Wall clock time and date at job start Mon Mar 30 2020 06:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35614 * 116.99493 * 2 1 4 4 C 1.37580 * 122.62759 * 90.03025 * 3 2 1 5 5 C 1.39655 * 124.81389 * 359.93648 * 4 3 2 6 6 H 1.07999 * 120.00210 * 0.02562 * 5 4 3 7 7 C 1.40050 * 119.99808 * 179.97438 * 5 4 3 8 8 N 1.30905 * 120.00046 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00158 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47057 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46785 * 120.00534 * 9 7 5 12 12 H 1.48497 * 109.47025 * 240.00334 * 9 7 5 13 13 S 1.75398 * 110.36513 * 180.20484 * 4 3 2 14 14 C 1.76045 * 91.95233 * 359.69861 * 13 4 3 15 15 C 1.39897 * 129.88983 * 180.02562 * 14 13 4 16 16 C 1.37220 * 120.68985 * 180.30100 * 15 14 13 17 17 C 1.40322 * 120.05865 * 0.02562 * 16 15 14 18 18 C 1.43190 * 119.94721 * 179.97438 * 17 16 15 19 19 N 6.23005 * 97.09526 * 284.21038 * 2 1 3 20 20 C 1.38572 * 120.10137 * 359.97438 * 17 16 15 21 21 C 1.40313 * 110.06528 * 0.30034 * 14 13 4 22 22 H 1.09003 * 109.47460 * 299.99570 * 1 2 3 23 23 H 1.08996 * 109.47694 * 59.99613 * 1 2 3 24 24 H 1.09001 * 109.46899 * 180.02562 * 1 2 3 25 25 H 0.97000 * 120.00675 * 179.97438 * 8 7 5 26 26 H 1.08005 * 119.65862 * 0.32267 * 15 14 13 27 27 H 1.07996 * 119.97485 * 179.97438 * 16 15 14 28 28 H 1.07996 * 119.86546 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 6 2.3818 1.8691 1.1587 5 6 2.1381 1.3920 2.4484 6 1 1.6515 0.4380 2.5883 7 6 2.5257 2.1501 3.5603 8 7 3.1160 3.3061 3.3907 9 14 2.1992 1.5123 5.2854 10 1 1.5244 0.1919 5.2055 11 1 3.4865 1.3669 6.0112 12 1 1.3275 2.4711 6.0108 13 16 3.1544 3.3991 0.7862 14 6 3.0167 3.1156 -0.9459 15 6 3.4229 3.9137 -2.0207 16 6 3.2140 3.5058 -3.3141 17 6 2.5868 2.2771 -3.5710 18 6 2.3696 1.8541 -4.9216 19 7 2.1985 1.5177 -5.9932 20 6 2.1773 1.4726 -2.5196 21 6 2.3885 1.8837 -1.1836 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.3842 3.8315 4.1608 26 1 3.9062 4.8607 -1.8305 27 1 3.5319 4.1313 -4.1351 28 1 1.6954 0.5275 -2.7217 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396192071.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:27 Heat of formation + Delta-G solvation = -5.906626 kcal Electronic energy + Delta-G solvation = -15965.066462 eV Core-core repulsion = 13264.272343 eV Total energy + Delta-G solvation = -2700.794120 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.42222 -38.77407 -37.33297 -36.31214 -34.23713 -31.79679 -31.02455 -28.11945 -26.81284 -24.79053 -23.36432 -21.64458 -19.84174 -19.17253 -17.89787 -17.56836 -16.42233 -16.13506 -16.03044 -15.69288 -15.08267 -14.94598 -14.77583 -14.21238 -14.14693 -13.75970 -13.74059 -13.44080 -13.14611 -13.09843 -12.64846 -12.19092 -12.04240 -11.95843 -11.78739 -11.14067 -10.97995 -10.37281 -10.18621 -9.33604 -8.97011 -8.22908 -6.53368 -0.02183 0.26464 1.21127 1.31708 1.37321 1.55533 1.63397 1.68603 1.80849 2.05623 2.13160 2.83356 2.97670 3.10072 3.73285 4.10665 4.28639 4.58954 4.66196 4.70577 4.81045 4.85486 4.89195 4.92001 5.25339 5.34951 5.52860 5.65581 5.69380 5.97541 6.10560 6.20976 6.46374 6.52709 7.24181 7.89173 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.032539 B = 0.006456 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.291002 B = 4335.700172 C = 5124.539385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.319 6.319 3 C -0.191 4.191 4 C 0.000 4.000 5 C -0.384 4.384 6 H 0.097 0.903 7 C 0.020 3.980 8 N -0.787 5.787 9 Si 1.007 2.993 10 H -0.258 1.258 11 H -0.257 1.257 12 H -0.256 1.256 13 S 0.172 5.828 14 C -0.250 4.250 15 C -0.054 4.054 16 C -0.127 4.127 17 C -0.028 4.028 18 C 0.291 3.709 19 N -0.470 5.470 20 C -0.090 4.090 21 C -0.024 4.024 22 H 0.027 0.973 23 H 0.028 0.972 24 H 0.098 0.902 25 H 0.317 0.683 26 H 0.146 0.854 27 H 0.153 0.847 28 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.415 2.598 1.996 3.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.236 6.236 3 C -0.240 4.240 4 C -0.119 4.119 5 C -0.417 4.417 6 H 0.115 0.885 7 C -0.200 4.200 8 N -0.413 5.413 9 Si 0.826 3.174 10 H -0.181 1.181 11 H -0.181 1.181 12 H -0.180 1.180 13 S 0.432 5.568 14 C -0.366 4.366 15 C -0.076 4.076 16 C -0.150 4.150 17 C -0.034 4.034 18 C -0.023 4.023 19 N -0.146 5.146 20 C -0.113 4.113 21 C -0.032 4.032 22 H 0.046 0.954 23 H 0.047 0.953 24 H 0.116 0.884 25 H 0.131 0.869 26 H 0.163 0.837 27 H 0.171 0.829 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.076 3.238 1.340 3.505 hybrid contribution -0.967 -1.252 0.196 1.594 sum -0.892 1.987 1.536 2.665 Atomic orbital electron populations 1.23030 0.83121 1.02111 0.98967 1.86016 1.18326 1.25288 1.93920 1.17291 1.21298 0.95653 0.89783 1.22020 0.96899 0.96185 0.96842 1.19515 1.28503 1.04573 0.89140 0.88500 1.27209 0.91928 0.93904 1.06983 1.68608 1.25575 1.10352 1.36806 0.84708 0.79738 0.79637 0.73326 1.18114 1.18111 1.17988 1.84657 1.63349 1.18263 0.90509 1.23982 1.09936 0.99541 1.03145 1.20445 0.98443 0.98786 0.89938 1.20810 1.02195 0.94988 0.96975 1.15656 1.06335 0.97564 0.83807 1.25834 0.91952 0.92004 0.92510 1.81166 1.11066 1.09827 1.12548 1.20774 1.01397 0.98994 0.90103 1.18060 0.98260 0.93832 0.93010 0.95441 0.95304 0.88365 0.86948 0.83655 0.82888 0.86768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.87 11.13 113.37 1.26 2.13 15 2 O -0.32 -14.98 10.06 -89.26 -0.90 -15.87 15 3 C -0.19 -9.31 5.87 22.68 0.13 -9.18 15 4 C 0.00 0.02 6.12 22.46 0.14 0.16 15 5 C -0.38 -18.22 9.08 23.05 0.21 -18.01 15 6 H 0.10 4.58 7.71 -2.91 -0.02 4.56 15 7 C 0.02 0.83 5.50 85.27 0.47 1.30 15 8 N -0.79 -33.25 10.57 21.86 0.23 -33.02 15 9 Si 1.01 31.61 29.56 68.60 2.03 33.64 15 10 H -0.26 -8.18 7.11 99.48 0.71 -7.47 15 11 H -0.26 -7.68 7.11 99.48 0.71 -6.98 15 12 H -0.26 -7.56 7.11 99.48 0.71 -6.85 15 13 S 0.17 7.59 20.10 -56.49 -1.14 6.45 15 14 C -0.25 -10.46 6.47 23.18 0.15 -10.31 15 15 C -0.05 -1.81 10.03 22.43 0.23 -1.58 15 16 C -0.13 -3.89 9.74 22.54 0.22 -3.67 15 17 C -0.03 -0.95 5.72 -21.45 -0.12 -1.07 15 18 C 0.29 9.83 15.31 88.33 1.35 11.18 15 19 N -0.47 -16.81 18.54 19.00 0.35 -16.46 15 20 C -0.09 -3.56 9.69 23.12 0.22 -3.34 15 21 C -0.02 -1.06 5.85 -21.44 -0.13 -1.19 15 22 H 0.03 1.05 8.14 -2.39 -0.02 1.03 15 23 H 0.03 1.05 8.14 -2.39 -0.02 1.03 15 24 H 0.10 3.05 8.14 -2.39 -0.02 3.03 15 25 H 0.32 11.61 8.30 -92.71 -0.77 10.84 15 26 H 0.15 3.97 8.06 -2.91 -0.02 3.94 15 27 H 0.15 3.60 8.06 -2.91 -0.02 3.58 15 28 H 0.11 4.43 8.06 -2.91 -0.02 4.41 15 Total: -1.00 -53.62 275.26 5.91 -47.71 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 1.20 Total: 11.11 kcal Atomic # 6 Polarization: -37.71 SS G_CDS: 4.13 Total: -33.57 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: 0.58 Total: -49.47 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.90 Total: -15.87 kcal Atomic # 14 Polarization: 31.61 SS G_CDS: 2.03 Total: 33.64 kcal Atomic # 16 Polarization: 7.59 SS G_CDS: -1.14 Total: 6.45 kcal Total: -53.62 5.91 -47.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396192071.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.807 kcal (2) G-P(sol) polarization free energy of solvation -53.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds