Wall clock time and date at job start Mon Mar 30 2020 06:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35860 * 116.99831 * 2 1 4 4 C 1.39204 * 119.99914 * 359.97438 * 3 2 1 5 5 C 1.37189 * 120.19876 * 180.02562 * 4 3 2 6 6 C 1.40930 * 120.54319 * 0.22829 * 5 4 3 7 7 C 1.39348 * 119.16329 * 359.49534 * 6 5 4 8 8 C 1.38052 * 119.99707 * 180.02562 * 3 2 1 9 9 S 1.75880 * 110.81478 * 180.31692 * 7 6 5 10 10 C 1.75171 * 92.82934 * 359.68776 * 9 7 6 11 11 C 1.43199 * 124.63543 * 179.97438 * 10 9 7 12 12 N 8.72599 * 132.79847 * 359.71878 * 2 1 3 13 13 C 1.38685 * 110.73071 * 0.44614 * 10 9 7 14 14 C 1.39676 * 123.34803 * 179.49874 * 13 10 9 15 15 H 1.08005 * 119.99573 * 322.39416 * 14 13 10 16 16 C 1.40402 * 120.00568 * 142.39409 * 14 13 10 17 17 N 1.30630 * 119.99516 * 339.53378 * 16 14 13 18 18 Si 1.86794 * 120.00455 * 159.53349 * 16 14 13 19 19 H 1.48503 * 109.47231 * 89.99858 * 18 16 14 20 20 H 1.48499 * 109.47668 * 209.99934 * 18 16 14 21 21 H 1.48507 * 109.47212 * 330.00358 * 18 16 14 22 22 H 1.08998 * 109.46782 * 60.00707 * 1 2 3 23 23 H 1.08999 * 109.46660 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 300.00319 * 1 2 3 25 25 H 1.07997 * 119.89727 * 0.02562 * 4 3 2 26 26 H 1.07999 * 119.72532 * 179.97438 * 5 4 3 27 27 H 1.07997 * 119.78065 * 359.97438 * 8 3 2 28 28 H 0.97003 * 119.99298 * 180.73836 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 6 1.2876 2.3780 -0.0005 5 6 1.9061 3.6025 -0.0011 6 6 3.3124 3.6946 -0.0059 7 6 4.0695 2.5247 0.0005 8 6 3.4244 1.2828 -0.0005 9 16 5.7892 2.8932 0.0018 10 6 5.5072 4.6220 -0.0159 11 6 6.5390 5.6149 -0.0221 12 7 7.3577 6.4026 -0.0314 13 6 4.1481 4.8977 -0.0123 14 6 3.6276 6.1939 -0.0138 15 1 4.1158 6.9725 0.5535 16 6 2.4698 6.4847 -0.7529 17 7 2.1056 5.7001 -1.7318 18 14 1.4501 7.9933 -0.3364 19 1 1.9419 9.1550 -1.1201 20 1 0.0265 7.7369 -0.6721 21 1 1.5714 8.2878 1.1141 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.2092 2.3195 -0.0005 26 1 1.3104 4.5033 -0.0019 27 1 4.0091 0.3748 -0.0005 28 1 1.3116 5.9069 -2.2493 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396195113.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:04 Heat of formation + Delta-G solvation = 19.026615 kcal Electronic energy + Delta-G solvation = -16090.151666 eV Core-core repulsion = 13390.438733 eV Total energy + Delta-G solvation = -2699.712933 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.60271 -37.58681 -35.38778 -34.40557 -32.55947 -30.37426 -28.63773 -26.81673 -26.59660 -22.65484 -22.07905 -20.31030 -18.42629 -17.55282 -16.44368 -15.67609 -15.45561 -15.32960 -14.93132 -14.31143 -13.44312 -13.16274 -13.03275 -12.92520 -12.27878 -12.15917 -12.13378 -11.83627 -11.61845 -11.41117 -11.19984 -11.08697 -10.79868 -10.58448 -10.19381 -9.69896 -9.57110 -9.23717 -8.56272 -7.38528 -7.26431 -6.75569 -4.82149 1.57696 1.91920 2.47402 2.67925 2.85661 2.90534 3.13097 3.17676 3.63289 3.66221 4.24764 4.39690 4.44147 4.98654 5.16601 5.28408 5.40606 5.45201 5.56278 5.66379 5.92463 6.16224 6.17581 6.50292 6.64232 6.85099 6.92388 7.03353 7.21169 7.47141 7.81449 7.92631 8.19416 8.32553 8.97168 9.65346 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.016010 B = 0.009573 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.480098 B = 2924.253592 C = 4537.579805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.322 6.322 3 C 0.132 3.868 4 C -0.231 4.231 5 C 0.007 3.993 6 C -0.081 4.081 7 C -0.075 4.075 8 C -0.145 4.145 9 S 0.051 5.949 10 C -0.345 4.345 11 C 0.333 3.667 12 N -0.520 5.520 13 C 0.185 3.815 14 C -0.423 4.423 15 H 0.095 0.905 16 C 0.080 3.920 17 N -0.756 5.756 18 Si 0.908 3.092 19 H -0.263 1.263 20 H -0.269 1.269 21 H -0.253 1.253 22 H 0.053 0.947 23 H 0.093 0.907 24 H 0.052 0.948 25 H 0.121 0.879 26 H 0.126 0.874 27 H 0.123 0.877 28 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.999 -7.257 1.774 11.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.236 6.236 3 C 0.086 3.914 4 C -0.252 4.252 5 C -0.013 4.013 6 C -0.090 4.090 7 C -0.191 4.191 8 C -0.170 4.170 9 S 0.310 5.690 10 C -0.465 4.465 11 C 0.024 3.976 12 N -0.203 5.203 13 C 0.173 3.827 14 C -0.454 4.454 15 H 0.113 0.887 16 C -0.144 4.144 17 N -0.378 5.378 18 Si 0.731 3.269 19 H -0.187 1.187 20 H -0.194 1.194 21 H -0.176 1.176 22 H 0.071 0.929 23 H 0.111 0.889 24 H 0.071 0.929 25 H 0.138 0.862 26 H 0.144 0.856 27 H 0.141 0.859 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.446 -7.077 1.574 9.701 hybrid contribution -2.392 1.314 -0.074 2.730 sum -8.838 -5.762 1.500 10.657 Atomic orbital electron populations 1.22951 0.79101 1.03092 1.01284 1.85986 1.20794 1.27469 1.89349 1.18557 0.91647 0.83647 0.97587 1.20904 0.99209 0.92297 1.12812 1.20869 0.93003 0.96418 0.91016 1.19221 0.93324 0.91862 1.04583 1.22260 0.97876 0.95650 1.03297 1.19356 0.90950 0.95792 1.10903 1.82937 1.00757 1.00762 1.84544 1.18644 0.91567 0.90945 1.45360 1.24319 0.91191 0.91600 0.90450 1.81041 1.11104 1.10015 1.18095 1.17302 0.87659 0.92057 0.85680 1.19245 1.06938 0.95183 1.24032 0.88680 1.26116 0.96427 0.98734 0.93165 1.69774 1.21535 1.35531 1.10965 0.86267 0.78649 0.80907 0.81121 1.18737 1.19369 1.17645 0.92859 0.88888 0.92921 0.86157 0.85596 0.85905 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.33 15 2 O -0.32 -4.93 10.49 -19.30 -0.20 -5.14 15 3 C 0.13 2.33 6.67 -39.29 -0.26 2.07 15 4 C -0.23 -4.01 9.00 -39.60 -0.36 -4.37 15 5 C 0.01 0.14 8.38 -38.94 -0.33 -0.19 15 6 C -0.08 -1.82 5.55 -105.14 -0.58 -2.41 15 7 C -0.07 -1.58 6.41 -38.53 -0.25 -1.83 15 8 C -0.14 -2.73 10.00 -39.01 -0.39 -3.12 15 9 S 0.05 1.07 23.12 -107.50 -2.49 -1.42 15 10 C -0.35 -8.37 6.31 -37.49 -0.24 -8.61 15 11 C 0.33 8.35 15.19 -22.47 -0.34 8.01 15 12 N -0.52 -13.27 18.54 41.84 0.78 -12.49 15 13 C 0.18 4.50 5.42 -105.87 -0.57 3.93 15 14 C -0.42 -10.16 8.51 -38.23 -0.33 -10.49 15 15 H 0.10 2.30 7.90 -52.48 -0.41 1.89 15 16 C 0.08 1.75 4.01 -17.25 -0.07 1.68 15 17 N -0.76 -16.73 10.75 55.57 0.60 -16.14 15 18 Si 0.91 16.32 29.61 -169.99 -5.03 11.29 15 19 H -0.26 -4.83 7.11 56.52 0.40 -4.43 15 20 H -0.27 -4.58 7.11 56.52 0.40 -4.18 15 21 H -0.25 -4.56 7.11 56.52 0.40 -4.16 15 22 H 0.05 0.54 7.66 -51.93 -0.40 0.14 15 23 H 0.09 0.74 8.14 -51.93 -0.42 0.32 15 24 H 0.05 0.52 7.66 -51.93 -0.40 0.12 15 25 H 0.12 1.72 6.29 -52.49 -0.33 1.39 15 26 H 0.13 2.51 5.90 -52.49 -0.31 2.20 15 27 H 0.12 2.07 8.06 -52.49 -0.42 1.65 15 28 H 0.29 5.78 8.29 -40.82 -0.34 5.44 15 LS Contribution 269.00 15.07 4.05 4.05 Total: -1.00 -26.60 269.00 -6.84 -33.44 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -1.83 Total: 0.39 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -2.72 Total: -13.99 kcal Atomic # 7 Polarization: -30.00 SS G_CDS: 1.37 Total: -28.63 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.20 Total: -5.14 kcal Atomic # 14 Polarization: 16.32 SS G_CDS: -5.03 Total: 11.29 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.49 Total: -1.42 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -26.60 -6.84 -33.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396195113.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.471 kcal (2) G-P(sol) polarization free energy of solvation -26.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds