Wall clock time and date at job start Mon Mar 30 2020 06:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35967 * 116.99904 * 2 1 4 4 C 1.39398 * 119.89395 * 359.72729 * 3 2 1 5 5 C 1.37459 * 120.18388 * 180.25670 * 4 3 2 6 6 C 1.39945 * 120.58344 * 0.02562 * 5 4 3 7 7 S 1.75878 * 129.64388 * 180.02562 * 6 5 4 8 8 C 1.75184 * 92.74715 * 179.97438 * 7 6 5 9 9 C 1.39140 * 124.64926 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99931 * 173.13129 * 9 8 7 11 11 C 1.40631 * 120.00091 * 353.13489 * 9 8 7 12 12 N 1.30482 * 120.00038 * 6.57626 * 11 9 8 13 13 Si 1.86809 * 119.99950 * 186.57200 * 11 9 8 14 14 H 1.48498 * 109.47072 * 94.98951 * 13 11 9 15 15 H 1.48500 * 109.47100 * 214.98728 * 13 11 9 16 16 H 1.48503 * 109.47092 * 334.98835 * 13 11 9 17 17 C 1.38901 * 110.70204 * 0.02562 * 8 7 6 18 18 C 1.43192 * 123.26716 * 180.02562 * 17 8 7 19 19 N 5.94921 * 170.49394 * 0.24723 * 2 1 3 20 20 C 1.39859 * 119.64603 * 359.97438 * 6 5 4 21 21 C 1.37465 * 119.88953 * 180.02562 * 3 2 1 22 22 H 1.08998 * 109.46816 * 299.99931 * 1 2 3 23 23 H 1.09002 * 109.47076 * 59.99955 * 1 2 3 24 24 H 1.09000 * 109.46917 * 179.97438 * 1 2 3 25 25 H 1.08001 * 119.90288 * 0.25489 * 4 3 2 26 26 H 1.08000 * 119.70821 * 179.97438 * 5 4 3 27 27 H 0.97007 * 120.00157 * 180.02562 * 12 11 9 28 28 H 1.08003 * 119.82258 * 359.72034 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2849 2.3791 -0.0058 5 6 1.9027 3.6070 -0.0111 6 6 3.2990 3.7016 -0.0114 7 16 4.3270 5.1286 -0.0170 8 6 5.7959 4.1739 -0.0123 9 6 7.0830 4.7025 -0.0145 10 1 7.9352 4.0492 0.1005 11 6 7.2741 6.0874 -0.1665 12 7 6.2459 6.8907 -0.1765 13 14 9.0000 6.7772 -0.3538 14 1 9.3167 6.9336 -1.7961 15 1 9.0801 8.0997 0.3169 16 1 9.9753 5.8464 0.2690 17 6 5.4995 2.8169 -0.0073 18 6 6.5015 1.7940 -0.0022 19 7 7.2965 0.9825 0.0042 20 6 4.0713 2.5356 -0.0057 21 6 3.4192 1.2808 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2066 2.3188 -0.0060 26 1 1.3053 4.5068 -0.0160 27 1 6.3776 7.8460 -0.2816 28 1 4.0029 0.3721 0.0036 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396195029.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:30 Heat of formation + Delta-G solvation = -15.270426 kcal Electronic energy + Delta-G solvation = -15767.614911 eV Core-core repulsion = 13066.414747 eV Total energy + Delta-G solvation = -2701.200164 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.80060 -38.78957 -37.22125 -36.47224 -34.39324 -31.61009 -30.71411 -28.07048 -27.56670 -24.52090 -23.30812 -22.15494 -20.12991 -18.75836 -17.93281 -17.75694 -16.67257 -16.51459 -16.17689 -16.00558 -14.77463 -14.74351 -14.55766 -14.33287 -13.91700 -13.67405 -13.59768 -13.57527 -13.28794 -13.03202 -12.55023 -12.38615 -12.16832 -12.00280 -11.71838 -11.65692 -11.09135 -10.86045 -9.95074 -9.30741 -9.12151 -8.10659 -6.88762 0.25953 0.61840 0.94028 1.27229 1.33364 1.51657 1.55628 1.72058 2.08097 2.21944 2.44688 2.51860 2.76666 3.28486 3.91217 4.01730 4.24154 4.42508 4.49080 4.62801 4.67434 4.71045 4.77787 4.78449 5.22608 5.29305 5.41367 5.54490 5.64241 5.77178 5.99247 6.09251 6.31758 6.63720 7.10997 7.71894 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.032982 B = 0.006164 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.751940 B = 4541.680915 C = 5370.213758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.344 6.344 3 C 0.139 3.861 4 C -0.237 4.237 5 C -0.021 4.021 6 C -0.285 4.285 7 S 0.178 5.822 8 C 0.056 3.944 9 C -0.366 4.366 10 H 0.093 0.907 11 C 0.028 3.972 12 N -0.753 5.753 13 Si 1.005 2.995 14 H -0.253 1.253 15 H -0.244 1.244 16 H -0.264 1.264 17 C -0.337 4.337 18 C 0.323 3.677 19 N -0.559 5.559 20 C 0.054 3.946 21 C -0.209 4.209 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.117 0.883 25 H 0.160 0.840 26 H 0.147 0.853 27 H 0.326 0.674 28 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.120 4.129 -0.322 10.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.258 6.258 3 C 0.092 3.908 4 C -0.257 4.257 5 C -0.043 4.043 6 C -0.399 4.399 7 S 0.437 5.563 8 C -0.066 4.066 9 C -0.399 4.399 10 H 0.111 0.889 11 C -0.198 4.198 12 N -0.376 5.376 13 Si 0.823 3.177 14 H -0.177 1.177 15 H -0.167 1.167 16 H -0.188 1.188 17 C -0.349 4.349 18 C 0.016 3.984 19 N -0.241 5.241 20 C 0.046 3.954 21 C -0.230 4.230 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.136 0.864 25 H 0.177 0.823 26 H 0.165 0.835 27 H 0.141 0.859 28 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.249 4.418 -0.326 9.363 hybrid contribution 0.658 -1.285 -0.047 1.444 sum -7.591 3.133 -0.374 8.220 Atomic orbital electron populations 1.23332 0.76377 1.05323 1.02422 1.86025 1.23703 1.27011 1.89090 1.18561 0.91122 0.84964 0.96168 1.21108 1.00505 0.90748 1.13371 1.20516 0.90654 0.98143 0.95027 1.23692 0.98866 1.00244 1.17050 1.84358 0.91103 1.00857 1.79985 1.21580 0.98436 0.93407 0.93189 1.19778 0.92624 0.94036 1.33474 0.88935 1.27271 1.05365 0.95865 0.91273 1.68476 1.34313 1.08537 1.26315 0.84776 0.73754 0.78765 0.80438 1.17712 1.16709 1.18753 1.15592 0.87617 0.88375 1.43320 1.25379 0.91621 0.91460 0.89935 1.80963 1.11450 1.11713 1.20004 1.18392 0.90501 0.92417 0.94095 1.19857 0.92370 0.95846 1.14962 0.91565 0.91576 0.86430 0.82277 0.83518 0.85864 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.81 113.37 1.11 1.51 15 2 O -0.34 -11.45 10.49 -93.17 -0.98 -12.43 15 3 C 0.14 5.26 6.66 22.37 0.15 5.41 15 4 C -0.24 -7.63 9.02 22.37 0.20 -7.43 15 5 C -0.02 -0.74 10.05 22.50 0.23 -0.52 15 6 C -0.28 -12.26 6.43 23.08 0.15 -12.11 15 7 S 0.18 7.71 20.04 -56.49 -1.13 6.58 15 8 C 0.06 2.79 6.12 22.65 0.14 2.93 15 9 C -0.37 -17.28 8.90 23.07 0.21 -17.07 15 10 H 0.09 4.50 7.40 -2.91 -0.02 4.47 15 11 C 0.03 1.12 5.50 85.48 0.47 1.59 15 12 N -0.75 -29.75 10.58 21.95 0.23 -29.52 15 13 Si 1.01 30.68 29.57 68.60 2.03 32.71 15 14 H -0.25 -7.51 7.11 99.48 0.71 -6.81 15 15 H -0.24 -6.59 7.11 99.48 0.71 -5.89 15 16 H -0.26 -8.52 7.11 99.48 0.71 -7.81 15 17 C -0.34 -17.39 5.95 -19.99 -0.12 -17.51 15 18 C 0.32 17.23 14.55 88.33 1.29 18.51 15 19 N -0.56 -30.12 18.54 19.00 0.35 -29.76 15 20 C 0.05 2.60 6.00 -20.22 -0.12 2.48 15 21 C -0.21 -9.52 9.76 22.87 0.22 -9.30 15 22 H 0.07 1.17 7.66 -2.39 -0.02 1.15 15 23 H 0.07 1.17 7.65 -2.39 -0.02 1.15 15 24 H 0.12 1.76 8.14 -2.39 -0.02 1.74 15 25 H 0.16 3.71 6.29 -2.91 -0.02 3.69 15 26 H 0.15 4.07 8.06 -2.91 -0.02 4.04 15 27 H 0.33 10.88 8.29 -92.70 -0.77 10.12 15 28 H 0.09 4.47 8.03 -2.91 -0.02 4.45 15 Total: -1.00 -59.24 270.81 5.63 -53.61 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 1.21 Total: 10.31 kcal Atomic # 6 Polarization: -35.42 SS G_CDS: 3.92 Total: -31.50 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: 0.58 Total: -59.28 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -0.98 Total: -12.43 kcal Atomic # 14 Polarization: 30.68 SS G_CDS: 2.03 Total: 32.71 kcal Atomic # 16 Polarization: 7.71 SS G_CDS: -1.13 Total: 6.58 kcal Total: -59.24 5.63 -53.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396195029.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.341 kcal (2) G-P(sol) polarization free energy of solvation -59.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds