Wall clock time and date at job start Mon Mar 30 2020 06:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35916 * 116.99883 * 2 1 4 4 C 1.38616 * 119.46735 * 0.02562 * 3 2 1 5 5 C 1.39760 * 121.41790 * 180.02562 * 4 3 2 6 6 S 1.75845 * 130.36287 * 179.97438 * 5 4 3 7 7 C 1.70025 * 93.03521 * 179.82751 * 6 5 4 8 8 C 1.35490 * 111.96103 * 0.35288 * 7 6 5 9 9 C 1.43198 * 123.12249 * 179.85067 * 8 7 6 10 10 N 7.52678 * 128.75776 * 359.96939 * 2 1 3 11 11 C 1.39378 * 119.76026 * 359.97438 * 5 4 3 12 12 C 1.47398 * 118.67288 * 359.97438 * 11 5 4 13 13 C 1.40707 * 120.41181 * 179.97438 * 12 11 5 14 14 H 1.08003 * 119.99503 * 328.99773 * 13 12 11 15 15 C 1.39938 * 120.00088 * 148.99618 * 13 12 11 16 16 N 1.30853 * 119.99991 * 162.76319 * 15 13 12 17 17 Si 1.86804 * 120.00020 * 342.75952 * 15 13 12 18 18 H 1.48493 * 109.46936 * 95.30488 * 17 15 13 19 19 H 1.48506 * 109.46657 * 215.30567 * 17 15 13 20 20 H 1.48493 * 109.46873 * 335.30192 * 17 15 13 21 21 C 1.38055 * 119.47081 * 180.02562 * 3 2 1 22 22 H 1.09006 * 109.46977 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47035 * 299.99842 * 1 2 3 24 24 H 1.08994 * 109.47671 * 60.00168 * 1 2 3 25 25 H 1.07999 * 119.29515 * 0.04057 * 4 3 2 26 26 H 1.07995 * 124.02079 * 180.20972 * 7 6 5 27 27 H 0.96999 * 120.00555 * 180.02562 * 16 15 13 28 28 H 1.07996 * 120.04765 * 359.97438 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2802 2.3665 0.0005 5 6 1.8719 3.6326 0.0000 6 16 1.1402 5.2316 -0.0001 7 6 2.6467 6.0200 0.0043 8 6 3.6783 5.1416 -0.0019 9 6 5.0515 5.5474 -0.0031 10 7 6.1409 5.8694 -0.0031 11 6 3.2610 3.7471 -0.0005 12 6 4.0721 2.5164 0.0001 13 6 5.4772 2.5894 -0.0010 14 1 5.9745 3.4176 -0.4839 15 6 6.2303 1.5889 0.6236 16 7 7.5030 1.4597 0.3481 17 14 5.4188 0.4378 1.8508 18 1 5.0034 -0.8092 1.1599 19 1 6.3823 0.1076 2.9316 20 1 4.2259 1.1002 2.4366 21 6 3.4252 1.2706 -0.0005 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 0.2032 2.2867 0.0016 26 1 2.7670 7.0932 0.0090 27 1 8.0250 0.7660 0.7808 28 1 4.0058 0.3599 -0.0005 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396194487.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:09 Heat of formation + Delta-G solvation = 7.883051 kcal Electronic energy + Delta-G solvation = -16279.960968 eV Core-core repulsion = 13579.764814 eV Total energy + Delta-G solvation = -2700.196154 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.76221 -39.13505 -37.35010 -36.11449 -34.74971 -32.35386 -30.23835 -27.86370 -26.88129 -25.66767 -23.07500 -22.46226 -20.07257 -18.74121 -18.20295 -17.51853 -16.90939 -16.78829 -16.44549 -16.06851 -15.23591 -15.03639 -14.63120 -14.10256 -14.06534 -14.03783 -13.72801 -13.67429 -13.13908 -12.93034 -12.78906 -12.54436 -12.27090 -12.14432 -11.77915 -11.57295 -11.16282 -10.93417 -10.15014 -9.10305 -8.94533 -8.51962 -6.63948 -0.19346 0.55872 0.69987 0.86856 1.06615 1.23201 1.35476 1.43158 1.79743 2.03719 2.34186 2.53148 2.62305 3.28343 3.33056 3.91702 4.31053 4.41379 4.43736 4.52962 4.59224 4.76122 4.85452 4.96023 4.97997 5.18662 5.37854 5.49450 5.61396 5.81526 6.06635 6.39489 6.56174 6.61684 6.76064 7.95314 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.014069 B = 0.012467 C = 0.006941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.673552 B = 2245.459890 C = 4032.849450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.193 3.807 4 C -0.292 4.292 5 C -0.089 4.089 6 S 0.245 5.755 7 C -0.211 4.211 8 C -0.030 4.030 9 C 0.298 3.702 10 N -0.473 5.473 11 C -0.180 4.180 12 C 0.137 3.863 13 C -0.451 4.451 14 H 0.071 0.929 15 C 0.051 3.949 16 N -0.821 5.821 17 Si 0.966 3.034 18 H -0.256 1.256 19 H -0.274 1.274 20 H -0.250 1.250 21 C -0.309 4.309 22 H 0.118 0.882 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.147 0.853 26 H 0.201 0.799 27 H 0.301 0.699 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.483 1.328 1.448 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.145 3.855 4 C -0.317 4.317 5 C -0.205 4.205 6 S 0.512 5.488 7 C -0.351 4.351 8 C -0.049 4.049 9 C -0.017 4.017 10 N -0.151 5.151 11 C -0.187 4.187 12 C 0.132 3.868 13 C -0.478 4.478 14 H 0.089 0.911 15 C -0.168 4.168 16 N -0.445 5.445 17 Si 0.789 3.211 18 H -0.181 1.181 19 H -0.200 1.200 20 H -0.173 1.173 21 C -0.331 4.331 22 H 0.136 0.864 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.164 0.836 26 H 0.218 0.782 27 H 0.112 0.888 28 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.897 2.159 1.440 16.107 hybrid contribution 1.734 -1.084 0.230 2.058 sum -14.163 1.075 1.670 14.302 Atomic orbital electron populations 1.23318 0.76642 1.05189 1.02380 1.86032 1.23634 1.27385 1.88564 1.18452 0.91088 0.84120 0.91875 1.19875 0.99302 0.88552 1.23977 1.22399 0.95097 0.99373 1.03587 1.82025 1.02470 0.90640 1.73650 1.25235 0.96950 1.04906 1.07967 1.15928 0.85354 0.92285 1.11301 1.25441 0.92578 0.91386 0.92290 1.81103 1.11689 1.11254 1.11051 1.19840 0.92561 0.90838 1.15441 1.18196 0.91891 0.89490 0.87261 1.19563 0.90835 1.07353 1.30097 0.91106 1.26970 0.95037 0.97199 0.97590 1.69710 1.09337 1.29804 1.35625 0.85433 0.78916 0.78806 0.77958 1.18126 1.20039 1.17319 1.19973 0.92111 0.96473 1.24531 0.86363 0.91738 0.91628 0.83580 0.78232 0.88824 0.87858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.79 113.37 1.11 1.53 15 2 O -0.34 -12.16 10.48 -92.61 -0.97 -13.13 15 3 C 0.19 7.86 6.65 22.32 0.15 8.01 15 4 C -0.29 -10.32 9.03 22.73 0.21 -10.12 15 5 C -0.09 -3.25 6.45 22.91 0.15 -3.10 15 6 S 0.24 6.18 22.98 -56.49 -1.30 4.88 15 7 C -0.21 -6.04 10.65 67.18 0.72 -5.32 15 8 C -0.03 -1.20 5.85 -20.78 -0.12 -1.32 15 9 C 0.30 13.35 13.13 88.33 1.16 14.51 15 10 N -0.47 -22.93 18.22 19.00 0.35 -22.58 15 11 C -0.18 -7.93 6.19 -18.70 -0.12 -8.05 15 12 C 0.14 6.91 5.26 -19.74 -0.10 6.81 15 13 C -0.45 -25.15 8.78 23.29 0.20 -24.94 15 14 H 0.07 4.29 6.03 -2.91 -0.02 4.27 15 15 C 0.05 2.74 5.41 85.25 0.46 3.20 15 16 N -0.82 -45.11 13.93 21.83 0.30 -44.80 15 17 Si 0.97 43.43 24.53 68.60 1.68 45.11 15 18 H -0.26 -11.08 6.73 99.48 0.67 -10.41 15 19 H -0.27 -11.46 7.11 99.48 0.71 -10.76 15 20 H -0.25 -11.46 6.85 99.48 0.68 -10.78 15 21 C -0.31 -14.74 7.05 22.75 0.16 -14.58 15 22 H 0.12 1.94 8.14 -2.38 -0.02 1.92 15 23 H 0.06 1.28 7.62 -2.39 -0.02 1.26 15 24 H 0.07 1.30 7.62 -2.39 -0.02 1.28 15 25 H 0.15 3.99 6.14 -2.91 -0.02 3.97 15 26 H 0.20 4.17 8.06 -2.91 -0.02 4.15 15 27 H 0.30 14.72 8.30 -92.71 -0.77 13.95 15 28 H 0.10 5.07 4.82 -2.91 -0.01 5.06 15 Total: -1.00 -65.20 261.79 5.20 -60.00 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: 1.16 Total: 3.92 kcal Atomic # 6 Polarization: -37.36 SS G_CDS: 3.97 Total: -33.39 kcal Atomic # 7 Polarization: -68.04 SS G_CDS: 0.65 Total: -67.39 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.97 Total: -13.13 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.68 Total: 45.11 kcal Atomic # 16 Polarization: 6.18 SS G_CDS: -1.30 Total: 4.88 kcal Total: -65.20 5.20 -60.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396194487.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.884 kcal (2) G-P(sol) polarization free energy of solvation -65.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds