Wall clock time and date at job start Mon Mar 30 2020 06:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35838 * 116.99764 * 2 1 4 4 C 1.36024 * 119.83052 * 0.02562 * 3 2 1 5 5 C 1.42067 * 120.67300 * 180.02562 * 4 3 2 6 6 C 1.39538 * 128.25607 * 180.26175 * 5 4 3 7 7 C 1.37125 * 115.08573 * 180.22201 * 6 5 4 8 8 C 1.39781 * 124.82705 * 179.78947 * 7 6 5 9 9 H 1.07997 * 119.99946 * 10.43011 * 8 7 6 10 10 C 1.40310 * 119.99992 * 190.43168 * 8 7 6 11 11 N 1.30678 * 119.99851 * 174.69231 * 10 8 7 12 12 Si 1.86798 * 120.00083 * 354.69275 * 10 8 7 13 13 H 1.48497 * 109.47237 * 179.97438 * 12 10 8 14 14 H 1.48505 * 109.47172 * 299.99954 * 12 10 8 15 15 H 1.48501 * 109.46892 * 59.99883 * 12 10 8 16 16 S 1.75446 * 110.34259 * 359.52410 * 7 6 5 17 17 C 1.40630 * 118.89100 * 359.97438 * 5 4 3 18 18 C 1.39097 * 120.01444 * 359.97438 * 17 5 4 19 19 C 1.39348 * 120.25429 * 0.04295 * 18 17 5 20 20 C 1.43196 * 120.08801 * 179.97438 * 19 18 17 21 21 N 3.52920 * 165.62787 * 180.02562 * 2 1 3 22 22 H 1.08998 * 109.46737 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46517 * 299.99592 * 1 2 3 24 24 H 1.08997 * 109.47038 * 59.99603 * 1 2 3 25 25 H 1.07999 * 119.66078 * 0.02562 * 4 3 2 26 26 H 1.07999 * 122.45711 * 0.02562 * 6 5 4 27 27 H 0.96997 * 120.00342 * 359.93580 * 11 10 8 28 28 H 1.07998 * 119.87176 * 179.97438 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.3014 2.3489 0.0005 5 6 1.9276 3.6241 0.0000 6 6 1.3250 4.8826 0.0054 7 6 2.1939 5.9434 -0.0015 8 6 1.8122 7.2881 -0.0022 9 1 0.7808 7.5567 0.1723 10 6 2.7690 8.2888 -0.2295 11 7 2.3967 9.5372 -0.3334 12 14 4.5749 7.8368 -0.3837 13 1 5.3743 9.0656 -0.6204 14 1 5.0303 7.1831 0.8696 15 1 4.7556 6.9021 -1.5234 16 16 3.8530 5.3727 -0.0019 17 6 3.3323 3.6912 -0.0005 18 6 4.0848 2.5214 0.0000 19 6 3.4523 1.2797 0.0002 20 6 4.2304 0.0777 0.0002 21 7 4.8478 -0.8760 -0.0004 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 0.2234 2.2828 0.0014 26 1 0.2527 5.0118 0.0113 27 1 1.4589 9.7718 -0.2543 28 1 5.1634 2.5756 -0.0008 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396192758.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:16 Heat of formation + Delta-G solvation = 4.181861 kcal Electronic energy + Delta-G solvation = -15785.928976 eV Core-core repulsion = 13085.572326 eV Total energy + Delta-G solvation = -2700.356650 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.71184 -37.38909 -36.03689 -35.02050 -33.23462 -30.08823 -29.58993 -27.35977 -25.81912 -22.57894 -21.86753 -19.64899 -19.25281 -18.67603 -16.82654 -15.94082 -15.65279 -15.46930 -14.97840 -14.00409 -13.74799 -13.43372 -13.34430 -13.04696 -12.81011 -12.70178 -12.17534 -11.88534 -11.76262 -11.72478 -11.33674 -11.07931 -10.84511 -10.50640 -10.33686 -10.07210 -9.55729 -9.02733 -8.65417 -8.08448 -7.69661 -6.76440 -5.06530 1.29351 2.07891 2.22184 2.66902 2.80421 2.91768 3.06155 3.27552 3.42692 3.58892 3.60743 3.79511 4.39734 4.70918 4.71315 5.22460 5.35487 5.40252 5.60273 5.82825 5.97240 6.13792 6.51196 6.60088 6.66564 6.73457 6.88028 6.99291 7.12229 7.39568 7.50939 7.68988 7.85697 7.95807 8.20126 9.26653 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.033473 B = 0.006264 C = 0.005300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.302955 B = 4469.098993 C = 5281.814878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C 0.192 3.808 4 C -0.260 4.260 5 C 0.088 3.912 6 C -0.361 4.361 7 C 0.069 3.931 8 C -0.402 4.402 9 H 0.103 0.897 10 C 0.046 3.954 11 N -0.764 5.764 12 Si 0.915 3.085 13 H -0.221 1.221 14 H -0.197 1.197 15 H -0.194 1.194 16 S -0.023 6.023 17 C -0.255 4.255 18 C 0.040 3.960 19 C -0.157 4.157 20 C 0.291 3.709 21 N -0.476 5.476 22 H 0.092 0.908 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.121 0.879 26 H 0.115 0.885 27 H 0.297 0.703 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.551 -3.187 0.102 3.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.143 3.857 4 C -0.281 4.281 5 C 0.081 3.919 6 C -0.384 4.384 7 C -0.049 4.049 8 C -0.436 4.436 9 H 0.121 0.879 10 C -0.181 4.181 11 N -0.383 5.383 12 Si 0.736 3.264 13 H -0.144 1.144 14 H -0.123 1.123 15 H -0.118 1.118 16 S 0.231 5.769 17 C -0.367 4.367 18 C 0.015 3.985 19 C -0.164 4.164 20 C -0.021 4.021 21 N -0.153 5.153 22 H 0.111 0.889 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.138 0.862 26 H 0.133 0.867 27 H 0.110 0.890 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.206 -3.428 -0.156 4.080 hybrid contribution -3.707 -0.584 0.288 3.764 sum -1.501 -4.012 0.132 4.286 Atomic orbital electron populations 1.22978 0.78843 1.03100 1.01594 1.86027 1.21102 1.27691 1.88746 1.17971 0.89980 0.83806 0.93938 1.20307 0.98763 0.90452 1.18537 1.17842 0.91020 0.92881 0.90171 1.19577 0.98473 0.89317 1.31078 1.21365 0.92372 0.96827 0.94348 1.20692 0.98942 0.89984 1.33938 0.87943 1.27608 1.07788 0.92133 0.90617 1.70503 1.22697 1.18663 1.26424 0.84587 0.73571 0.82771 0.85482 1.14430 1.12278 1.11836 1.84635 1.09508 0.98828 1.83927 1.22415 0.96367 0.97207 1.20677 1.19994 0.98039 0.88303 0.92212 1.14590 0.87904 0.87230 1.26642 1.25469 0.92416 0.92448 0.91804 1.81098 1.10055 1.10711 1.13476 0.88924 0.92630 0.92616 0.86165 0.86668 0.89013 0.86040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.80 101.05 0.99 1.35 15 2 O -0.32 -5.45 9.92 -19.23 -0.19 -5.64 15 3 C 0.19 3.54 6.64 -39.40 -0.26 3.28 15 4 C -0.26 -4.86 9.03 -38.91 -0.35 -5.21 15 5 C 0.09 1.86 5.85 -107.04 -0.63 1.23 15 6 C -0.36 -7.93 10.13 -39.50 -0.40 -8.33 15 7 C 0.07 1.55 5.95 -39.41 -0.23 1.31 15 8 C -0.40 -9.04 9.70 -38.23 -0.37 -9.41 15 9 H 0.10 2.31 8.06 -52.49 -0.42 1.89 15 10 C 0.05 1.00 5.52 -17.26 -0.10 0.90 15 11 N -0.76 -16.87 13.65 55.57 0.76 -16.11 15 12 Si 0.91 16.81 24.49 -169.99 -4.16 12.65 15 13 H -0.22 -3.87 7.11 56.52 0.40 -3.46 15 14 H -0.20 -3.45 6.31 60.16 0.38 -3.07 15 15 H -0.19 -3.44 6.34 59.33 0.38 -3.07 15 16 S -0.02 -0.47 15.30 -107.50 -1.64 -2.11 15 17 C -0.26 -5.25 6.45 -38.36 -0.25 -5.50 15 18 C 0.04 0.74 9.76 -38.85 -0.38 0.36 15 19 C -0.16 -2.96 5.76 -106.58 -0.61 -3.57 15 20 C 0.29 5.59 14.85 -22.47 -0.33 5.25 15 21 N -0.48 -9.58 18.54 41.84 0.78 -8.81 15 22 H 0.09 0.88 8.14 -51.93 -0.42 0.46 15 23 H 0.06 0.63 7.63 -51.93 -0.40 0.23 15 24 H 0.06 0.63 7.63 -51.93 -0.40 0.23 15 25 H 0.12 1.98 6.15 -52.49 -0.32 1.65 15 26 H 0.12 2.43 8.06 -52.49 -0.42 2.00 15 27 H 0.30 6.26 8.72 -40.82 -0.36 5.91 15 28 H 0.12 1.97 8.06 -52.49 -0.42 1.55 15 LS Contribution 263.55 15.07 3.97 3.97 Total: -1.00 -24.61 263.55 -5.42 -30.03 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -2.01 Total: 4.33 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -2.92 Total: -18.32 kcal Atomic # 7 Polarization: -26.45 SS G_CDS: 1.53 Total: -24.92 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.19 Total: -5.64 kcal Atomic # 14 Polarization: 16.81 SS G_CDS: -4.16 Total: 12.65 kcal Atomic # 16 Polarization: -0.47 SS G_CDS: -1.64 Total: -2.11 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -24.61 -5.42 -30.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396192758.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.213 kcal (2) G-P(sol) polarization free energy of solvation -24.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds