Wall clock time and date at job start Mon Mar 30 2020 06:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35614 * 116.99493 * 2 1 4 4 C 1.37580 * 122.62759 * 90.03025 * 3 2 1 5 5 C 1.39655 * 124.81389 * 359.93648 * 4 3 2 6 6 H 1.07999 * 120.00210 * 0.02562 * 5 4 3 7 7 C 1.40050 * 119.99808 * 179.97438 * 5 4 3 8 8 N 1.30905 * 120.00046 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00158 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47057 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46785 * 120.00534 * 9 7 5 12 12 H 1.48497 * 109.47025 * 240.00334 * 9 7 5 13 13 S 1.75398 * 110.36513 * 180.20484 * 4 3 2 14 14 C 1.76045 * 91.95233 * 359.69861 * 13 4 3 15 15 C 1.39897 * 129.88983 * 180.02562 * 14 13 4 16 16 C 1.37220 * 120.68985 * 180.30100 * 15 14 13 17 17 C 1.40322 * 120.05865 * 0.02562 * 16 15 14 18 18 C 1.43190 * 119.94721 * 179.97438 * 17 16 15 19 19 N 6.23005 * 97.09526 * 284.21038 * 2 1 3 20 20 C 1.38572 * 120.10137 * 359.97438 * 17 16 15 21 21 C 1.40313 * 110.06528 * 0.30034 * 14 13 4 22 22 H 1.09003 * 109.47460 * 299.99570 * 1 2 3 23 23 H 1.08996 * 109.47694 * 59.99613 * 1 2 3 24 24 H 1.09001 * 109.46899 * 180.02562 * 1 2 3 25 25 H 0.97000 * 120.00675 * 179.97438 * 8 7 5 26 26 H 1.08005 * 119.65862 * 0.32267 * 15 14 13 27 27 H 1.07996 * 119.97485 * 179.97438 * 16 15 14 28 28 H 1.07996 * 119.86546 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 6 2.3818 1.8691 1.1587 5 6 2.1381 1.3920 2.4484 6 1 1.6515 0.4380 2.5883 7 6 2.5257 2.1501 3.5603 8 7 3.1160 3.3061 3.3907 9 14 2.1992 1.5123 5.2854 10 1 1.5244 0.1919 5.2055 11 1 3.4865 1.3669 6.0112 12 1 1.3275 2.4711 6.0108 13 16 3.1544 3.3991 0.7862 14 6 3.0167 3.1156 -0.9459 15 6 3.4229 3.9137 -2.0207 16 6 3.2140 3.5058 -3.3141 17 6 2.5868 2.2771 -3.5710 18 6 2.3696 1.8541 -4.9216 19 7 2.1985 1.5177 -5.9932 20 6 2.1773 1.4726 -2.5196 21 6 2.3885 1.8837 -1.1836 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.3842 3.8315 4.1608 26 1 3.9062 4.8607 -1.8305 27 1 3.5319 4.1313 -4.1351 28 1 1.6954 0.5275 -2.7217 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396192071.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:27 Heat of formation + Delta-G solvation = 5.464161 kcal Electronic energy + Delta-G solvation = -15964.573388 eV Core-core repulsion = 13264.272343 eV Total energy + Delta-G solvation = -2700.301045 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.84102 -37.17881 -35.80943 -34.70510 -32.64985 -30.27933 -29.41150 -26.55457 -25.21778 -23.24614 -21.79978 -20.05796 -18.20162 -17.62329 -16.30773 -15.97006 -14.86963 -14.61185 -14.47260 -14.14684 -13.53287 -13.44660 -13.32941 -12.67022 -12.63686 -12.23310 -12.19175 -11.93676 -11.72315 -11.53567 -11.12405 -10.68500 -10.64367 -10.48034 -10.23868 -9.49998 -9.41913 -8.72102 -8.62496 -7.71381 -7.41705 -6.58485 -4.85879 1.51543 1.82452 2.63047 2.74296 2.83024 2.95457 3.10730 3.15346 3.39197 3.54505 3.60399 4.44205 4.48788 4.64731 5.33802 5.58494 5.68397 6.09847 6.15610 6.17943 6.32615 6.35375 6.45212 6.46062 6.79933 6.85848 7.04589 7.22205 7.32836 7.55019 7.75442 7.83144 7.94013 8.17257 8.90358 9.40662 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.032539 B = 0.006456 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.291002 B = 4335.700172 C = 5124.539385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.298 6.298 3 C -0.164 4.164 4 C 0.031 3.969 5 C -0.354 4.354 6 H 0.106 0.894 7 C 0.050 3.950 8 N -0.768 5.768 9 Si 0.941 3.059 10 H -0.253 1.253 11 H -0.265 1.265 12 H -0.266 1.266 13 S 0.175 5.825 14 C -0.239 4.239 15 C -0.053 4.053 16 C -0.148 4.148 17 C -0.034 4.034 18 C 0.276 3.724 19 N -0.459 5.459 20 C -0.080 4.080 21 C 0.001 3.999 22 H 0.034 0.966 23 H 0.026 0.974 24 H 0.068 0.932 25 H 0.305 0.695 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.701 1.738 2.401 3.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.214 6.214 3 C -0.213 4.213 4 C -0.089 4.089 5 C -0.387 4.387 6 H 0.124 0.876 7 C -0.173 4.173 8 N -0.393 5.393 9 Si 0.763 3.237 10 H -0.176 1.176 11 H -0.190 1.190 12 H -0.191 1.191 13 S 0.436 5.564 14 C -0.355 4.355 15 C -0.076 4.076 16 C -0.171 4.171 17 C -0.040 4.040 18 C -0.037 4.037 19 N -0.135 5.135 20 C -0.103 4.103 21 C -0.007 4.007 22 H 0.053 0.947 23 H 0.045 0.955 24 H 0.087 0.913 25 H 0.119 0.881 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.212 2.368 1.765 2.961 hybrid contribution -0.883 -1.012 0.242 1.365 sum -1.096 1.356 2.007 2.659 Atomic orbital electron populations 1.22923 0.84947 1.00241 0.99266 1.86117 1.16447 1.25034 1.93786 1.16990 1.20046 0.95224 0.89057 1.21696 0.95938 0.95070 0.96194 1.19369 1.26933 1.04139 0.88297 0.87588 1.26430 0.92723 0.94011 1.04099 1.68613 1.25703 1.09778 1.35256 0.85649 0.79637 0.80437 0.77945 1.17611 1.18962 1.19063 1.84953 1.63100 1.18852 0.89517 1.23716 1.09677 0.99263 1.02825 1.20063 0.98971 0.98044 0.90495 1.20376 1.04702 0.95712 0.96268 1.15611 1.06807 0.97321 0.84261 1.26056 0.92370 0.92416 0.92907 1.81137 1.10766 1.09538 1.12106 1.20754 1.00759 0.98475 0.90347 1.17895 0.97194 0.93092 0.92565 0.94701 0.95517 0.91346 0.88138 0.86740 0.86691 0.86739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 11.13 101.05 1.12 1.53 15 2 O -0.30 -6.78 10.06 -18.54 -0.19 -6.97 15 3 C -0.16 -3.87 5.87 -38.95 -0.23 -4.10 15 4 C 0.03 0.75 6.12 -39.29 -0.24 0.51 15 5 C -0.35 -8.11 9.08 -38.37 -0.35 -8.45 15 6 H 0.11 2.39 7.71 -52.49 -0.40 1.98 15 7 C 0.05 1.04 5.50 -17.27 -0.09 0.94 15 8 N -0.77 -16.15 10.57 55.56 0.59 -15.56 15 9 Si 0.94 15.60 29.56 -169.99 -5.03 10.57 15 10 H -0.25 -4.21 7.11 56.52 0.40 -3.81 15 11 H -0.26 -4.33 7.11 56.52 0.40 -3.93 15 12 H -0.27 -4.32 7.11 56.52 0.40 -3.91 15 13 S 0.17 3.82 20.10 -107.50 -2.16 1.66 15 14 C -0.24 -5.06 6.47 -38.18 -0.25 -5.31 15 15 C -0.05 -0.96 10.03 -39.33 -0.39 -1.36 15 16 C -0.15 -2.53 9.74 -39.17 -0.38 -2.91 15 17 C -0.03 -0.62 5.72 -107.07 -0.61 -1.23 15 18 C 0.28 5.01 15.31 -22.47 -0.34 4.66 15 19 N -0.46 -8.73 18.54 41.84 0.78 -7.96 15 20 C -0.08 -1.62 9.69 -38.27 -0.37 -1.99 15 21 C 0.00 0.02 5.85 -107.06 -0.63 -0.61 15 22 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 23 H 0.03 0.48 8.14 -51.93 -0.42 0.06 15 24 H 0.07 1.08 8.14 -51.93 -0.42 0.65 15 25 H 0.31 5.67 8.30 -40.82 -0.34 5.33 15 26 H 0.11 1.78 8.06 -52.48 -0.42 1.35 15 27 H 0.12 1.66 8.06 -52.49 -0.42 1.24 15 28 H 0.11 2.21 8.06 -52.49 -0.42 1.79 15 LS Contribution 275.26 15.07 4.15 4.15 Total: -1.00 -24.74 275.26 -6.70 -31.44 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -2.08 Total: 0.98 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -2.76 Total: -18.31 kcal Atomic # 7 Polarization: -24.88 SS G_CDS: 1.36 Total: -23.52 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.19 Total: -6.97 kcal Atomic # 14 Polarization: 15.60 SS G_CDS: -5.03 Total: 10.57 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -2.16 Total: 1.66 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -24.74 -6.70 -31.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396192071.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.907 kcal (2) G-P(sol) polarization free energy of solvation -24.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds