Wall clock time and date at job start Mon Mar 30 2020 06:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35278 * 117.00041 * 2 1 4 4 S 1.75170 * 124.43593 * 359.70486 * 3 2 1 5 5 C 1.75962 * 92.68973 * 180.26108 * 4 3 2 6 6 C 1.40496 * 129.68899 * 180.02562 * 5 4 3 7 7 C 1.35746 * 120.93657 * 179.97438 * 6 5 4 8 8 C 1.41085 * 120.02120 * 0.02771 * 7 6 5 9 9 C 1.41239 * 120.13115 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99938 * 154.52980 * 9 8 7 11 11 C 1.39876 * 119.99962 * 334.52162 * 9 8 7 12 12 N 1.30888 * 119.99967 * 343.07500 * 11 9 8 13 13 Si 1.86795 * 120.00063 * 163.06643 * 11 9 8 14 14 H 1.48501 * 109.46828 * 94.96440 * 13 11 9 15 15 H 1.48494 * 109.47484 * 214.96591 * 13 11 9 16 16 H 1.48498 * 109.47217 * 334.97153 * 13 11 9 17 17 C 1.40037 * 119.73913 * 0.02562 * 8 7 6 18 18 C 1.39794 * 110.28681 * 0.02562 * 5 4 3 19 19 C 1.35872 * 124.43710 * 179.97438 * 3 2 1 20 20 C 1.43200 * 123.07873 * 359.71433 * 19 3 2 21 21 N 3.67433 * 171.05712 * 178.92511 * 2 1 3 22 22 H 1.08995 * 109.46849 * 300.00165 * 1 2 3 23 23 H 1.09005 * 109.46761 * 59.99488 * 1 2 3 24 24 H 1.08995 * 109.47159 * 179.97438 * 1 2 3 25 25 H 1.08004 * 119.53104 * 0.02562 * 6 5 4 26 26 H 1.07993 * 119.99343 * 179.97438 * 7 6 5 27 27 H 0.96999 * 119.99946 * 180.02562 * 12 11 9 28 28 H 1.08001 * 119.96643 * 180.02562 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2053 0.0000 4 16 1.2056 2.7438 -0.0074 5 6 2.7099 3.6567 -0.0107 6 6 2.9160 5.0465 -0.0164 7 6 4.1702 5.5660 -0.0175 8 6 5.2898 4.7075 -0.0136 9 6 6.5957 5.2455 -0.0154 10 1 7.4165 4.6721 0.3895 11 6 6.8260 6.5209 -0.5417 12 7 5.9332 7.0790 -1.3192 13 14 8.4075 7.4277 -0.1346 14 1 9.4046 7.1907 -1.2093 15 1 8.1306 8.8827 -0.0283 16 1 8.9448 6.9303 1.1574 17 6 5.1012 3.3199 -0.0091 18 6 3.8046 2.7873 -0.0067 19 6 3.3905 1.3812 0.0005 20 6 4.3208 0.2926 0.0071 21 7 5.0587 -0.5711 0.0107 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 2.0646 5.7109 -0.0190 26 1 4.3110 6.6367 -0.0223 27 1 6.0930 7.9633 -1.6844 28 1 5.9557 2.6594 -0.0057 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396195109.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:14 Heat of formation + Delta-G solvation = 10.955449 kcal Electronic energy + Delta-G solvation = -15732.010410 eV Core-core repulsion = 13031.947485 eV Total energy + Delta-G solvation = -2700.062925 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.54641 -39.63056 -37.65180 -36.19715 -34.38164 -31.83404 -30.12139 -27.94361 -27.40397 -25.13233 -23.03311 -22.46748 -19.83800 -18.95662 -18.66552 -17.43262 -17.06199 -17.04105 -16.23374 -15.36818 -15.14601 -14.90793 -14.84943 -14.35527 -14.20486 -13.82875 -13.51778 -13.36429 -13.08374 -12.92647 -12.76048 -12.61264 -12.38342 -11.92024 -11.83278 -11.34623 -11.29904 -10.76202 -10.20040 -9.00427 -8.79363 -8.49775 -6.40841 -0.23645 0.16457 0.71568 0.92372 1.11475 1.40581 1.45998 1.55099 1.67987 1.99584 2.20122 2.34830 2.65623 3.18491 3.60307 4.15206 4.24027 4.32822 4.32903 4.54976 4.71756 4.87715 4.93483 5.09711 5.24014 5.51431 5.60345 5.76059 5.76716 5.97426 6.21625 6.50147 6.54706 6.82771 6.86873 8.24278 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.033069 B = 0.005660 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.515804 B = 4945.733805 C = 5707.893818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.288 6.288 3 C 0.110 3.890 4 S 0.163 5.837 5 C -0.269 4.269 6 C -0.059 4.059 7 C -0.147 4.147 8 C 0.103 3.897 9 C -0.488 4.488 10 H 0.074 0.926 11 C 0.042 3.958 12 N -0.811 5.811 13 Si 0.982 3.018 14 H -0.265 1.265 15 H -0.258 1.258 16 H -0.262 1.262 17 C -0.249 4.249 18 C 0.013 3.987 19 C -0.145 4.145 20 C 0.306 3.694 21 N -0.477 5.477 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.139 0.861 25 H 0.130 0.870 26 H 0.122 0.878 27 H 0.295 0.705 28 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.289 -2.345 1.720 12.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.200 6.200 3 C -0.057 4.057 4 S 0.422 5.578 5 C -0.383 4.383 6 C -0.081 4.081 7 C -0.168 4.168 8 C 0.099 3.901 9 C -0.517 4.517 10 H 0.092 0.908 11 C -0.175 4.175 12 N -0.436 5.436 13 Si 0.802 3.198 14 H -0.190 1.190 15 H -0.182 1.182 16 H -0.185 1.185 17 C -0.271 4.271 18 C 0.007 3.993 19 C -0.163 4.163 20 C -0.008 4.008 21 N -0.156 5.156 22 H 0.098 0.902 23 H 0.097 0.903 24 H 0.157 0.843 25 H 0.148 0.852 26 H 0.139 0.861 27 H 0.106 0.894 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.669 -3.279 1.569 13.180 hybrid contribution 2.068 0.347 -0.040 2.097 sum -10.601 -2.932 1.528 11.105 Atomic orbital electron populations 1.23837 0.74124 1.07481 1.03937 1.85926 1.24883 1.22266 1.86939 1.23599 0.93726 0.90791 0.97603 1.83063 1.04738 0.90292 1.79691 1.21795 0.94585 0.97302 1.24612 1.20051 0.97243 0.91228 0.99528 1.21057 0.91457 0.99928 1.04353 1.17726 0.94352 0.90807 0.87195 1.19838 0.94639 1.01231 1.35981 0.90808 1.26710 1.01986 0.97164 0.91671 1.69829 1.36364 1.16082 1.21296 0.85187 0.77021 0.77863 0.79702 1.19035 1.18244 1.18540 1.20601 0.93236 0.94670 1.18624 1.18094 0.94068 0.87846 0.99306 1.15583 0.87913 0.88610 1.24206 1.25074 0.92221 0.91765 0.91719 1.81074 1.09819 1.11719 1.13035 0.90157 0.90278 0.84315 0.85175 0.86054 0.89426 0.90101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 10.23 113.37 1.16 1.17 15 2 O -0.29 -7.73 10.26 -85.63 -0.88 -8.60 15 3 C 0.11 3.54 7.15 67.27 0.48 4.02 15 4 S 0.16 4.61 21.82 -56.49 -1.23 3.38 15 5 C -0.27 -10.73 6.46 23.20 0.15 -10.58 15 6 C -0.06 -2.42 9.98 22.24 0.22 -2.20 15 7 C -0.15 -7.06 8.61 22.39 0.19 -6.87 15 8 C 0.10 5.37 5.55 -21.41 -0.12 5.25 15 9 C -0.49 -25.59 9.03 23.40 0.21 -25.38 15 10 H 0.07 3.84 7.90 -2.91 -0.02 3.81 15 11 C 0.04 1.99 5.15 85.23 0.44 2.43 15 12 N -0.81 -39.20 10.96 21.82 0.24 -38.96 15 13 Si 0.98 36.34 29.59 68.60 2.03 38.37 15 14 H -0.27 -9.63 7.11 99.48 0.71 -8.93 15 15 H -0.26 -8.87 7.11 99.48 0.71 -8.17 15 16 H -0.26 -9.71 7.11 99.48 0.71 -9.00 15 17 C -0.25 -12.67 9.57 23.18 0.22 -12.45 15 18 C 0.01 0.59 6.00 -20.25 -0.12 0.47 15 19 C -0.15 -5.81 5.89 -20.41 -0.12 -5.93 15 20 C 0.31 13.03 15.16 88.33 1.34 14.37 15 21 N -0.48 -21.05 18.54 19.00 0.35 -20.69 15 22 H 0.08 0.97 8.02 -2.39 -0.02 0.95 15 23 H 0.08 0.98 8.01 -2.38 -0.02 0.96 15 24 H 0.14 1.24 8.14 -2.39 -0.02 1.22 15 25 H 0.13 4.43 8.06 -2.91 -0.02 4.41 15 26 H 0.12 5.91 6.18 -2.91 -0.02 5.89 15 27 H 0.29 12.68 8.30 -92.71 -0.77 11.91 15 28 H 0.08 4.23 8.03 -2.91 -0.02 4.21 15 Total: -1.00 -60.71 273.89 5.77 -54.94 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 1.21 Total: 7.26 kcal Atomic # 6 Polarization: -39.75 SS G_CDS: 4.06 Total: -35.69 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 0.59 Total: -59.65 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.88 Total: -8.60 kcal Atomic # 14 Polarization: 36.34 SS G_CDS: 2.03 Total: 38.37 kcal Atomic # 16 Polarization: 4.61 SS G_CDS: -1.23 Total: 3.38 kcal Total: -60.71 5.77 -54.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396195109.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.898 kcal (2) G-P(sol) polarization free energy of solvation -60.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds