Wall clock time and date at job start Mon Mar 30 2020 06:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35840 * 117.00322 * 2 1 4 4 C 1.37661 * 119.78925 * 0.02562 * 3 2 1 5 5 C 1.39974 * 120.03127 * 179.97438 * 4 3 2 6 6 C 1.43205 * 120.03993 * 179.97438 * 5 4 3 7 7 N 5.83263 * 80.99438 * 0.02562 * 2 1 3 8 8 C 1.39155 * 119.91782 * 0.02562 * 5 4 3 9 9 C 1.39491 * 120.37777 * 359.97438 * 8 5 4 10 10 S 1.75825 * 130.02806 * 180.30895 * 9 8 5 11 11 C 1.69967 * 93.22700 * 180.02562 * 10 9 8 12 12 C 1.36570 * 111.94661 * 359.67467 * 11 10 9 13 13 C 1.40863 * 123.27833 * 180.24938 * 12 11 10 14 14 H 1.07999 * 119.99682 * 156.29677 * 13 12 11 15 15 C 1.39675 * 119.99717 * 336.29102 * 13 12 11 16 16 N 1.31087 * 119.99451 * 161.35195 * 15 13 12 17 17 Si 1.86800 * 120.00265 * 341.34978 * 15 13 12 18 18 H 1.48502 * 109.47038 * 94.05373 * 17 15 13 19 19 H 1.48497 * 109.47005 * 214.05489 * 17 15 13 20 20 H 1.48502 * 109.47120 * 334.05396 * 17 15 13 21 21 C 1.39512 * 119.80216 * 0.02562 * 9 8 5 22 22 H 1.09001 * 109.47512 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.47011 * 299.99870 * 1 2 3 24 24 H 1.09000 * 109.47213 * 59.99574 * 1 2 3 25 25 H 1.07997 * 119.98472 * 0.02562 * 4 3 2 26 26 H 1.07994 * 119.81222 * 179.97438 * 8 5 4 27 27 H 1.08000 * 124.02685 * 179.97438 * 11 10 9 28 28 H 0.97005 * 119.99539 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2918 2.3621 0.0005 5 6 1.9221 3.6119 0.0011 6 6 1.1379 4.8102 0.0011 7 7 0.5160 5.7607 0.0026 8 6 3.3115 3.6886 0.0005 9 6 4.0821 2.5258 0.0000 10 16 5.8290 2.3270 0.0065 11 6 5.7322 0.6301 0.0000 12 6 4.4385 0.1926 0.0002 13 6 4.0834 -1.1705 0.0005 14 1 3.1186 -1.4771 0.3767 15 6 4.9792 -2.1255 -0.4859 16 7 4.8295 -3.3877 -0.1652 17 14 6.3904 -1.6041 -1.5932 18 1 7.6048 -1.3712 -0.7709 19 1 6.6624 -2.6748 -2.5856 20 1 6.0257 -0.3519 -2.3033 21 6 3.4560 1.2791 -0.0005 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 0.2135 2.3014 0.0014 26 1 3.7960 4.6537 0.0005 27 1 6.5914 -0.0243 0.0008 28 1 5.4518 -4.0509 -0.5026 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396195734.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:42 Heat of formation + Delta-G solvation = 11.700725 kcal Electronic energy + Delta-G solvation = -16166.470581 eV Core-core repulsion = 13466.439973 eV Total energy + Delta-G solvation = -2700.030608 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.23538 -38.81571 -37.89171 -36.45524 -34.54585 -31.29352 -30.89050 -28.47097 -27.46188 -25.16772 -23.28609 -21.76629 -20.63059 -18.73553 -18.10086 -17.62889 -16.78939 -16.66562 -16.56999 -16.17416 -15.03260 -14.97108 -14.84140 -14.65580 -14.25714 -14.08929 -13.67978 -13.51060 -13.16464 -12.92863 -12.69994 -12.31444 -12.25747 -12.05772 -11.63554 -11.51861 -11.37562 -11.00365 -9.90015 -9.28446 -8.88556 -8.47040 -6.35191 -0.47124 0.30753 0.92415 1.09364 1.31080 1.40117 1.54470 1.59145 1.75023 2.03123 2.16209 2.53981 2.76981 2.79308 3.22616 3.82194 4.06701 4.18488 4.25137 4.47263 4.48376 4.58941 4.79835 4.84467 5.02184 5.14258 5.17208 5.45272 5.56777 5.71813 6.36809 6.38812 6.50441 6.59393 6.84451 8.17855 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.023033 B = 0.008170 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.377704 B = 3426.422910 C = 4476.203473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.319 6.319 3 C 0.170 3.830 4 C -0.184 4.184 5 C 0.020 3.980 6 C 0.292 3.708 7 N -0.450 5.450 8 C -0.068 4.068 9 C -0.116 4.116 10 S 0.131 5.869 11 C -0.475 4.475 12 C 0.076 3.924 13 C -0.433 4.433 14 H 0.079 0.921 15 C 0.051 3.949 16 N -0.842 5.842 17 Si 0.962 3.038 18 H -0.269 1.269 19 H -0.284 1.284 20 H -0.248 1.248 21 C -0.104 4.104 22 H 0.108 0.892 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.165 0.835 26 H 0.160 0.840 27 H 0.129 0.871 28 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.218 8.280 -1.195 9.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.122 3.878 4 C -0.209 4.209 5 C 0.014 3.986 6 C -0.023 4.023 7 N -0.125 5.125 8 C -0.094 4.094 9 C -0.232 4.232 10 S 0.396 5.604 11 C -0.610 4.610 12 C 0.067 3.933 13 C -0.464 4.464 14 H 0.097 0.903 15 C -0.165 4.165 16 N -0.468 5.468 17 Si 0.787 3.213 18 H -0.195 1.195 19 H -0.211 1.211 20 H -0.172 1.172 21 C -0.115 4.115 22 H 0.126 0.874 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.182 0.818 26 H 0.177 0.823 27 H 0.147 0.853 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.761 10.140 -1.173 10.878 hybrid contribution -0.401 -2.046 -0.283 2.104 sum -4.162 8.093 -1.456 9.217 Atomic orbital electron populations 1.23426 0.76867 1.05314 1.02703 1.86347 1.23070 1.26322 1.87462 1.18662 0.89641 0.85075 0.94464 1.20909 1.00934 0.89151 1.09881 1.15267 0.90603 0.86667 1.06107 1.25333 0.92380 0.92094 0.92461 1.81243 1.09753 1.11245 1.10297 1.20475 0.90892 0.97039 1.01014 1.22525 0.99205 0.95234 1.06250 1.81429 0.98116 1.00781 1.80123 1.23910 0.99452 0.99205 1.38456 1.17616 0.89759 0.92915 0.93042 1.19150 1.02717 0.89498 1.35084 0.90296 1.26726 0.99472 0.94278 0.95989 1.69821 1.36653 1.03335 1.37034 0.85469 0.78123 0.78745 0.78915 1.19509 1.21082 1.17172 1.19163 0.91804 0.93403 1.07143 0.87403 0.90933 0.90885 0.81774 0.82281 0.85324 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 9.80 113.37 1.11 1.37 15 2 O -0.32 -11.89 8.39 -91.76 -0.77 -12.66 15 3 C 0.17 6.17 6.73 22.86 0.15 6.33 15 4 C -0.18 -5.09 8.71 22.55 0.20 -4.90 15 5 C 0.02 0.53 5.73 -21.39 -0.12 0.41 15 6 C 0.29 7.48 15.32 88.33 1.35 8.83 15 7 N -0.45 -12.78 18.54 19.00 0.35 -12.43 15 8 C -0.07 -1.91 9.76 22.79 0.22 -1.69 15 9 C -0.12 -4.20 6.42 22.88 0.15 -4.05 15 10 S 0.13 4.85 22.96 -56.49 -1.30 3.55 15 11 C -0.48 -22.14 8.06 67.43 0.54 -21.59 15 12 C 0.08 3.76 5.32 -20.88 -0.11 3.65 15 13 C -0.43 -23.54 9.19 23.26 0.21 -23.33 15 14 H 0.08 4.57 6.56 -2.91 -0.02 4.55 15 15 C 0.05 2.70 5.46 85.15 0.46 3.16 15 16 N -0.84 -45.47 13.94 21.79 0.30 -45.17 15 17 Si 0.96 43.24 24.56 68.60 1.68 44.92 15 18 H -0.27 -11.73 6.67 99.48 0.66 -11.06 15 19 H -0.28 -12.03 7.11 99.48 0.71 -11.32 15 20 H -0.25 -11.31 6.75 99.48 0.67 -10.64 15 21 C -0.10 -4.39 6.04 -20.10 -0.12 -4.51 15 22 H 0.11 2.29 8.14 -2.39 -0.02 2.27 15 23 H 0.07 1.40 7.64 -2.38 -0.02 1.38 15 24 H 0.07 1.40 7.64 -2.39 -0.02 1.39 15 25 H 0.16 3.44 6.23 -2.91 -0.02 3.42 15 26 H 0.16 3.48 8.06 -2.91 -0.02 3.46 15 27 H 0.13 6.17 4.43 -2.91 -0.01 6.16 15 28 H 0.29 14.29 8.30 -92.70 -0.77 13.52 15 Total: -1.00 -60.44 262.45 5.47 -54.97 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: 1.14 Total: 3.11 kcal Atomic # 6 Polarization: -40.35 SS G_CDS: 4.05 Total: -36.30 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.66 Total: -57.60 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -0.77 Total: -12.66 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.68 Total: 44.92 kcal Atomic # 16 Polarization: 4.85 SS G_CDS: -1.30 Total: 3.55 kcal Total: -60.44 5.47 -54.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396195734.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.668 kcal (2) G-P(sol) polarization free energy of solvation -60.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds