Wall clock time and date at job start Mon Mar 30 2020 06:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35793 * 117.00121 * 2 1 4 4 C 1.39497 * 119.94690 * 0.02562 * 3 2 1 5 5 C 1.35909 * 120.40275 * 180.02562 * 4 3 2 6 6 C 1.41533 * 120.58895 * 359.97438 * 5 4 3 7 7 C 1.45487 * 128.62014 * 180.02562 * 6 5 4 8 8 C 1.43205 * 123.25487 * 359.97256 * 7 6 5 9 9 N 7.47414 * 103.39566 * 359.97438 * 2 1 3 10 10 C 1.38932 * 113.48815 * 179.70532 * 7 6 5 11 11 C 1.39058 * 124.65216 * 180.26784 * 10 7 6 12 12 H 1.08000 * 119.99620 * 359.97438 * 11 10 7 13 13 C 1.40593 * 120.00542 * 179.97438 * 11 10 7 14 14 N 1.30518 * 119.99780 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00255 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47155 * 90.00094 * 15 13 11 17 17 H 1.48506 * 109.47029 * 210.00107 * 15 13 11 18 18 H 1.48499 * 109.46971 * 329.99925 * 15 13 11 19 19 S 1.75204 * 110.70370 * 0.26583 * 10 7 6 20 20 C 1.39957 * 119.03204 * 0.22779 * 6 5 4 21 21 C 1.38179 * 119.95116 * 180.54123 * 3 2 1 22 22 H 1.09010 * 109.46784 * 299.99906 * 1 2 3 23 23 H 1.09001 * 109.47192 * 59.99733 * 1 2 3 24 24 H 1.08994 * 109.47379 * 180.02562 * 1 2 3 25 25 H 1.07999 * 119.80271 * 0.02562 * 4 3 2 26 26 H 1.08006 * 119.70336 * 179.97438 * 5 4 3 27 27 H 0.96997 * 119.99588 * 179.97438 * 14 13 11 28 28 H 1.08004 * 119.84442 * 359.38116 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 1.2847 2.3791 0.0005 5 6 1.8921 3.5950 0.0000 6 6 3.3039 3.6948 -0.0005 7 6 4.1295 4.8926 -0.0006 8 6 3.5891 6.2188 -0.0007 9 7 3.1605 7.2708 -0.0033 10 6 5.4929 4.6255 0.0053 11 6 6.4888 5.5960 0.0119 12 1 6.2227 6.6427 0.0121 13 6 7.8420 5.2147 0.0181 14 7 8.1636 3.9497 0.0172 15 14 9.1797 6.5185 0.0276 16 1 9.5270 6.8611 1.4301 17 1 10.3841 5.9970 -0.6673 18 1 8.6916 7.7336 -0.6726 19 16 5.7855 2.8980 0.0035 20 6 4.0677 2.5220 -0.0054 21 6 3.4254 1.2810 -0.0113 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 0.2064 2.3179 0.0014 26 1 1.2920 4.4930 0.0000 27 1 9.0972 3.6867 0.0212 28 1 4.0104 0.3732 -0.0100 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396195063.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:12 Heat of formation + Delta-G solvation = -13.534794 kcal Electronic energy + Delta-G solvation = -15750.844345 eV Core-core repulsion = 13049.719443 eV Total energy + Delta-G solvation = -2701.124902 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.78494 -38.79903 -37.17960 -36.45327 -34.30611 -31.87334 -30.69675 -28.34825 -27.05191 -24.63272 -23.25643 -22.19219 -20.13033 -18.98508 -18.02579 -17.20786 -16.76510 -16.61033 -16.46184 -15.66384 -14.72992 -14.72180 -14.59502 -14.35979 -14.00132 -13.67128 -13.58833 -13.47163 -13.28632 -13.10064 -12.51720 -12.34652 -12.25830 -11.93415 -11.72135 -11.70249 -11.04601 -10.86650 -10.20582 -9.10278 -9.03508 -8.27991 -6.78701 0.29252 0.52679 0.95641 1.19462 1.33680 1.51156 1.56232 1.68235 2.08056 2.24185 2.46575 2.65054 2.77026 3.30515 3.90525 3.99621 4.14117 4.43976 4.49979 4.58407 4.67683 4.71470 4.79851 4.82194 5.13966 5.28412 5.48004 5.54703 5.68665 5.78424 5.93740 6.11936 6.33390 6.68154 7.13384 7.73859 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.031091 B = 0.006210 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.368250 B = 4507.469280 C = 5392.662934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.334 6.334 3 C 0.077 3.923 4 C -0.172 4.172 5 C -0.115 4.115 6 C -0.015 4.015 7 C -0.330 4.330 8 C 0.324 3.676 9 N -0.558 5.558 10 C 0.053 3.947 11 C -0.371 4.371 12 H 0.093 0.907 13 C 0.027 3.973 14 N -0.760 5.760 15 Si 1.006 2.994 16 H -0.253 1.253 17 H -0.246 1.246 18 H -0.263 1.263 19 S 0.183 5.817 20 C -0.218 4.218 21 C -0.106 4.106 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.121 0.879 25 H 0.151 0.849 26 H 0.110 0.890 27 H 0.326 0.674 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.502 -7.677 0.037 7.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.030 3.970 4 C -0.192 4.192 5 C -0.135 4.135 6 C -0.023 4.023 7 C -0.342 4.342 8 C 0.018 3.982 9 N -0.241 5.241 10 C -0.069 4.069 11 C -0.405 4.405 12 H 0.111 0.889 13 C -0.197 4.197 14 N -0.384 5.384 15 Si 0.823 3.177 16 H -0.177 1.177 17 H -0.169 1.169 18 H -0.187 1.187 19 S 0.443 5.557 20 C -0.332 4.332 21 C -0.130 4.130 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.139 0.861 25 H 0.169 0.831 26 H 0.128 0.872 27 H 0.141 0.859 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.643 -7.313 0.035 7.341 hybrid contribution -1.010 1.266 0.006 1.620 sum -1.653 -6.047 0.041 6.269 Atomic orbital electron populations 1.23274 0.76987 1.05284 1.01841 1.85947 1.22981 1.26226 1.89767 1.18591 0.91608 0.84477 1.02281 1.20813 1.00542 0.91155 1.06723 1.20476 0.92247 0.97619 1.03193 1.18714 0.93302 0.90693 0.99558 1.15532 0.91097 0.84851 1.42739 1.25312 0.91016 0.91967 0.89935 1.80972 1.10856 1.12192 1.20080 1.21575 0.93786 0.97929 0.93649 1.19704 0.90789 0.95193 1.34787 0.88878 1.27272 1.02121 0.99377 0.90949 1.68404 1.24597 1.18268 1.27135 0.84779 0.75466 0.76927 0.80513 1.17672 1.16896 1.18681 1.84597 0.94418 0.97308 1.79397 1.23493 1.03122 0.95409 1.11212 1.19608 0.91683 0.95579 1.06088 0.92251 0.92247 0.86078 0.83150 0.87213 0.85933 0.85025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.81 113.37 1.11 1.52 15 2 O -0.33 -10.10 10.49 -91.23 -0.96 -11.06 15 3 C 0.08 2.73 6.68 22.56 0.15 2.88 15 4 C -0.17 -5.92 8.95 22.03 0.20 -5.72 15 5 C -0.12 -4.71 9.78 22.54 0.22 -4.49 15 6 C -0.01 -0.68 6.01 -20.18 -0.12 -0.80 15 7 C -0.33 -16.59 5.95 -20.00 -0.12 -16.71 15 8 C 0.32 16.64 14.53 88.33 1.28 17.92 15 9 N -0.56 -28.89 18.54 19.00 0.35 -28.54 15 10 C 0.05 2.61 6.13 22.63 0.14 2.75 15 11 C -0.37 -17.53 8.91 23.04 0.21 -17.33 15 12 H 0.09 4.49 7.37 -2.91 -0.02 4.47 15 13 C 0.03 1.12 5.51 85.46 0.47 1.59 15 14 N -0.76 -30.62 10.54 21.94 0.23 -30.39 15 15 Si 1.01 30.94 29.57 68.60 2.03 32.97 15 16 H -0.25 -7.55 7.11 99.48 0.71 -6.84 15 17 H -0.25 -6.75 7.11 99.48 0.71 -6.04 15 18 H -0.26 -8.50 7.11 99.48 0.71 -7.79 15 19 S 0.18 8.11 20.00 -56.49 -1.13 6.98 15 20 C -0.22 -9.61 6.43 23.05 0.15 -9.46 15 21 C -0.11 -4.14 10.00 22.62 0.23 -3.91 15 22 H 0.06 1.07 7.65 -2.38 -0.02 1.05 15 23 H 0.06 1.07 7.66 -2.39 -0.02 1.05 15 24 H 0.12 1.66 8.14 -2.39 -0.02 1.64 15 25 H 0.15 4.00 6.28 -2.91 -0.02 3.98 15 26 H 0.11 4.35 8.02 -2.91 -0.02 4.33 15 27 H 0.33 11.17 8.29 -92.71 -0.77 10.40 15 28 H 0.13 4.64 8.06 -2.91 -0.02 4.61 15 Total: -1.00 -56.59 270.60 5.65 -50.94 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 1.21 Total: 10.86 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 3.91 Total: -31.77 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: 0.58 Total: -58.93 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -0.96 Total: -11.06 kcal Atomic # 14 Polarization: 30.94 SS G_CDS: 2.03 Total: 32.97 kcal Atomic # 16 Polarization: 8.11 SS G_CDS: -1.13 Total: 6.98 kcal Total: -56.59 5.65 -50.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396195063.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.405 kcal (2) G-P(sol) polarization free energy of solvation -56.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds