Wall clock time and date at job start Mon Mar 30 2020 06:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35606 * 117.00187 * 2 1 4 4 C 1.38728 * 119.64934 * 359.97438 * 3 2 1 5 5 C 1.37563 * 120.57100 * 180.02562 * 4 3 2 6 6 C 1.40534 * 119.98006 * 359.97438 * 5 4 3 7 7 C 1.40805 * 120.04865 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99664 * 205.06564 * 7 6 5 9 9 C 1.39831 * 120.00474 * 25.07319 * 7 6 5 10 10 N 1.30954 * 119.99555 * 17.97903 * 9 7 6 11 11 Si 1.86796 * 120.00319 * 197.97406 * 9 7 6 12 12 H 1.48503 * 109.47151 * 89.99805 * 11 9 7 13 13 H 1.48498 * 109.47526 * 210.00128 * 11 9 7 14 14 H 1.48505 * 109.47259 * 330.00399 * 11 9 7 15 15 C 1.42291 * 119.88966 * 359.97438 * 6 5 4 16 16 S 1.75799 * 130.53346 * 180.28562 * 15 6 5 17 17 C 1.70046 * 92.95387 * 180.02562 * 16 15 6 18 18 C 1.33869 * 112.13507 * 359.68271 * 17 16 15 19 19 C 1.43199 * 123.02130 * 180.24533 * 18 17 16 20 20 N 3.29301 * 135.86594 * 179.97438 * 2 1 3 21 21 C 1.38915 * 119.59853 * 0.02562 * 15 6 5 22 22 H 1.09000 * 109.47059 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46945 * 300.00576 * 1 2 3 24 24 H 1.09002 * 109.46604 * 59.99800 * 1 2 3 25 25 H 1.07995 * 119.71237 * 359.97438 * 4 3 2 26 26 H 1.08001 * 120.00581 * 179.97438 * 5 4 3 27 27 H 0.97004 * 119.99435 * 179.97438 * 10 9 7 28 28 H 1.07992 * 123.93255 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2082 0.0000 4 6 1.2821 2.3671 -0.0005 5 6 1.8868 3.6027 -0.0011 6 6 3.2889 3.6982 -0.0005 7 6 3.9094 4.9622 -0.0005 8 1 4.9081 5.0734 -0.3964 9 6 3.2329 6.0733 0.5121 10 7 2.1987 5.9051 1.2977 11 14 3.8042 7.7976 0.0766 12 1 3.1089 8.2534 -1.1539 13 1 3.4874 8.7215 1.1952 14 1 5.2705 7.7888 -0.1580 15 6 4.0802 2.5157 0.0011 16 16 5.8261 2.3092 0.0088 17 6 5.7137 0.6125 0.0047 18 6 4.4430 0.1911 0.0047 19 6 4.0802 -1.1941 0.0067 20 7 3.7925 -2.2931 0.0010 21 6 3.4580 1.2737 0.0016 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 0.2043 2.2986 -0.0014 26 1 1.2842 4.4989 -0.0019 27 1 1.7296 6.6759 1.6536 28 1 6.5679 -0.0482 0.0068 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396194527.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:08 Heat of formation + Delta-G solvation = 24.585521 kcal Electronic energy + Delta-G solvation = -16152.739807 eV Core-core repulsion = 13453.267926 eV Total energy + Delta-G solvation = -2699.471881 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.14420 -37.08970 -36.13737 -34.60281 -32.91864 -29.64791 -28.69681 -26.91131 -24.98548 -23.81294 -21.35927 -20.76600 -18.22734 -17.25763 -16.53027 -15.72869 -15.06142 -14.93376 -14.66483 -14.53292 -13.48504 -13.45715 -13.21846 -12.52145 -12.36842 -12.24154 -11.96735 -11.69556 -11.42323 -11.30881 -11.21701 -10.87993 -10.77726 -10.44288 -10.07714 -9.89416 -9.71607 -9.18631 -8.16622 -7.63135 -7.03204 -6.73706 -4.46031 1.36351 2.32386 2.39379 2.69066 2.83303 2.97582 3.00673 3.06444 3.32437 3.77649 4.01818 4.26604 4.41202 4.80704 5.20500 5.28267 5.61286 5.67939 5.82058 5.92764 6.18471 6.32514 6.54038 6.64144 6.84734 6.96513 7.06435 7.51706 7.65593 7.73200 8.11176 8.14754 8.38955 8.56597 8.65106 9.94611 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.023682 B = 0.007685 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.029930 B = 3642.799147 C = 4739.093232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.326 6.326 3 C 0.023 3.977 4 C -0.155 4.155 5 C -0.133 4.133 6 C 0.131 3.869 7 C -0.453 4.453 8 H 0.083 0.917 9 C 0.077 3.923 10 N -0.784 5.784 11 Si 0.911 3.089 12 H -0.266 1.266 13 H -0.276 1.276 14 H -0.259 1.259 15 C -0.208 4.208 16 S 0.169 5.831 17 C -0.199 4.199 18 C -0.034 4.034 19 C 0.294 3.706 20 N -0.448 5.448 21 C -0.040 4.040 22 H 0.082 0.918 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.106 0.894 26 H 0.130 0.870 27 H 0.285 0.715 28 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.434 -0.585 -1.636 2.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.241 6.241 3 C -0.024 4.024 4 C -0.175 4.175 5 C -0.157 4.157 6 C 0.125 3.875 7 C -0.482 4.482 8 H 0.101 0.899 9 C -0.142 4.142 10 N -0.408 5.408 11 Si 0.735 3.265 12 H -0.191 1.191 13 H -0.201 1.201 14 H -0.183 1.183 15 C -0.324 4.324 16 S 0.437 5.563 17 C -0.339 4.339 18 C -0.055 4.055 19 C -0.022 4.022 20 N -0.125 5.125 21 C -0.047 4.047 22 H 0.100 0.900 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.124 0.876 26 H 0.148 0.852 27 H 0.096 0.904 28 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.203 -1.336 -1.481 2.972 hybrid contribution -1.299 0.311 -0.036 1.336 sum 0.905 -1.025 -1.517 2.043 Atomic orbital electron populations 1.22753 0.80491 1.01978 1.00529 1.85852 1.19474 1.28085 1.90724 1.18169 0.89093 0.83636 1.11479 1.20733 0.97937 0.92573 1.06282 1.21006 0.94048 0.95730 1.04893 1.16896 0.90980 0.89756 0.89854 1.19420 1.02130 0.91651 1.34951 0.89856 1.25899 0.94059 1.01885 0.92363 1.69853 1.16478 1.33628 1.20888 0.86242 0.80559 0.80514 0.79180 1.19051 1.20133 1.18300 1.22330 0.94973 0.95851 1.19231 1.82536 1.04205 0.94785 1.74750 1.24711 0.99243 1.03273 1.06712 1.15706 0.92511 0.85508 1.11800 1.25148 0.92397 0.91963 0.92697 1.81055 1.08395 1.12485 1.10578 1.17553 0.89812 0.90040 1.07267 0.89958 0.93592 0.93678 0.87586 0.85191 0.90409 0.82074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 9.80 101.05 0.99 1.60 15 2 O -0.33 -6.79 9.23 -18.52 -0.17 -6.96 15 3 C 0.02 0.51 6.77 -38.17 -0.26 0.25 15 4 C -0.16 -3.38 8.97 -39.65 -0.36 -3.73 15 5 C -0.13 -3.13 8.65 -38.96 -0.34 -3.47 15 6 C 0.13 3.15 5.59 -106.50 -0.60 2.55 15 7 C -0.45 -10.68 8.81 -38.02 -0.33 -11.02 15 8 H 0.08 1.88 7.75 -52.49 -0.41 1.48 15 9 C 0.08 1.74 5.12 -17.33 -0.09 1.66 15 10 N -0.78 -18.27 10.98 55.54 0.61 -17.66 15 11 Si 0.91 16.93 29.60 -169.99 -5.03 11.90 15 12 H -0.27 -4.90 7.11 56.52 0.40 -4.50 15 13 H -0.28 -5.07 7.11 56.52 0.40 -4.67 15 14 H -0.26 -4.77 7.11 56.52 0.40 -4.37 15 15 C -0.21 -4.66 6.35 -37.77 -0.24 -4.90 15 16 S 0.17 3.03 22.57 -107.50 -2.43 0.60 15 17 C -0.20 -3.35 10.56 29.20 0.31 -3.04 15 18 C -0.03 -0.68 5.82 -106.24 -0.62 -1.30 15 19 C 0.29 5.90 14.35 -22.47 -0.32 5.58 15 20 N -0.45 -9.27 18.54 41.84 0.78 -8.49 15 21 C -0.04 -0.89 6.04 -105.14 -0.64 -1.52 15 22 H 0.08 1.11 8.14 -51.93 -0.42 0.69 15 23 H 0.05 0.69 7.63 -51.93 -0.40 0.30 15 24 H 0.04 0.66 7.63 -51.93 -0.40 0.27 15 25 H 0.11 2.02 6.20 -52.49 -0.33 1.69 15 26 H 0.13 3.10 6.17 -52.49 -0.32 2.78 15 27 H 0.28 6.03 8.30 -40.82 -0.34 5.69 15 28 H 0.16 2.13 8.06 -52.49 -0.42 1.71 15 LS Contribution 268.94 15.07 4.05 4.05 Total: -1.00 -26.34 268.94 -6.51 -32.85 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -1.83 Total: 1.05 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -2.49 Total: -17.34 kcal Atomic # 7 Polarization: -27.54 SS G_CDS: 1.39 Total: -26.16 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.17 Total: -6.96 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.90 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -2.43 Total: 0.60 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -26.34 -6.51 -32.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396194527.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.431 kcal (2) G-P(sol) polarization free energy of solvation -26.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds