Wall clock time and date at job start Mon Mar 30 2020 06:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35606 * 117.00187 * 2 1 4 4 C 1.38728 * 119.64934 * 359.97438 * 3 2 1 5 5 C 1.37563 * 120.57100 * 180.02562 * 4 3 2 6 6 C 1.40534 * 119.98006 * 359.97438 * 5 4 3 7 7 C 1.40805 * 120.04865 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99664 * 205.06564 * 7 6 5 9 9 C 1.39831 * 120.00474 * 25.07319 * 7 6 5 10 10 N 1.30954 * 119.99555 * 17.97903 * 9 7 6 11 11 Si 1.86796 * 120.00319 * 197.97406 * 9 7 6 12 12 H 1.48503 * 109.47151 * 89.99805 * 11 9 7 13 13 H 1.48498 * 109.47526 * 210.00128 * 11 9 7 14 14 H 1.48505 * 109.47259 * 330.00399 * 11 9 7 15 15 C 1.42291 * 119.88966 * 359.97438 * 6 5 4 16 16 S 1.75799 * 130.53346 * 180.28562 * 15 6 5 17 17 C 1.70046 * 92.95387 * 180.02562 * 16 15 6 18 18 C 1.33869 * 112.13507 * 359.68271 * 17 16 15 19 19 C 1.43199 * 123.02130 * 180.24533 * 18 17 16 20 20 N 3.29301 * 135.86594 * 179.97438 * 2 1 3 21 21 C 1.38915 * 119.59853 * 0.02562 * 15 6 5 22 22 H 1.09000 * 109.47059 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46945 * 300.00576 * 1 2 3 24 24 H 1.09002 * 109.46604 * 59.99800 * 1 2 3 25 25 H 1.07995 * 119.71237 * 359.97438 * 4 3 2 26 26 H 1.08001 * 120.00581 * 179.97438 * 5 4 3 27 27 H 0.97004 * 119.99435 * 179.97438 * 10 9 7 28 28 H 1.07992 * 123.93255 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2082 0.0000 4 6 1.2821 2.3671 -0.0005 5 6 1.8868 3.6027 -0.0011 6 6 3.2889 3.6982 -0.0005 7 6 3.9094 4.9622 -0.0005 8 1 4.9081 5.0734 -0.3964 9 6 3.2329 6.0733 0.5121 10 7 2.1987 5.9051 1.2977 11 14 3.8042 7.7976 0.0766 12 1 3.1089 8.2534 -1.1539 13 1 3.4874 8.7215 1.1952 14 1 5.2705 7.7888 -0.1580 15 6 4.0802 2.5157 0.0011 16 16 5.8261 2.3092 0.0088 17 6 5.7137 0.6125 0.0047 18 6 4.4430 0.1911 0.0047 19 6 4.0802 -1.1941 0.0067 20 7 3.7925 -2.2931 0.0010 21 6 3.4580 1.2737 0.0016 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 0.2043 2.2986 -0.0014 26 1 1.2842 4.4989 -0.0019 27 1 1.7296 6.6759 1.6536 28 1 6.5679 -0.0482 0.0068 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396194527.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:07 Heat of formation + Delta-G solvation = 11.281194 kcal Electronic energy + Delta-G solvation = -16153.316726 eV Core-core repulsion = 13453.267926 eV Total energy + Delta-G solvation = -2700.048800 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.73782 -38.63319 -37.74327 -36.20860 -34.56181 -31.33440 -30.26131 -28.37966 -26.58374 -25.36055 -23.03326 -22.37141 -19.83981 -18.86711 -18.09405 -17.30052 -16.61583 -16.40548 -16.30905 -16.01135 -15.04235 -15.01981 -14.73657 -14.05823 -13.95159 -13.84318 -13.56923 -13.22126 -12.91842 -12.80723 -12.75361 -12.35105 -12.30609 -11.93833 -11.67388 -11.49782 -11.32740 -10.84247 -9.75248 -9.25780 -8.70261 -8.34934 -6.20142 -0.12344 0.69820 0.84666 1.06062 1.26500 1.45686 1.55733 1.57588 1.76605 2.23250 2.43125 2.75501 2.80521 3.29859 3.54506 3.79148 4.32443 4.39115 4.43596 4.61649 4.69097 4.79666 4.93458 4.97485 5.19555 5.30782 5.40495 5.83928 5.93655 5.99063 6.43493 6.57349 6.72935 6.84145 6.98654 8.30176 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.023682 B = 0.007685 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.029930 B = 3642.799147 C = 4739.093232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.343 6.343 3 C 0.011 3.989 4 C -0.157 4.157 5 C -0.161 4.161 6 C 0.106 3.894 7 C -0.478 4.478 8 H 0.086 0.914 9 C 0.041 3.959 10 N -0.815 5.815 11 Si 0.978 3.022 12 H -0.264 1.264 13 H -0.271 1.271 14 H -0.254 1.254 15 C -0.238 4.238 16 S 0.222 5.778 17 C -0.165 4.165 18 C -0.066 4.066 19 C 0.304 3.696 20 N -0.466 5.466 21 C -0.055 4.055 22 H 0.108 0.892 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.126 0.874 26 H 0.117 0.883 27 H 0.291 0.709 28 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.844 -0.693 -1.851 3.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.259 6.259 3 C -0.036 4.036 4 C -0.177 4.177 5 C -0.184 4.184 6 C 0.101 3.899 7 C -0.507 4.507 8 H 0.104 0.896 9 C -0.175 4.175 10 N -0.440 5.440 11 Si 0.799 3.201 12 H -0.188 1.188 13 H -0.196 1.196 14 H -0.177 1.177 15 C -0.353 4.353 16 S 0.490 5.510 17 C -0.305 4.305 18 C -0.086 4.086 19 C -0.011 4.011 20 N -0.144 5.144 21 C -0.063 4.063 22 H 0.126 0.874 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.144 0.856 26 H 0.135 0.865 27 H 0.102 0.898 28 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 3.599 -1.459 -1.696 4.237 hybrid contribution -1.705 0.254 0.040 1.724 sum 1.894 -1.205 -1.656 2.789 Atomic orbital electron populations 1.23046 0.78227 1.03965 1.01297 1.85822 1.21914 1.27459 1.90689 1.18389 0.89676 0.84165 1.11341 1.20898 0.99025 0.92043 1.05690 1.20974 0.94337 0.95932 1.07179 1.17202 0.91579 0.90770 0.90389 1.19643 1.02665 0.92334 1.36077 0.89551 1.26668 0.93944 1.05199 0.91711 1.69906 1.17526 1.34928 1.21664 0.85245 0.80194 0.75859 0.78850 1.18832 1.19603 1.17724 1.22719 0.98030 0.95504 1.19094 1.82339 1.00320 0.95010 1.73323 1.25224 0.99592 1.03465 1.02239 1.15631 0.92993 0.84845 1.15134 1.25138 0.92016 0.91867 0.92076 1.81057 1.08703 1.12973 1.11656 1.17961 0.90554 0.90999 1.06746 0.87419 0.93006 0.92668 0.85637 0.86489 0.89815 0.77630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 9.80 113.37 1.11 2.02 15 2 O -0.34 -14.14 9.23 -89.17 -0.82 -14.96 15 3 C 0.01 0.50 6.77 23.19 0.16 0.65 15 4 C -0.16 -6.94 8.97 22.23 0.20 -6.74 15 5 C -0.16 -7.82 8.65 22.67 0.20 -7.63 15 6 C 0.11 5.20 5.59 -21.08 -0.12 5.08 15 7 C -0.48 -22.84 8.81 23.28 0.21 -22.63 15 8 H 0.09 3.90 7.75 -2.91 -0.02 3.88 15 9 C 0.04 1.88 5.12 85.21 0.44 2.31 15 10 N -0.81 -38.77 10.98 21.81 0.24 -38.53 15 11 Si 0.98 34.42 29.60 68.60 2.03 36.45 15 12 H -0.26 -9.11 7.11 99.48 0.71 -8.41 15 13 H -0.27 -9.24 7.11 99.48 0.71 -8.53 15 14 H -0.25 -8.62 7.11 99.48 0.71 -7.91 15 15 C -0.24 -10.60 6.35 23.44 0.15 -10.45 15 16 S 0.22 7.44 22.57 -56.49 -1.28 6.17 15 17 C -0.17 -5.00 10.56 66.83 0.71 -4.30 15 18 C -0.07 -2.48 5.82 -20.91 -0.12 -2.60 15 19 C 0.30 11.78 14.35 88.33 1.27 13.04 15 20 N -0.47 -18.69 18.54 19.00 0.35 -18.34 15 21 C -0.06 -2.44 6.04 -20.20 -0.12 -2.57 15 22 H 0.11 2.72 8.14 -2.39 -0.02 2.70 15 23 H 0.05 1.52 7.63 -2.39 -0.02 1.50 15 24 H 0.05 1.57 7.63 -2.39 -0.02 1.55 15 25 H 0.13 4.83 6.20 -2.91 -0.02 4.81 15 26 H 0.12 5.85 6.17 -2.91 -0.02 5.84 15 27 H 0.29 12.52 8.30 -92.71 -0.77 11.75 15 28 H 0.21 4.35 8.06 -2.91 -0.02 4.33 15 Total: -1.00 -57.32 268.94 5.80 -51.52 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 1.21 Total: 11.51 kcal Atomic # 6 Polarization: -37.87 SS G_CDS: 4.06 Total: -33.80 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: 0.59 Total: -56.87 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.82 Total: -14.96 kcal Atomic # 14 Polarization: 34.42 SS G_CDS: 2.03 Total: 36.45 kcal Atomic # 16 Polarization: 7.44 SS G_CDS: -1.28 Total: 6.17 kcal Total: -57.32 5.80 -51.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396194527.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.797 kcal (2) G-P(sol) polarization free energy of solvation -57.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds