Wall clock time and date at job start Mon Mar 30 2020 06:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35860 * 116.99831 * 2 1 4 4 C 1.39204 * 119.99914 * 359.97438 * 3 2 1 5 5 C 1.37189 * 120.19876 * 180.02562 * 4 3 2 6 6 C 1.40930 * 120.54319 * 0.22829 * 5 4 3 7 7 C 1.39348 * 119.16329 * 359.49534 * 6 5 4 8 8 C 1.38052 * 119.99707 * 180.02562 * 3 2 1 9 9 S 1.75880 * 110.81478 * 180.31692 * 7 6 5 10 10 C 1.75171 * 92.82934 * 359.68776 * 9 7 6 11 11 C 1.43199 * 124.63543 * 179.97438 * 10 9 7 12 12 N 8.72599 * 132.79847 * 359.71878 * 2 1 3 13 13 C 1.38685 * 110.73071 * 0.44614 * 10 9 7 14 14 C 1.39676 * 123.34803 * 179.49874 * 13 10 9 15 15 H 1.08005 * 119.99573 * 322.39416 * 14 13 10 16 16 C 1.40402 * 120.00568 * 142.39409 * 14 13 10 17 17 N 1.30630 * 119.99516 * 339.53378 * 16 14 13 18 18 Si 1.86794 * 120.00455 * 159.53349 * 16 14 13 19 19 H 1.48503 * 109.47231 * 89.99858 * 18 16 14 20 20 H 1.48499 * 109.47668 * 209.99934 * 18 16 14 21 21 H 1.48507 * 109.47212 * 330.00358 * 18 16 14 22 22 H 1.08998 * 109.46782 * 60.00707 * 1 2 3 23 23 H 1.08999 * 109.46660 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 300.00319 * 1 2 3 25 25 H 1.07997 * 119.89727 * 0.02562 * 4 3 2 26 26 H 1.07999 * 119.72532 * 179.97438 * 5 4 3 27 27 H 1.07997 * 119.78065 * 359.97438 * 8 3 2 28 28 H 0.97003 * 119.99298 * 180.73836 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 6 1.2876 2.3780 -0.0005 5 6 1.9061 3.6025 -0.0011 6 6 3.3124 3.6946 -0.0059 7 6 4.0695 2.5247 0.0005 8 6 3.4244 1.2828 -0.0005 9 16 5.7892 2.8932 0.0018 10 6 5.5072 4.6220 -0.0159 11 6 6.5390 5.6149 -0.0221 12 7 7.3577 6.4026 -0.0314 13 6 4.1481 4.8977 -0.0123 14 6 3.6276 6.1939 -0.0138 15 1 4.1158 6.9725 0.5535 16 6 2.4698 6.4847 -0.7529 17 7 2.1056 5.7001 -1.7318 18 14 1.4501 7.9933 -0.3364 19 1 1.9419 9.1550 -1.1201 20 1 0.0265 7.7369 -0.6721 21 1 1.5714 8.2878 1.1141 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.2092 2.3195 -0.0005 26 1 1.3104 4.5033 -0.0019 27 1 4.0091 0.3748 -0.0005 28 1 1.3116 5.9069 -2.2493 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396195113.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:04 Heat of formation + Delta-G solvation = 5.325210 kcal Electronic energy + Delta-G solvation = -16090.745803 eV Core-core repulsion = 13390.438733 eV Total energy + Delta-G solvation = -2700.307071 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.96244 -39.04305 -37.22136 -36.10499 -34.22729 -31.83507 -30.10376 -28.39504 -27.86781 -24.23870 -23.57115 -21.91754 -20.03130 -18.97910 -18.08585 -17.20793 -16.74869 -16.53208 -16.49009 -15.84435 -14.98278 -14.74810 -14.69397 -14.33903 -13.88196 -13.81045 -13.55843 -13.48348 -13.32668 -12.94154 -12.57832 -12.45169 -12.17729 -12.13493 -11.73089 -11.25687 -11.20075 -10.80544 -10.15733 -9.02458 -8.86446 -8.38088 -6.61732 -0.04616 0.42336 0.85477 1.16225 1.36238 1.44592 1.50635 1.59989 2.13883 2.45421 2.49078 2.53018 2.76294 3.22312 3.74356 3.97129 4.20008 4.36492 4.49123 4.51102 4.61961 4.67688 4.82032 4.96264 5.04955 5.30466 5.38506 5.48911 5.74264 5.78015 6.10432 6.41311 6.55334 6.56234 7.03244 8.01892 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.016010 B = 0.009573 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.480098 B = 2924.253592 C = 4537.579805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.328 6.328 3 C 0.147 3.853 4 C -0.219 4.219 5 C -0.004 4.004 6 C -0.113 4.113 7 C -0.085 4.085 8 C -0.155 4.155 9 S 0.067 5.933 10 C -0.384 4.384 11 C 0.332 3.668 12 N -0.544 5.544 13 C 0.169 3.831 14 C -0.449 4.449 15 H 0.080 0.920 16 C 0.055 3.945 17 N -0.770 5.770 18 Si 0.973 3.027 19 H -0.268 1.268 20 H -0.244 1.244 21 H -0.257 1.257 22 H 0.062 0.938 23 H 0.123 0.877 24 H 0.065 0.935 25 H 0.157 0.843 26 H 0.125 0.875 27 H 0.140 0.860 28 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.034 -8.469 1.646 14.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.241 6.241 3 C 0.099 3.901 4 C -0.240 4.240 5 C -0.024 4.024 6 C -0.122 4.122 7 C -0.201 4.201 8 C -0.180 4.180 9 S 0.325 5.675 10 C -0.504 4.504 11 C 0.025 3.975 12 N -0.228 5.228 13 C 0.158 3.842 14 C -0.479 4.479 15 H 0.098 0.902 16 C -0.169 4.169 17 N -0.392 5.392 18 Si 0.792 3.208 19 H -0.193 1.193 20 H -0.167 1.167 21 H -0.180 1.180 22 H 0.080 0.920 23 H 0.142 0.858 24 H 0.084 0.916 25 H 0.175 0.825 26 H 0.143 0.857 27 H 0.158 0.842 28 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.494 -8.316 1.438 12.703 hybrid contribution -1.631 1.548 -0.072 2.250 sum -11.125 -6.768 1.367 13.093 Atomic orbital electron populations 1.23375 0.76329 1.05643 1.02321 1.86006 1.23549 1.25975 1.88619 1.18615 0.91385 0.84690 0.95435 1.21227 1.01029 0.91053 1.10666 1.20943 0.92068 0.97618 0.91740 1.19297 0.94492 0.91402 1.06966 1.22420 0.97570 0.96323 1.03748 1.19586 0.92037 0.95452 1.10888 1.82613 1.01364 0.98359 1.85171 1.18964 0.91685 0.92523 1.47182 1.24658 0.91168 0.91572 0.90114 1.80993 1.11770 1.10477 1.19556 1.17674 0.88126 0.93183 0.85265 1.19427 1.08562 0.95019 1.24879 0.90204 1.26750 0.96409 1.01380 0.92396 1.69760 1.22003 1.36574 1.10854 0.85322 0.78147 0.76932 0.80364 1.19307 1.16743 1.18040 0.91953 0.85837 0.91615 0.82521 0.85740 0.84237 0.88145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.41 15 2 O -0.33 -8.79 10.49 -91.98 -0.96 -9.76 15 3 C 0.15 4.74 6.67 22.46 0.15 4.89 15 4 C -0.22 -6.95 9.00 22.25 0.20 -6.75 15 5 C 0.00 -0.15 8.38 22.68 0.19 0.04 15 6 C -0.11 -5.11 5.55 -20.20 -0.11 -5.23 15 7 C -0.08 -3.57 6.41 22.95 0.15 -3.42 15 8 C -0.15 -5.56 10.00 22.64 0.23 -5.34 15 9 S 0.07 2.86 23.12 -56.49 -1.31 1.55 15 10 C -0.38 -19.32 6.31 23.62 0.15 -19.17 15 11 C 0.33 17.37 15.19 88.33 1.34 18.71 15 12 N -0.54 -28.83 18.54 19.00 0.35 -28.48 15 13 C 0.17 8.49 5.42 -20.67 -0.11 8.38 15 14 C -0.45 -22.13 8.51 23.14 0.20 -21.93 15 15 H 0.08 4.05 7.90 -2.91 -0.02 4.03 15 16 C 0.05 2.35 4.01 85.40 0.34 2.70 15 17 N -0.77 -33.43 10.75 21.91 0.24 -33.19 15 18 Si 0.97 32.59 29.61 68.60 2.03 34.62 15 19 H -0.27 -9.20 7.11 99.48 0.71 -8.49 15 20 H -0.24 -7.19 7.11 99.48 0.71 -6.48 15 21 H -0.26 -8.70 7.11 99.48 0.71 -7.99 15 22 H 0.06 0.97 7.66 -2.39 -0.02 0.95 15 23 H 0.12 1.36 8.14 -2.39 -0.02 1.34 15 24 H 0.07 0.97 7.66 -2.39 -0.02 0.95 15 25 H 0.16 3.75 6.29 -2.91 -0.02 3.73 15 26 H 0.12 4.80 5.90 -2.91 -0.02 4.78 15 27 H 0.14 4.45 8.06 -2.91 -0.02 4.42 15 28 H 0.31 11.56 8.29 -92.71 -0.77 10.79 15 Total: -1.00 -58.33 269.00 5.39 -52.93 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: 1.21 Total: 8.04 kcal Atomic # 6 Polarization: -29.55 SS G_CDS: 3.83 Total: -25.72 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: 0.59 Total: -61.67 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.96 Total: -9.76 kcal Atomic # 14 Polarization: 32.59 SS G_CDS: 2.03 Total: 34.62 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -1.31 Total: 1.55 kcal Total: -58.33 5.39 -52.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396195113.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.259 kcal (2) G-P(sol) polarization free energy of solvation -58.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds