Wall clock time and date at job start Mon Mar 30 2020 06:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35862 * 116.99681 * 2 1 4 4 C 1.35950 * 119.67152 * 359.93072 * 3 2 1 5 5 C 1.41037 * 120.15801 * 180.02562 * 4 3 2 6 6 C 1.41061 * 120.12807 * 180.02562 * 5 4 3 7 7 H 1.07996 * 120.00489 * 330.09166 * 6 5 4 8 8 C 1.39836 * 119.99799 * 150.09424 * 6 5 4 9 9 N 1.30905 * 120.00468 * 161.68268 * 8 6 5 10 10 Si 1.86801 * 119.99971 * 341.67836 * 8 6 5 11 11 H 1.48501 * 109.46949 * 95.41444 * 10 8 6 12 12 H 1.48504 * 109.47285 * 215.41570 * 10 8 6 13 13 H 1.48500 * 109.47112 * 335.41409 * 10 8 6 14 14 C 1.40393 * 119.73903 * 0.02562 * 5 4 3 15 15 C 1.39108 * 120.09827 * 0.02562 * 14 5 4 16 16 S 1.75824 * 130.22084 * 179.97438 * 15 14 5 17 17 C 1.70012 * 93.05142 * 179.86785 * 16 15 14 18 18 C 1.35370 * 112.09760 * 0.30259 * 17 16 15 19 19 C 1.43199 * 123.08626 * 179.90321 * 18 17 16 20 20 N 3.28304 * 135.80754 * 179.97438 * 2 1 3 21 21 C 1.39921 * 119.84043 * 359.97438 * 15 14 5 22 22 H 1.08998 * 109.47110 * 299.99971 * 1 2 3 23 23 H 1.08996 * 109.46929 * 60.00038 * 1 2 3 24 24 H 1.09005 * 109.46579 * 179.97438 * 1 2 3 25 25 H 1.08003 * 119.92062 * 0.02562 * 4 3 2 26 26 H 0.96994 * 120.00350 * 180.02562 * 9 8 6 27 27 H 1.07993 * 119.95131 * 180.02562 * 14 5 4 28 28 H 1.08000 * 123.95177 * 180.17322 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 1.2988 2.3464 -0.0014 5 6 1.9283 3.6085 -0.0020 6 6 1.1526 4.7867 -0.0029 7 1 0.1786 4.7917 -0.4695 8 6 1.6447 5.9483 0.6003 9 7 1.1215 7.1113 0.3050 10 14 3.0487 5.8403 1.8278 11 1 4.3357 6.0925 1.1311 12 1 2.8547 6.8571 2.8926 13 1 3.0719 4.4856 2.4354 14 6 3.3300 3.6876 -0.0016 15 6 4.0943 2.5253 -0.0012 16 16 5.8398 2.3142 -0.0013 17 6 5.7259 0.6179 0.0033 18 6 4.4403 0.1939 -0.0017 19 6 4.0738 -1.1904 -0.0013 20 7 3.7830 -2.2885 0.0010 21 6 3.4627 1.2767 -0.0007 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2206 2.2822 -0.0021 26 1 1.4632 7.9171 0.7232 27 1 3.8156 4.6522 -0.0016 28 1 6.5793 -0.0439 0.0075 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396193389.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:04 Heat of formation + Delta-G solvation = 8.449205 kcal Electronic energy + Delta-G solvation = -16216.554090 eV Core-core repulsion = 13516.382486 eV Total energy + Delta-G solvation = -2700.171604 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.06598 -38.78324 -37.84683 -36.31284 -34.78269 -31.33193 -30.97315 -28.58790 -26.74437 -25.39338 -23.29788 -22.41545 -20.01199 -19.21009 -18.02454 -17.28923 -16.96469 -16.78722 -16.61901 -16.13600 -15.07518 -14.93961 -14.81536 -14.69620 -14.07473 -14.01018 -13.91195 -13.30014 -13.11619 -12.90548 -12.66532 -12.54117 -12.44244 -12.03667 -11.79179 -11.57682 -11.43471 -10.95491 -9.94186 -9.43960 -9.00372 -8.36393 -6.57802 -0.20628 0.50667 0.64209 0.88030 1.04487 1.29823 1.40649 1.52258 1.71697 2.11351 2.25758 2.48567 2.63777 3.21864 3.32257 3.80000 4.26564 4.32929 4.37895 4.46177 4.61079 4.68198 4.80086 4.84129 4.88444 5.19724 5.33921 5.45471 5.63642 5.87854 6.17682 6.37543 6.52157 6.59903 6.74016 8.05575 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.021315 B = 0.008755 C = 0.006510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.328585 B = 3197.369475 C = 4300.137499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.336 6.336 3 C 0.182 3.818 4 C -0.276 4.276 5 C 0.120 3.880 6 C -0.455 4.455 7 H 0.071 0.929 8 C 0.056 3.944 9 N -0.826 5.826 10 Si 0.953 3.047 11 H -0.250 1.250 12 H -0.275 1.275 13 H -0.251 1.251 14 C -0.259 4.259 15 C -0.081 4.081 16 S 0.199 5.801 17 C -0.199 4.199 18 C -0.021 4.021 19 C 0.301 3.699 20 N -0.460 5.460 21 C -0.195 4.195 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.117 0.883 25 H 0.128 0.872 26 H 0.300 0.700 27 H 0.110 0.890 28 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.774 -5.425 1.380 8.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.250 6.250 3 C 0.134 3.866 4 C -0.297 4.297 5 C 0.114 3.886 6 C -0.484 4.484 7 H 0.089 0.911 8 C -0.162 4.162 9 N -0.450 5.450 10 Si 0.776 3.224 11 H -0.174 1.174 12 H -0.202 1.202 13 H -0.175 1.175 14 C -0.285 4.285 15 C -0.196 4.196 16 S 0.466 5.534 17 C -0.338 4.338 18 C -0.039 4.039 19 C -0.015 4.015 20 N -0.137 5.137 21 C -0.202 4.202 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.135 0.865 25 H 0.146 0.854 26 H 0.111 0.889 27 H 0.128 0.872 28 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 7.588 -6.094 1.373 9.828 hybrid contribution -1.533 -0.038 0.267 1.556 sum 6.055 -6.132 1.640 8.773 Atomic orbital electron populations 1.23227 0.77029 1.04737 1.02091 1.85974 1.23048 1.27443 1.88529 1.18331 0.90030 0.84122 0.94077 1.20879 0.99578 0.91529 1.17696 1.17387 0.91425 0.92440 0.87353 1.19478 1.03853 0.93250 1.31797 0.91104 1.26817 0.98613 0.93591 0.97227 1.69719 1.39379 1.00031 1.35839 0.85630 0.78623 0.79771 0.78393 1.17440 1.20154 1.17453 1.20244 0.93017 0.95084 1.20164 1.22288 0.98564 0.95428 1.03341 1.82510 0.98413 0.97095 1.75396 1.25169 0.99236 1.02060 1.07323 1.15750 0.92638 0.84483 1.11028 1.25157 0.92098 0.91908 0.92328 1.81087 1.08683 1.12934 1.10992 1.17770 0.90104 0.91100 1.21207 0.92167 0.92220 0.86529 0.85445 0.88935 0.87205 0.77812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 9.80 113.37 1.11 1.79 15 2 O -0.34 -12.69 9.21 -92.00 -0.85 -13.53 15 3 C 0.18 7.53 6.71 22.63 0.15 7.68 15 4 C -0.28 -11.99 8.69 22.42 0.19 -11.79 15 5 C 0.12 5.66 5.09 -21.38 -0.11 5.55 15 6 C -0.46 -23.13 9.54 23.35 0.22 -22.91 15 7 H 0.07 3.82 8.06 -2.91 -0.02 3.80 15 8 C 0.06 2.73 5.39 85.22 0.46 3.19 15 9 N -0.83 -41.14 13.93 21.81 0.30 -40.83 15 10 Si 0.95 38.83 24.52 68.60 1.68 40.51 15 11 H -0.25 -9.47 6.71 99.48 0.67 -8.80 15 12 H -0.28 -10.54 7.11 99.48 0.71 -9.83 15 13 H -0.25 -10.61 6.87 99.48 0.68 -9.93 15 14 C -0.26 -11.42 7.20 23.00 0.17 -11.25 15 15 C -0.08 -3.19 6.43 22.89 0.15 -3.05 15 16 S 0.20 5.67 22.98 -56.49 -1.30 4.37 15 17 C -0.20 -5.28 10.63 67.16 0.71 -4.56 15 18 C -0.02 -0.70 5.85 -20.72 -0.12 -0.82 15 19 C 0.30 10.63 14.33 88.33 1.27 11.90 15 20 N -0.46 -17.08 18.54 19.00 0.35 -16.73 15 21 C -0.20 -7.81 6.06 -20.00 -0.12 -7.93 15 22 H 0.06 1.65 7.63 -2.39 -0.02 1.63 15 23 H 0.06 1.63 7.63 -2.39 -0.02 1.61 15 24 H 0.12 2.64 8.14 -2.38 -0.02 2.62 15 25 H 0.13 5.11 6.15 -2.91 -0.02 5.09 15 26 H 0.30 13.32 8.30 -92.71 -0.77 12.55 15 27 H 0.11 4.76 4.72 -2.91 -0.01 4.75 15 28 H 0.20 3.73 8.06 -2.91 -0.02 3.70 15 Total: -1.00 -56.66 264.27 5.43 -51.23 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 1.15 Total: 7.19 kcal Atomic # 6 Polarization: -36.29 SS G_CDS: 4.08 Total: -32.21 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 0.66 Total: -57.56 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.85 Total: -13.53 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 1.68 Total: 40.51 kcal Atomic # 16 Polarization: 5.67 SS G_CDS: -1.30 Total: 4.37 kcal Total: -56.66 5.43 -51.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396193389.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.677 kcal (2) G-P(sol) polarization free energy of solvation -56.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds