Wall clock time and date at job start Mon Mar 30 2020 06:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35758 * 116.99785 * 2 1 4 4 C 1.36133 * 119.71789 * 359.97438 * 3 2 1 5 5 C 1.40192 * 120.41601 * 180.02562 * 4 3 2 6 6 C 1.43199 * 120.02457 * 180.02562 * 5 4 3 7 7 N 5.81693 * 80.76385 * 359.97438 * 2 1 3 8 8 C 1.39378 * 119.96065 * 359.97438 * 5 4 3 9 9 C 1.39112 * 120.30907 * 359.97438 * 8 5 4 10 10 S 1.76029 * 130.09303 * 180.02562 * 9 8 5 11 11 C 1.75458 * 91.75087 * 179.51918 * 10 9 8 12 12 C 1.39749 * 124.85070 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99960 * 180.49614 * 12 11 10 14 14 C 1.40246 * 120.00046 * 0.49894 * 12 11 10 15 15 N 1.30719 * 119.99751 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00306 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46746 * 59.99779 * 16 14 12 18 18 H 1.48495 * 109.47156 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47020 * 300.00071 * 16 14 12 20 20 C 1.37209 * 110.30045 * 0.39480 * 11 10 9 21 21 C 1.39351 * 115.09549 * 359.56438 * 20 11 10 22 22 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47187 * 300.00259 * 1 2 3 24 24 H 1.09001 * 109.46558 * 60.00306 * 1 2 3 25 25 H 1.08002 * 119.79435 * 0.02562 * 4 3 2 26 26 H 1.08002 * 119.84379 * 180.02562 * 8 5 4 27 27 H 0.97001 * 120.00273 * 179.97438 * 15 14 12 28 28 H 1.08000 * 122.45230 * 179.54765 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.2982 2.3476 -0.0005 5 6 1.9194 3.6044 -0.0011 6 6 1.1254 4.7961 -0.0011 7 7 0.4954 5.7415 -0.0026 8 6 3.3103 3.6934 -0.0005 9 6 4.0876 2.5397 0.0011 10 16 5.8379 2.3520 0.0027 11 6 5.7041 0.6026 0.0188 12 6 6.7867 -0.2811 0.0263 13 1 6.6136 -1.3472 0.0280 14 6 8.0980 0.2164 0.0316 15 7 8.3074 1.5067 0.0291 16 14 9.5452 -0.9647 0.0424 17 1 9.4921 -1.8234 -1.1680 18 1 10.8139 -0.1930 0.0461 19 1 9.4797 -1.8165 1.2570 20 6 4.3847 0.2260 0.0134 21 6 3.4700 1.2772 0.0066 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 0.2202 2.2819 -0.0005 26 1 3.7869 4.6626 -0.0005 27 1 9.2143 1.8509 0.0331 28 1 4.0776 -0.8094 0.0142 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396196480.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:45 Heat of formation + Delta-G solvation = 5.957497 kcal Electronic energy + Delta-G solvation = -15730.662597 eV Core-core repulsion = 13030.382945 eV Total energy + Delta-G solvation = -2700.279653 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.43869 -37.07154 -36.02020 -34.96698 -33.25230 -29.53686 -29.38205 -27.04373 -25.96694 -22.85216 -21.68249 -19.71766 -18.96692 -17.83909 -16.05907 -15.72343 -15.34747 -15.18615 -14.95620 -14.40899 -13.50863 -13.30438 -13.10309 -12.92552 -12.37684 -12.37122 -12.08136 -11.73762 -11.63549 -11.59715 -11.19346 -10.93159 -10.77618 -10.44727 -10.25288 -10.23123 -9.48366 -9.31403 -8.26660 -7.53879 -7.41545 -6.53462 -4.84175 1.45261 2.22369 2.61861 2.74000 2.78870 2.99992 3.12888 3.30370 3.41253 3.58226 3.82109 4.02106 4.49490 4.70866 4.86975 5.41251 5.48055 5.51798 5.73091 5.77324 6.13047 6.36815 6.44172 6.65623 6.73907 7.05704 7.11591 7.25815 7.37373 7.51629 7.68769 8.00360 8.10101 8.13305 8.26459 9.41374 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.028737 B = 0.005983 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.125206 B = 4678.625069 C = 5637.574912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.314 6.314 3 C 0.089 3.911 4 C -0.159 4.159 5 C -0.110 4.110 6 C 0.285 3.715 7 N -0.479 5.479 8 C -0.005 4.005 9 C -0.269 4.269 10 S 0.163 5.837 11 C 0.049 3.951 12 C -0.361 4.361 13 H 0.104 0.896 14 C 0.050 3.950 15 N -0.764 5.764 16 Si 0.942 3.058 17 H -0.257 1.257 18 H -0.271 1.271 19 H -0.257 1.257 20 C -0.336 4.336 21 C 0.035 3.965 22 H 0.090 0.910 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.116 0.884 26 H 0.113 0.887 27 H 0.307 0.693 28 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.980 -3.471 -0.007 3.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.228 6.228 3 C 0.043 3.957 4 C -0.182 4.182 5 C -0.117 4.117 6 C -0.027 4.027 7 N -0.157 5.157 8 C -0.030 4.030 9 C -0.384 4.384 10 S 0.424 5.576 11 C -0.072 4.072 12 C -0.395 4.395 13 H 0.122 0.878 14 C -0.173 4.173 15 N -0.390 5.390 16 Si 0.765 3.235 17 H -0.181 1.181 18 H -0.195 1.195 19 H -0.181 1.181 20 C -0.360 4.360 21 C 0.025 3.975 22 H 0.109 0.891 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.134 0.866 26 H 0.131 0.869 27 H 0.120 0.880 28 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.491 -1.035 -0.018 1.146 hybrid contribution -0.709 -1.632 0.017 1.780 sum -1.200 -2.668 -0.001 2.925 Atomic orbital electron populations 1.22903 0.80180 1.02817 1.00709 1.86027 1.19660 1.27536 1.89559 1.18356 0.90551 0.83307 1.03437 1.20056 0.98377 0.90834 1.08960 1.15011 0.90646 0.86360 1.19654 1.25879 0.92507 0.92590 0.91768 1.81125 1.09943 1.11211 1.13402 1.20071 0.90593 0.96389 0.95943 1.23274 1.02801 0.94712 1.17568 1.84903 0.92514 1.02525 1.77673 1.21550 0.95526 0.95568 0.94533 1.19451 0.88876 0.95766 1.35427 0.87795 1.26423 1.02122 0.96429 0.92376 1.68558 1.26080 1.13666 1.30678 0.85725 0.77366 0.79732 0.80721 1.18105 1.19529 1.18105 1.19628 0.90301 0.97692 1.28376 1.17455 0.89343 0.93068 0.97635 0.89136 0.93356 0.93365 0.86625 0.86932 0.87977 0.86676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.80 101.05 0.99 1.38 15 2 O -0.31 -5.90 10.34 -18.98 -0.20 -6.10 15 3 C 0.09 1.83 6.74 -38.64 -0.26 1.57 15 4 C -0.16 -2.96 8.65 -39.60 -0.34 -3.30 15 5 C -0.11 -2.10 5.74 -106.81 -0.61 -2.72 15 6 C 0.28 5.36 15.32 -22.47 -0.34 5.02 15 7 N -0.48 -9.45 18.54 41.84 0.78 -8.67 15 8 C 0.00 -0.10 9.76 -38.83 -0.38 -0.48 15 9 C -0.27 -5.92 6.45 -38.39 -0.25 -6.17 15 10 S 0.16 3.64 20.13 -107.50 -2.16 1.48 15 11 C 0.05 1.15 6.12 -39.39 -0.24 0.91 15 12 C -0.36 -8.09 9.26 -38.26 -0.35 -8.44 15 13 H 0.10 2.17 7.85 -52.48 -0.41 1.76 15 14 C 0.05 1.02 5.50 -17.27 -0.09 0.93 15 15 N -0.76 -16.15 10.58 55.56 0.59 -15.57 15 16 Si 0.94 15.30 29.56 -169.99 -5.03 10.27 15 17 H -0.26 -4.15 7.11 56.52 0.40 -3.75 15 18 H -0.27 -4.27 7.11 56.52 0.40 -3.87 15 19 H -0.26 -4.15 7.11 56.52 0.40 -3.75 15 20 C -0.34 -7.94 9.95 -39.54 -0.39 -8.33 15 21 C 0.03 0.79 5.86 -106.92 -0.63 0.16 15 22 H 0.09 0.96 8.14 -51.93 -0.42 0.54 15 23 H 0.05 0.59 7.63 -51.93 -0.40 0.20 15 24 H 0.05 0.59 7.63 -51.93 -0.40 0.20 15 25 H 0.12 1.85 6.15 -52.49 -0.32 1.53 15 26 H 0.11 2.01 8.06 -52.49 -0.42 1.58 15 27 H 0.31 5.77 8.29 -40.82 -0.34 5.43 15 28 H 0.12 2.67 8.06 -52.49 -0.42 2.24 15 LS Contribution 271.43 15.07 4.09 4.09 Total: -1.00 -25.09 271.43 -6.77 -31.86 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -1.93 Total: 2.10 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -2.91 Total: -19.46 kcal Atomic # 7 Polarization: -25.60 SS G_CDS: 1.36 Total: -24.24 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -0.20 Total: -6.10 kcal Atomic # 14 Polarization: 15.30 SS G_CDS: -5.03 Total: 10.27 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -2.16 Total: 1.48 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -25.09 -6.77 -31.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396196480.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.818 kcal (2) G-P(sol) polarization free energy of solvation -25.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds