Wall clock time and date at job start Mon Mar 30 2020 06:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35692 * 116.99906 * 2 1 4 4 C 1.32880 * 124.67184 * 179.97438 * 3 2 1 5 5 C 1.40591 * 115.68654 * 180.02562 * 4 3 2 6 6 C 1.39400 * 112.58390 * 0.30446 * 5 4 3 7 7 S 1.75503 * 124.67133 * 0.02754 * 3 2 1 8 8 C 1.42009 * 119.83753 * 180.31469 * 6 5 4 9 9 C 1.40583 * 119.95579 * 179.72479 * 8 6 5 10 10 H 1.08002 * 120.00468 * 329.66335 * 9 8 6 11 11 C 1.40193 * 119.99636 * 149.93889 * 9 8 6 12 12 N 1.30700 * 119.99814 * 161.48029 * 11 9 8 13 13 Si 1.86795 * 120.00364 * 341.47798 * 11 9 8 14 14 H 1.48506 * 109.47054 * 95.41674 * 13 11 9 15 15 H 1.48503 * 109.47538 * 215.41619 * 13 11 9 16 16 H 1.48501 * 109.47187 * 335.42310 * 13 11 9 17 17 C 1.40831 * 120.08346 * 359.44952 * 8 6 5 18 18 C 1.36133 * 120.18056 * 0.25500 * 17 8 6 19 19 C 1.39618 * 120.77934 * 359.97438 * 18 17 8 20 20 C 1.43201 * 119.72346 * 180.02562 * 19 18 17 21 21 N 5.90709 * 164.28269 * 359.97438 * 2 1 3 22 22 H 1.08999 * 109.46797 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46874 * 299.99737 * 1 2 3 24 24 H 1.08998 * 109.46645 * 60.00286 * 1 2 3 25 25 H 1.07994 * 122.15853 * 0.04574 * 4 3 2 26 26 H 0.96997 * 120.00196 * 180.02562 * 12 11 9 27 27 H 1.07996 * 119.90935 * 180.27261 * 17 8 6 28 28 H 1.07997 * 119.61229 * 180.02562 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.3619 1.3864 0.0005 5 6 3.7967 2.7234 0.0010 6 6 2.7383 3.6306 0.0077 7 16 1.2122 2.7539 0.0007 8 6 3.0033 5.0257 0.0023 9 6 1.9378 5.9427 0.0032 10 1 1.0002 5.6817 -0.4651 11 6 2.0941 7.1983 0.6068 12 7 1.2749 8.1726 0.3101 13 14 3.4732 7.4790 1.8351 14 1 4.6431 8.0722 1.1388 15 1 3.0081 8.4053 2.8985 16 1 3.8649 6.1826 2.4443 17 6 4.3323 5.4917 0.0019 18 6 5.3676 4.6077 0.0015 19 6 5.1320 3.2316 0.0019 20 6 6.2379 2.3219 0.0020 21 7 7.1152 1.6002 -0.0007 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 4.0537 0.5571 0.0002 26 1 1.3833 9.0414 0.7275 27 1 4.5307 6.5533 0.0022 28 1 6.3831 4.9752 0.0016 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396195680.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:17 Heat of formation + Delta-G solvation = 24.227951 kcal Electronic energy + Delta-G solvation = -15961.221755 eV Core-core repulsion = 13261.734369 eV Total energy + Delta-G solvation = -2699.487386 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.09294 -38.32669 -35.59213 -34.84760 -33.45718 -30.94305 -28.70620 -26.68852 -26.16833 -22.94724 -21.78221 -20.41422 -18.89537 -17.91291 -16.81529 -15.71009 -15.66165 -15.60561 -15.02789 -14.09510 -13.67040 -13.52011 -13.26983 -13.05437 -12.44514 -12.34275 -12.09119 -12.04653 -11.86133 -11.63276 -11.22821 -11.06243 -10.78986 -10.53727 -10.23140 -9.83725 -9.74576 -9.48852 -8.59000 -7.52725 -7.46849 -7.10143 -4.95465 1.33327 1.87561 2.04323 2.60995 2.85110 2.97741 3.01215 3.12200 3.40988 3.61463 3.62802 3.69975 4.41028 5.01275 5.08422 5.12836 5.18693 5.44883 5.70210 5.85340 5.94450 6.25575 6.33232 6.46002 6.74266 6.88671 6.91859 7.20233 7.25649 7.41286 7.56997 7.80034 8.06750 8.22223 8.48259 9.50440 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.017537 B = 0.009121 C = 0.006268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.239363 B = 3069.173387 C = 4465.740744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.287 6.287 3 C 0.030 3.970 4 C -0.189 4.189 5 C 0.049 3.951 6 C -0.218 4.218 7 S 0.068 5.932 8 C 0.146 3.854 9 C -0.403 4.403 10 H 0.101 0.899 11 C 0.082 3.918 12 N -0.767 5.767 13 Si 0.916 3.084 14 H -0.261 1.261 15 H -0.285 1.285 16 H -0.235 1.235 17 C -0.255 4.255 18 C 0.005 3.995 19 C -0.178 4.178 20 C 0.290 3.710 21 N -0.501 5.501 22 H 0.102 0.898 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.133 0.867 26 H 0.297 0.703 27 H 0.115 0.885 28 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.832 -3.808 1.126 5.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.202 6.202 3 C -0.130 4.130 4 C -0.220 4.220 5 C 0.039 3.961 6 C -0.333 4.333 7 S 0.328 5.672 8 C 0.139 3.861 9 C -0.429 4.429 10 H 0.119 0.881 11 C -0.143 4.143 12 N -0.387 5.387 13 Si 0.740 3.260 14 H -0.186 1.186 15 H -0.212 1.212 16 H -0.157 1.157 17 C -0.278 4.278 18 C -0.017 4.017 19 C -0.186 4.186 20 C -0.020 4.020 21 N -0.180 5.180 22 H 0.121 0.879 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.150 0.850 26 H 0.108 0.892 27 H 0.133 0.867 28 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.107 -4.485 1.111 6.182 hybrid contribution 1.237 0.323 0.397 1.338 sum -2.870 -4.162 1.508 5.276 Atomic orbital electron populations 1.23186 0.78195 1.04070 1.02113 1.85922 1.21004 1.23603 1.89623 1.23020 0.95450 0.88630 1.05913 1.19239 0.92797 0.97093 1.12902 1.17250 0.92099 0.90076 0.96715 1.22105 0.92537 0.96895 1.21795 1.83912 1.08819 0.94174 1.80321 1.17034 0.92924 0.88535 0.87620 1.19759 1.00072 0.95880 1.27192 0.88113 1.26453 0.97061 0.94216 0.96617 1.69603 1.33391 1.02755 1.32917 0.86183 0.79588 0.80816 0.79375 1.18648 1.21172 1.15727 1.20365 0.91725 0.98226 1.17456 1.20076 0.98103 0.90717 0.92775 1.15046 0.85297 0.89726 1.28553 1.25893 0.92446 0.92434 0.91250 1.81085 1.11410 1.10115 1.15425 0.87927 0.92246 0.92287 0.84962 0.89221 0.86742 0.87384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.24 101.05 1.04 1.27 15 2 O -0.29 -4.59 10.56 -18.78 -0.20 -4.79 15 3 C 0.03 0.55 7.15 28.88 0.21 0.75 15 4 C -0.19 -3.72 9.72 -40.54 -0.39 -4.12 15 5 C 0.05 1.03 5.85 -106.79 -0.62 0.41 15 6 C -0.22 -4.69 6.36 -37.71 -0.24 -4.93 15 7 S 0.07 1.25 21.64 -107.50 -2.33 -1.08 15 8 C 0.15 3.26 5.13 -106.59 -0.55 2.71 15 9 C -0.40 -9.32 9.30 -37.96 -0.35 -9.67 15 10 H 0.10 2.44 8.00 -52.49 -0.42 2.02 15 11 C 0.08 1.82 5.39 -17.30 -0.09 1.73 15 12 N -0.77 -17.33 13.92 55.56 0.77 -16.55 15 13 Si 0.92 17.76 24.51 -169.99 -4.17 13.60 15 14 H -0.26 -4.83 6.70 56.52 0.38 -4.46 15 15 H -0.28 -5.35 7.11 56.52 0.40 -4.95 15 16 H -0.23 -4.73 6.88 56.52 0.39 -4.34 15 17 C -0.26 -5.35 7.08 -39.36 -0.28 -5.63 15 18 C 0.00 0.09 9.61 -39.82 -0.38 -0.29 15 19 C -0.18 -3.68 5.83 -105.67 -0.62 -4.29 15 20 C 0.29 6.01 14.84 -22.47 -0.33 5.68 15 21 N -0.50 -10.80 18.54 41.84 0.78 -10.02 15 22 H 0.10 0.85 8.14 -51.93 -0.42 0.42 15 23 H 0.06 0.64 8.03 -51.93 -0.42 0.22 15 24 H 0.06 0.64 8.03 -51.93 -0.42 0.22 15 25 H 0.13 2.53 7.93 -52.49 -0.42 2.12 15 26 H 0.30 5.97 8.29 -40.82 -0.34 5.64 15 27 H 0.12 2.30 4.70 -52.49 -0.25 2.05 15 28 H 0.11 1.84 8.06 -52.49 -0.42 1.41 15 LS Contribution 267.52 15.07 4.03 4.03 Total: -1.00 -25.17 267.52 -5.66 -30.83 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -1.93 Total: 0.37 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -2.62 Total: -16.38 kcal Atomic # 7 Polarization: -28.12 SS G_CDS: 1.55 Total: -26.57 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.20 Total: -4.79 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -4.17 Total: 13.60 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.33 Total: -1.08 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -25.17 -5.66 -30.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396195680.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.058 kcal (2) G-P(sol) polarization free energy of solvation -25.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds