Wall clock time and date at job start Mon Mar 30 2020 06:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35168 * 116.99955 * 2 1 4 4 S 1.69976 * 124.07514 * 0.61221 * 3 2 1 5 5 C 1.75791 * 93.28492 * 179.97438 * 4 3 2 6 6 C 1.39314 * 130.01666 * 179.36904 * 5 4 3 7 7 C 1.39257 * 120.14554 * 179.97438 * 6 5 4 8 8 C 1.43200 * 120.06998 * 179.97438 * 7 6 5 9 9 N 8.65789 * 110.99165 * 359.85839 * 2 1 3 10 10 C 1.40115 * 119.85714 * 359.97438 * 7 6 5 11 11 C 1.36001 * 120.21614 * 0.02562 * 10 7 6 12 12 C 1.39644 * 110.32435 * 359.62166 * 5 4 3 13 13 C 1.37559 * 124.08152 * 180.02562 * 3 2 1 14 14 C 1.40695 * 123.35368 * 359.97438 * 13 3 2 15 15 H 1.07997 * 119.99699 * 213.93354 * 14 13 3 16 16 C 1.39587 * 119.99871 * 33.93707 * 14 13 3 17 17 N 1.31225 * 120.00019 * 20.65245 * 16 14 13 18 18 Si 1.86800 * 119.99729 * 200.65538 * 16 14 13 19 19 H 1.48501 * 109.46944 * 89.99911 * 18 16 14 20 20 H 1.48497 * 109.47067 * 209.99919 * 18 16 14 21 21 H 1.48501 * 109.46934 * 330.00128 * 18 16 14 22 22 H 1.09007 * 109.47264 * 299.99294 * 1 2 3 23 23 H 1.08994 * 109.47647 * 60.00042 * 1 2 3 24 24 H 1.09004 * 109.47060 * 179.97438 * 1 2 3 25 25 H 1.07999 * 119.92136 * 359.95099 * 6 5 4 26 26 H 1.07998 * 119.89554 * 180.02562 * 10 7 6 27 27 H 1.07998 * 119.67214 * 179.97438 * 11 10 7 28 28 H 0.97000 * 119.99958 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0426 1.2044 0.0000 4 16 1.2206 2.6920 0.0150 5 6 2.7079 3.6291 0.0062 6 6 2.8971 5.0093 -0.0003 7 6 4.1851 5.5386 -0.0062 8 6 4.3777 6.9576 -0.0134 9 7 4.5305 8.0833 -0.0200 10 6 5.2922 4.6798 -0.0051 11 6 5.1127 3.3317 0.0013 12 6 3.8163 2.7797 0.0004 13 6 3.4077 1.3740 -0.0005 14 6 4.3202 0.3031 -0.0006 15 1 5.2613 0.3956 0.5212 16 6 4.0093 -0.8788 -0.6751 17 7 3.1002 -0.8745 -1.6214 18 14 4.8873 -2.4665 -0.2305 19 1 4.1303 -3.1687 0.8367 20 1 4.9739 -3.3370 -1.4305 21 1 6.2557 -2.1560 0.2556 22 1 -0.3634 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 2.0429 5.6701 -0.0011 26 1 6.2914 5.0896 -0.0092 27 1 5.9722 2.6779 0.0017 28 1 2.8844 -1.6957 -2.0903 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396192768.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:33 Heat of formation + Delta-G solvation = 21.463277 kcal Electronic energy + Delta-G solvation = -16051.961878 eV Core-core repulsion = 13352.354606 eV Total energy + Delta-G solvation = -2699.607272 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.43316 -39.12549 -37.60257 -35.89455 -33.99704 -32.00276 -30.24841 -28.14218 -27.13644 -24.56295 -23.43171 -21.75636 -20.16302 -18.84770 -18.42748 -16.94280 -16.60188 -16.20885 -16.10402 -15.84833 -15.07519 -15.03921 -14.79639 -14.17293 -14.01793 -13.91127 -13.75888 -13.21872 -13.17664 -12.77144 -12.56606 -12.45506 -12.25227 -11.97777 -11.62573 -11.10955 -11.05357 -10.78122 -10.11210 -8.84451 -8.53166 -8.21866 -6.00373 -0.29735 0.42556 0.83903 1.30989 1.40034 1.47112 1.55702 1.65099 1.69177 2.25672 2.37453 2.93209 2.95272 3.05490 3.41761 3.96868 4.21651 4.38518 4.43444 4.45862 4.55553 4.69428 4.80492 5.00337 5.30843 5.36512 5.41191 5.55232 5.87492 5.95112 6.49171 6.52777 6.70739 7.12512 7.22958 8.61897 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.024937 B = 0.007168 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.578639 B = 3905.092544 C = 4897.569942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.268 6.268 3 C -0.136 4.136 4 S 0.072 5.928 5 C -0.176 4.176 6 C -0.016 4.016 7 C -0.047 4.047 8 C 0.294 3.706 9 N -0.465 5.465 10 C -0.068 4.068 11 C -0.088 4.088 12 C -0.032 4.032 13 C 0.003 3.997 14 C -0.473 4.473 15 H 0.074 0.926 16 C 0.043 3.957 17 N -0.807 5.807 18 Si 0.962 3.038 19 H -0.276 1.276 20 H -0.278 1.278 21 H -0.259 1.259 22 H 0.051 0.949 23 H 0.042 0.958 24 H 0.104 0.896 25 H 0.150 0.850 26 H 0.160 0.840 27 H 0.136 0.864 28 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.563 3.487 2.316 4.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.181 6.181 3 C -0.297 4.297 4 S 0.333 5.667 5 C -0.291 4.291 6 C -0.042 4.042 7 C -0.053 4.053 8 C -0.020 4.020 9 N -0.141 5.141 10 C -0.091 4.091 11 C -0.108 4.108 12 C -0.043 4.043 13 C -0.006 4.006 14 C -0.506 4.506 15 H 0.092 0.908 16 C -0.172 4.172 17 N -0.434 5.434 18 Si 0.786 3.214 19 H -0.202 1.202 20 H -0.203 1.203 21 H -0.182 1.182 22 H 0.069 0.931 23 H 0.060 0.940 24 H 0.123 0.877 25 H 0.168 0.832 26 H 0.178 0.822 27 H 0.154 0.846 28 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.894 5.169 2.146 6.301 hybrid contribution 1.212 -1.897 -0.127 2.255 sum -1.682 3.272 2.019 4.196 Atomic orbital electron populations 1.23075 0.80417 1.03833 1.00368 1.85922 1.18811 1.23594 1.89756 1.22426 0.94959 0.87863 1.24403 1.81696 1.06884 0.95834 1.82266 1.22261 0.96844 0.97121 1.12871 1.20510 0.96527 0.91373 0.95782 1.15596 0.94159 0.83905 1.11654 1.25493 0.92359 0.92125 0.91984 1.81228 1.08872 1.12603 1.11443 1.20735 0.98653 0.91503 0.98198 1.20616 0.95193 0.95053 0.99935 1.19709 0.94172 0.92413 0.98023 1.17282 0.90493 0.91131 1.01676 1.18782 1.03584 0.97933 1.30280 0.90775 1.26221 0.95541 1.02458 0.92983 1.69969 1.27954 1.29291 1.16227 0.85492 0.79428 0.78287 0.78189 1.20164 1.20298 1.18238 0.93051 0.93952 0.87731 0.83246 0.82203 0.84634 0.91490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 10.19 113.37 1.16 1.89 15 2 O -0.27 -12.90 7.72 -84.46 -0.65 -13.55 15 3 C -0.14 -6.56 6.47 67.66 0.44 -6.12 15 4 S 0.07 2.78 21.41 -56.49 -1.21 1.57 15 5 C -0.18 -6.60 6.42 22.87 0.15 -6.46 15 6 C -0.02 -0.49 9.77 22.77 0.22 -0.27 15 7 C -0.05 -1.31 5.73 -21.33 -0.12 -1.43 15 8 C 0.29 8.11 15.32 88.33 1.35 9.46 15 9 N -0.47 -14.22 18.54 19.00 0.35 -13.87 15 10 C -0.07 -1.85 9.68 22.21 0.21 -1.64 15 11 C -0.09 -3.05 9.78 22.40 0.22 -2.83 15 12 C -0.03 -1.37 6.03 -20.16 -0.12 -1.49 15 13 C 0.00 0.17 5.51 -20.72 -0.11 0.06 15 14 C -0.47 -24.54 8.94 23.20 0.21 -24.33 15 15 H 0.07 3.68 7.92 -2.91 -0.02 3.66 15 16 C 0.04 2.17 4.70 85.11 0.40 2.57 15 17 N -0.81 -42.60 11.07 21.78 0.24 -42.36 15 18 Si 0.96 39.42 29.61 68.60 2.03 41.45 15 19 H -0.28 -11.37 7.11 99.48 0.71 -10.66 15 20 H -0.28 -11.00 7.11 99.48 0.71 -10.29 15 21 H -0.26 -10.12 7.11 99.48 0.71 -9.41 15 22 H 0.05 1.66 7.96 -2.38 -0.02 1.64 15 23 H 0.04 1.48 7.98 -2.39 -0.02 1.46 15 24 H 0.10 3.23 8.14 -2.39 -0.02 3.21 15 25 H 0.15 3.65 8.06 -2.91 -0.02 3.62 15 26 H 0.16 3.26 8.06 -2.91 -0.02 3.24 15 27 H 0.14 4.47 8.06 -2.91 -0.02 4.45 15 28 H 0.28 13.56 8.30 -92.71 -0.77 12.79 15 Total: -1.00 -59.61 272.71 5.96 -53.65 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: 1.20 Total: 3.70 kcal Atomic # 6 Polarization: -34.59 SS G_CDS: 4.00 Total: -30.59 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.59 Total: -56.23 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.65 Total: -13.55 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -1.21 Total: 1.57 kcal Total: -59.61 5.96 -53.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396192768.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.109 kcal (2) G-P(sol) polarization free energy of solvation -59.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds