Wall clock time and date at job start Mon Mar 30 2020 06:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35862 * 116.99681 * 2 1 4 4 C 1.35950 * 119.67152 * 359.93072 * 3 2 1 5 5 C 1.41037 * 120.15801 * 180.02562 * 4 3 2 6 6 C 1.41061 * 120.12807 * 180.02562 * 5 4 3 7 7 H 1.07996 * 120.00489 * 330.09166 * 6 5 4 8 8 C 1.39836 * 119.99799 * 150.09424 * 6 5 4 9 9 N 1.30905 * 120.00468 * 161.68268 * 8 6 5 10 10 Si 1.86801 * 119.99971 * 341.67836 * 8 6 5 11 11 H 1.48501 * 109.46949 * 95.41444 * 10 8 6 12 12 H 1.48504 * 109.47285 * 215.41570 * 10 8 6 13 13 H 1.48500 * 109.47112 * 335.41409 * 10 8 6 14 14 C 1.40393 * 119.73903 * 0.02562 * 5 4 3 15 15 C 1.39108 * 120.09827 * 0.02562 * 14 5 4 16 16 S 1.75824 * 130.22084 * 179.97438 * 15 14 5 17 17 C 1.70012 * 93.05142 * 179.86785 * 16 15 14 18 18 C 1.35370 * 112.09760 * 0.30259 * 17 16 15 19 19 C 1.43199 * 123.08626 * 179.90321 * 18 17 16 20 20 N 3.28304 * 135.80754 * 179.97438 * 2 1 3 21 21 C 1.39921 * 119.84043 * 359.97438 * 15 14 5 22 22 H 1.08998 * 109.47110 * 299.99971 * 1 2 3 23 23 H 1.08996 * 109.46929 * 60.00038 * 1 2 3 24 24 H 1.09005 * 109.46579 * 179.97438 * 1 2 3 25 25 H 1.08003 * 119.92062 * 0.02562 * 4 3 2 26 26 H 0.96994 * 120.00350 * 180.02562 * 9 8 6 27 27 H 1.07993 * 119.95131 * 180.02562 * 14 5 4 28 28 H 1.08000 * 123.95177 * 180.17322 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 1.2988 2.3464 -0.0014 5 6 1.9283 3.6085 -0.0020 6 6 1.1526 4.7867 -0.0029 7 1 0.1786 4.7917 -0.4695 8 6 1.6447 5.9483 0.6003 9 7 1.1215 7.1113 0.3050 10 14 3.0487 5.8403 1.8278 11 1 4.3357 6.0925 1.1311 12 1 2.8547 6.8571 2.8926 13 1 3.0719 4.4856 2.4354 14 6 3.3300 3.6876 -0.0016 15 6 4.0943 2.5253 -0.0012 16 16 5.8398 2.3142 -0.0013 17 6 5.7259 0.6179 0.0033 18 6 4.4403 0.1939 -0.0017 19 6 4.0738 -1.1904 -0.0013 20 7 3.7830 -2.2885 0.0010 21 6 3.4627 1.2767 -0.0007 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2206 2.2822 -0.0021 26 1 1.4632 7.9171 0.7232 27 1 3.8156 4.6522 -0.0016 28 1 6.5793 -0.0439 0.0075 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396193389.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:05 Heat of formation + Delta-G solvation = 22.595893 kcal Electronic energy + Delta-G solvation = -16215.940644 eV Core-core repulsion = 13516.382486 eV Total energy + Delta-G solvation = -2699.558158 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.51897 -37.29083 -36.30436 -34.73435 -33.14247 -29.74183 -29.38068 -27.20065 -25.19025 -23.88197 -21.68674 -20.82749 -18.41500 -17.65046 -16.52814 -15.74187 -15.34437 -15.22760 -15.16057 -14.70007 -13.59985 -13.39327 -13.23524 -13.12653 -12.60381 -12.45109 -12.38634 -11.78122 -11.69478 -11.29320 -11.13420 -11.08209 -10.90097 -10.55330 -10.22585 -9.94417 -9.84091 -9.31586 -8.43182 -7.85083 -7.29609 -6.85157 -4.81521 1.23311 2.11153 2.15473 2.50647 2.51216 2.95189 3.04995 3.16672 3.18796 3.76505 3.82850 3.89703 4.23750 4.65788 5.03848 5.21372 5.46572 5.55239 5.74464 5.82436 6.09134 6.16015 6.33868 6.40339 6.44353 6.82923 6.92500 7.10723 7.33067 7.53239 7.91582 7.97106 8.01288 8.27230 8.43885 9.69743 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.021315 B = 0.008755 C = 0.006510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.328585 B = 3197.369475 C = 4300.137499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.325 6.325 3 C 0.190 3.810 4 C -0.269 4.269 5 C 0.131 3.869 6 C -0.415 4.415 7 H 0.099 0.901 8 C 0.083 3.917 9 N -0.784 5.784 10 Si 0.910 3.090 11 H -0.263 1.263 12 H -0.286 1.286 13 H -0.238 1.238 14 C -0.246 4.246 15 C -0.050 4.050 16 S 0.124 5.876 17 C -0.243 4.243 18 C 0.015 3.985 19 C 0.290 3.710 20 N -0.441 5.441 21 C -0.195 4.195 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.088 0.912 25 H 0.119 0.881 26 H 0.292 0.708 27 H 0.111 0.889 28 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.919 -3.727 0.973 5.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.238 6.238 3 C 0.143 3.857 4 C -0.289 4.289 5 C 0.125 3.875 6 C -0.443 4.443 7 H 0.117 0.883 8 C -0.140 4.140 9 N -0.405 5.405 10 Si 0.735 3.265 11 H -0.189 1.189 12 H -0.213 1.213 13 H -0.161 1.161 14 C -0.273 4.273 15 C -0.165 4.165 16 S 0.389 5.611 17 C -0.381 4.381 18 C -0.003 4.003 19 C -0.026 4.026 20 N -0.118 5.118 21 C -0.201 4.201 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.107 0.893 25 H 0.137 0.863 26 H 0.103 0.897 27 H 0.129 0.871 28 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.745 -4.411 0.973 6.551 hybrid contribution -0.837 -0.262 0.447 0.984 sum 3.908 -4.673 1.420 6.255 Atomic orbital electron populations 1.22927 0.79194 1.02673 1.01526 1.85991 1.20774 1.28291 1.88764 1.18182 0.89447 0.83744 0.94307 1.20736 0.98856 0.91648 1.17705 1.17256 0.90657 0.92351 0.87265 1.19579 1.04138 0.91735 1.28804 0.88333 1.26310 0.97071 0.94104 0.96526 1.69703 1.37400 0.99429 1.33986 0.86272 0.80021 0.80457 0.79708 1.18882 1.21338 1.16091 1.20228 0.93160 0.94401 1.19479 1.21925 0.95275 0.96030 1.03275 1.82615 1.02954 0.97776 1.77730 1.24498 0.98897 1.01234 1.13508 1.15838 0.92174 0.85101 1.07177 1.25183 0.92442 0.92011 0.92948 1.81073 1.08426 1.12376 1.09900 1.17341 0.89559 0.90049 1.23182 0.92710 0.92760 0.89346 0.86281 0.89685 0.87115 0.82158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.80 101.05 0.99 1.47 15 2 O -0.32 -6.30 9.21 -19.31 -0.18 -6.48 15 3 C 0.19 4.00 6.71 -39.02 -0.26 3.74 15 4 C -0.27 -5.73 8.69 -39.34 -0.34 -6.07 15 5 C 0.13 3.02 5.09 -106.95 -0.54 2.47 15 6 C -0.42 -9.97 9.54 -37.91 -0.36 -10.33 15 7 H 0.10 2.44 8.06 -52.49 -0.42 2.02 15 8 C 0.08 1.94 5.39 -17.35 -0.09 1.85 15 9 N -0.78 -18.68 13.93 55.54 0.77 -17.91 15 10 Si 0.91 18.82 24.52 -169.99 -4.17 14.65 15 11 H -0.26 -5.26 6.71 56.52 0.38 -4.88 15 12 H -0.29 -5.70 7.11 56.52 0.40 -5.30 15 13 H -0.24 -5.10 6.87 56.52 0.39 -4.71 15 14 C -0.25 -5.47 7.20 -38.45 -0.28 -5.74 15 15 C -0.05 -1.04 6.43 -38.63 -0.25 -1.29 15 16 S 0.12 2.05 22.98 -107.50 -2.47 -0.42 15 17 C -0.24 -3.89 10.63 29.71 0.32 -3.57 15 18 C 0.02 0.29 5.85 -105.94 -0.62 -0.33 15 19 C 0.29 5.54 14.33 -22.48 -0.32 5.22 15 20 N -0.44 -8.70 18.54 41.83 0.78 -7.93 15 21 C -0.20 -4.09 6.06 -104.83 -0.64 -4.73 15 22 H 0.05 0.77 7.63 -51.93 -0.40 0.37 15 23 H 0.05 0.76 7.63 -51.93 -0.40 0.36 15 24 H 0.09 1.09 8.14 -51.93 -0.42 0.66 15 25 H 0.12 2.30 6.15 -52.48 -0.32 1.98 15 26 H 0.29 6.27 8.30 -40.82 -0.34 5.93 15 27 H 0.11 2.43 4.72 -52.49 -0.25 2.18 15 28 H 0.16 2.06 8.06 -52.49 -0.42 1.64 15 LS Contribution 264.27 15.07 3.98 3.98 Total: -1.00 -25.69 264.27 -5.48 -31.17 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -1.80 Total: 0.25 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -2.40 Total: -17.32 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: 1.55 Total: -25.84 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.18 Total: -6.48 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -4.17 Total: 14.65 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.47 Total: -0.42 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -25.69 -5.48 -31.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396193389.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.766 kcal (2) G-P(sol) polarization free energy of solvation -25.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds