99 Total: -26.05 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: 0.59 Total: -59.30 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.94 Total: -13.16 kcal Atomic # 14 Polarization: 33.51 SS G_CDS: 2.03 Total: 35.54 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -1.31 Total: 1.89 kcal Total: -55.60 5.57 -50.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396191454.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.288 kcal (2) G-P(sol) polarization free energy of solvation -55.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds