Wall clock time and date at job start Mon Mar 30 2020 06:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35738 * 117.00297 * 2 1 4 4 C 1.32450 * 124.34053 * 179.97438 * 3 2 1 5 5 C 1.45550 * 114.76251 * 179.97438 * 4 3 2 6 6 C 1.41016 * 128.95738 * 179.97438 * 5 4 3 7 7 C 1.39236 * 120.79139 * 179.97438 * 6 5 4 8 8 C 1.43198 * 119.81149 * 180.28155 * 7 6 5 9 9 N 8.40751 * 138.59464 * 359.87685 * 2 1 3 10 10 C 1.39379 * 120.37288 * 0.02562 * 7 6 5 11 11 C 1.40067 * 119.73419 * 359.97438 * 10 7 6 12 12 C 1.41043 * 119.99085 * 179.97438 * 11 10 7 13 13 H 1.07997 * 119.99991 * 205.09833 * 12 11 10 14 14 C 1.39885 * 120.00144 * 25.10541 * 12 11 10 15 15 N 1.30892 * 119.99880 * 17.93397 * 14 12 11 16 16 Si 1.86799 * 120.00144 * 197.94015 * 14 12 11 17 17 H 1.48501 * 109.47183 * 59.99602 * 16 14 12 18 18 H 1.48500 * 109.46791 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46894 * 299.99322 * 16 14 12 20 20 C 1.39586 * 111.86046 * 0.02562 * 5 4 3 21 21 S 1.75273 * 124.33962 * 359.97438 * 3 2 1 22 22 H 1.09001 * 109.47835 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47250 * 299.99738 * 1 2 3 24 24 H 1.09003 * 109.47064 * 60.00086 * 1 2 3 25 25 H 1.08003 * 122.62405 * 359.95769 * 4 3 2 26 26 H 1.07997 * 119.60740 * 0.02752 * 6 5 4 27 27 H 1.08002 * 120.12290 * 179.97438 * 10 7 6 28 28 H 0.96994 * 120.00222 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.3589 1.3786 0.0005 5 6 3.7948 2.7673 -0.0002 6 6 5.1065 3.2848 0.0005 7 6 5.3305 4.6591 -0.0009 8 6 6.6714 5.1618 -0.0062 9 7 7.7350 5.5606 -0.0120 10 6 4.2571 5.5481 -0.0025 11 6 2.9463 5.0545 -0.0033 12 6 1.8560 5.9493 -0.0044 13 1 0.9010 5.6373 0.3917 14 6 2.0116 7.2408 -0.5188 15 7 3.0226 7.5153 -1.3035 16 14 0.7767 8.5737 -0.0856 17 1 0.7593 8.7732 1.3858 18 1 1.1641 9.8429 -0.7523 19 1 -0.5747 8.1648 -0.5458 20 6 2.7144 3.6511 -0.0007 21 16 1.2047 2.7474 -0.0006 22 1 -0.3635 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 4.0526 0.5508 0.0016 26 1 5.9474 2.6072 0.0014 27 1 4.4355 6.6133 -0.0032 28 1 3.1304 8.4107 -1.6604 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396195722.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:20 Heat of formation + Delta-G solvation = 11.579182 kcal Electronic energy + Delta-G solvation = -15790.854469 eV Core-core repulsion = 13090.818591 eV Total energy + Delta-G solvation = -2700.035878 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.24352 -39.60596 -37.53010 -36.28678 -34.55154 -32.10177 -29.97071 -27.65361 -27.41003 -24.80992 -23.27181 -22.28746 -19.67997 -19.04342 -18.30523 -17.28104 -16.95420 -16.75824 -16.42701 -15.51331 -15.03241 -14.95184 -14.88329 -14.35043 -13.92811 -13.79309 -13.69478 -13.35673 -13.02042 -12.80978 -12.80041 -12.48960 -12.22895 -12.16322 -11.76340 -11.26590 -11.18244 -10.97246 -10.07376 -8.96513 -8.74622 -8.54505 -6.41655 0.10427 0.28447 0.53940 1.21940 1.30964 1.42651 1.53104 1.70978 1.72253 2.10398 2.18740 2.29995 2.76195 3.14329 3.51143 4.33406 4.35153 4.35271 4.42389 4.65983 4.70379 4.82839 4.97730 5.12028 5.21205 5.30632 5.59756 5.73633 5.81906 5.97067 6.11450 6.34537 6.56098 6.72331 6.73774 8.19748 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.015222 B = 0.008697 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.992947 B = 3218.681571 C = 4969.751886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.294 6.294 3 C 0.033 3.967 4 C -0.191 4.191 5 C -0.024 4.024 6 C -0.167 4.167 7 C -0.003 4.003 8 C 0.293 3.707 9 N -0.477 5.477 10 C -0.146 4.146 11 C 0.127 3.873 12 C -0.473 4.473 13 H 0.086 0.914 14 C 0.043 3.957 15 N -0.807 5.807 16 Si 0.978 3.022 17 H -0.258 1.258 18 H -0.269 1.269 19 H -0.256 1.256 20 C -0.228 4.228 21 S 0.060 5.940 22 H 0.138 0.862 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.159 0.841 26 H 0.131 0.869 27 H 0.118 0.882 28 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.840 -7.821 1.794 11.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.209 6.209 3 C -0.127 4.127 4 C -0.221 4.221 5 C -0.031 4.031 6 C -0.191 4.191 7 C -0.008 4.008 8 C -0.021 4.021 9 N -0.153 5.153 10 C -0.172 4.172 11 C 0.121 3.879 12 C -0.501 4.501 13 H 0.104 0.896 14 C -0.175 4.175 15 N -0.432 5.432 16 Si 0.798 3.202 17 H -0.182 1.182 18 H -0.194 1.194 19 H -0.180 1.180 20 C -0.344 4.344 21 S 0.318 5.682 22 H 0.156 0.844 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.176 0.824 26 H 0.149 0.851 27 H 0.136 0.864 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.528 -6.894 1.623 10.336 hybrid contribution 0.568 0.404 -0.049 0.699 sum -6.959 -6.490 1.574 9.645 Atomic orbital electron populations 1.23527 0.75990 1.06516 1.02423 1.85930 1.23226 1.22215 1.89516 1.22877 0.95495 0.88920 1.05397 1.20373 0.93439 0.95810 1.12523 1.18604 0.92980 0.90810 1.00706 1.20224 0.94746 0.92053 1.12036 1.15714 0.84408 0.93794 1.06908 1.26069 0.92613 0.91694 0.91695 1.81070 1.12623 1.09988 1.11669 1.21061 0.90429 0.98377 1.07313 1.16988 0.93287 0.88482 0.89117 1.19719 0.97800 0.97069 1.35523 0.89608 1.26716 0.97971 1.01236 0.91607 1.69842 1.28847 1.23595 1.20872 0.85280 0.78619 0.76338 0.79913 1.18205 1.19360 1.18013 1.22771 0.94830 0.97365 1.19421 1.83547 1.08136 0.94507 1.82000 0.84394 0.91894 0.92066 0.82377 0.85094 0.86386 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 10.23 113.37 1.16 1.37 15 2 O -0.29 -8.43 10.56 -90.62 -0.96 -9.39 15 3 C 0.03 1.11 7.11 66.70 0.47 1.59 15 4 C -0.19 -6.83 10.41 23.03 0.24 -6.59 15 5 C -0.02 -0.98 6.02 -20.39 -0.12 -1.11 15 6 C -0.17 -6.71 9.78 23.19 0.23 -6.48 15 7 C 0.00 -0.15 5.71 -21.52 -0.12 -0.27 15 8 C 0.29 12.40 15.29 88.33 1.35 13.75 15 9 N -0.48 -20.53 18.54 19.00 0.35 -20.18 15 10 C -0.15 -7.01 8.36 22.99 0.19 -6.82 15 11 C 0.13 6.18 5.59 -21.15 -0.12 6.06 15 12 C -0.47 -22.64 8.81 23.36 0.21 -22.44 15 13 H 0.09 3.95 7.73 -2.91 -0.02 3.92 15 14 C 0.04 1.94 5.12 85.23 0.44 2.38 15 15 N -0.81 -38.50 10.98 21.82 0.24 -38.26 15 16 Si 0.98 34.52 29.60 68.60 2.03 36.55 15 17 H -0.26 -8.96 7.11 99.48 0.71 -8.25 15 18 H -0.27 -9.14 7.11 99.48 0.71 -8.43 15 19 H -0.26 -8.73 7.11 99.48 0.71 -8.02 15 20 C -0.23 -10.17 6.37 23.59 0.15 -10.02 15 21 S 0.06 2.19 21.42 -56.49 -1.21 0.98 15 22 H 0.14 1.70 8.14 -2.39 -0.02 1.68 15 23 H 0.06 1.20 8.02 -2.39 -0.02 1.18 15 24 H 0.06 1.19 8.01 -2.39 -0.02 1.17 15 25 H 0.16 4.84 8.06 -2.91 -0.02 4.81 15 26 H 0.13 4.53 8.06 -2.91 -0.02 4.50 15 27 H 0.12 5.95 6.16 -2.91 -0.02 5.93 15 28 H 0.29 12.78 8.30 -92.71 -0.77 12.02 15 Total: -1.00 -54.08 273.68 5.73 -48.35 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 1.21 Total: 10.51 kcal Atomic # 6 Polarization: -32.64 SS G_CDS: 4.07 Total: -28.57 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: 0.59 Total: -58.44 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.96 Total: -9.39 kcal Atomic # 14 Polarization: 34.52 SS G_CDS: 2.03 Total: 36.55 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -1.21 Total: 0.98 kcal Total: -54.08 5.73 -48.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396195722.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.928 kcal (2) G-P(sol) polarization free energy of solvation -54.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds