Wall clock time and date at job start Mon Mar 30 2020 06:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35758 * 116.99785 * 2 1 4 4 C 1.36133 * 119.71789 * 359.97438 * 3 2 1 5 5 C 1.40192 * 120.41601 * 180.02562 * 4 3 2 6 6 C 1.43199 * 120.02457 * 180.02562 * 5 4 3 7 7 N 5.81693 * 80.76385 * 359.97438 * 2 1 3 8 8 C 1.39378 * 119.96065 * 359.97438 * 5 4 3 9 9 C 1.39112 * 120.30907 * 359.97438 * 8 5 4 10 10 S 1.76029 * 130.09303 * 180.02562 * 9 8 5 11 11 C 1.75458 * 91.75087 * 179.51918 * 10 9 8 12 12 C 1.39749 * 124.85070 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99960 * 180.49614 * 12 11 10 14 14 C 1.40246 * 120.00046 * 0.49894 * 12 11 10 15 15 N 1.30719 * 119.99751 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00306 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46746 * 59.99779 * 16 14 12 18 18 H 1.48495 * 109.47156 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47020 * 300.00071 * 16 14 12 20 20 C 1.37209 * 110.30045 * 0.39480 * 11 10 9 21 21 C 1.39351 * 115.09549 * 359.56438 * 20 11 10 22 22 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47187 * 300.00259 * 1 2 3 24 24 H 1.09001 * 109.46558 * 60.00306 * 1 2 3 25 25 H 1.08002 * 119.79435 * 0.02562 * 4 3 2 26 26 H 1.08002 * 119.84379 * 180.02562 * 8 5 4 27 27 H 0.97001 * 120.00273 * 179.97438 * 15 14 12 28 28 H 1.08000 * 122.45230 * 179.54765 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.2982 2.3476 -0.0005 5 6 1.9194 3.6044 -0.0011 6 6 1.1254 4.7961 -0.0011 7 7 0.4954 5.7415 -0.0026 8 6 3.3103 3.6934 -0.0005 9 6 4.0876 2.5397 0.0011 10 16 5.8379 2.3520 0.0027 11 6 5.7041 0.6026 0.0188 12 6 6.7867 -0.2811 0.0263 13 1 6.6136 -1.3472 0.0280 14 6 8.0980 0.2164 0.0316 15 7 8.3074 1.5067 0.0291 16 14 9.5452 -0.9647 0.0424 17 1 9.4921 -1.8234 -1.1680 18 1 10.8139 -0.1930 0.0461 19 1 9.4797 -1.8165 1.2570 20 6 4.3847 0.2260 0.0134 21 6 3.4700 1.2772 0.0066 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 0.2202 2.2819 -0.0005 26 1 3.7869 4.6626 -0.0005 27 1 9.2143 1.8509 0.0331 28 1 4.0776 -0.8094 0.0142 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396196480.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:45 Heat of formation + Delta-G solvation = -5.846436 kcal Electronic energy + Delta-G solvation = -15731.174454 eV Core-core repulsion = 13030.382945 eV Total energy + Delta-G solvation = -2700.791510 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.94764 -38.56267 -37.62095 -36.56726 -34.86523 -31.16376 -30.90504 -28.29136 -27.56043 -24.44794 -23.25495 -21.35552 -20.48573 -19.49667 -17.51822 -17.23776 -16.91803 -16.49123 -16.48567 -15.93360 -14.92195 -14.83423 -14.67510 -14.43470 -13.96764 -13.83760 -13.61254 -13.19612 -13.13430 -13.11397 -12.64752 -12.25626 -12.07847 -11.95387 -11.81205 -11.70569 -11.05040 -11.04240 -9.85974 -9.20682 -8.97823 -8.20866 -6.54037 -0.15400 0.63884 1.15045 1.32098 1.40140 1.55940 1.68450 1.74332 1.83318 2.13910 2.24426 2.67315 2.88311 3.12814 3.22035 4.06149 4.21057 4.39127 4.48322 4.60928 4.77364 4.79707 4.86442 5.03715 5.15227 5.40523 5.48657 5.60086 5.80997 5.82870 6.02642 6.32106 6.47269 6.58271 6.76544 7.88748 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.028737 B = 0.005983 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.125206 B = 4678.625069 C = 5637.574912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.084 3.916 4 C -0.151 4.151 5 C -0.097 4.097 6 C 0.299 3.701 7 N -0.486 5.486 8 C -0.011 4.011 9 C -0.281 4.281 10 S 0.154 5.846 11 C 0.023 3.977 12 C -0.388 4.388 13 H 0.108 0.892 14 C 0.018 3.982 15 N -0.785 5.785 16 Si 1.013 2.987 17 H -0.255 1.255 18 H -0.259 1.259 19 H -0.255 1.255 20 C -0.366 4.366 21 C 0.011 3.989 22 H 0.117 0.883 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.147 0.853 26 H 0.131 0.869 27 H 0.317 0.683 28 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.461 -3.368 -0.004 3.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.038 3.962 4 C -0.174 4.174 5 C -0.103 4.103 6 C -0.013 4.013 7 N -0.163 5.163 8 C -0.036 4.036 9 C -0.395 4.395 10 S 0.414 5.586 11 C -0.097 4.097 12 C -0.421 4.421 13 H 0.126 0.874 14 C -0.203 4.203 15 N -0.411 5.411 16 Si 0.830 3.170 17 H -0.178 1.178 18 H -0.183 1.183 19 H -0.178 1.178 20 C -0.390 4.390 21 C 0.002 3.998 22 H 0.136 0.864 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.165 0.835 26 H 0.149 0.851 27 H 0.131 0.869 28 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.005 -0.920 -0.016 1.362 hybrid contribution -0.730 -1.606 0.016 1.764 sum -1.735 -2.525 0.000 3.064 Atomic orbital electron populations 1.23287 0.77225 1.05180 1.01884 1.86004 1.22708 1.26896 1.89385 1.18397 0.89982 0.84590 1.03263 1.20325 0.99859 0.89851 1.07401 1.15079 0.90382 0.86748 1.18119 1.25616 0.92097 0.92171 0.91404 1.81158 1.10355 1.11396 1.13425 1.20266 0.90963 0.96550 0.95835 1.23410 1.02657 0.95296 1.18163 1.84655 0.93447 1.02074 1.78393 1.21848 0.96067 0.96464 0.95334 1.19795 0.89862 0.96054 1.36431 0.87384 1.27314 1.03867 0.97970 0.91145 1.68567 1.27377 1.15028 1.30119 0.84719 0.74100 0.77501 0.80635 1.17842 1.18295 1.17840 1.19652 0.90880 0.97600 1.30837 1.17734 0.90807 0.93111 0.98196 0.86445 0.92060 0.92060 0.83539 0.85093 0.86851 0.87678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.80 113.37 1.11 1.56 15 2 O -0.34 -12.34 10.34 -90.84 -0.94 -13.28 15 3 C 0.08 3.39 6.74 22.88 0.15 3.54 15 4 C -0.15 -5.31 8.65 22.25 0.19 -5.12 15 5 C -0.10 -3.50 5.74 -21.28 -0.12 -3.62 15 6 C 0.30 10.49 15.32 88.33 1.35 11.84 15 7 N -0.49 -17.89 18.54 19.00 0.35 -17.54 15 8 C -0.01 -0.43 9.76 22.75 0.22 -0.21 15 9 C -0.28 -12.49 6.45 23.04 0.15 -12.34 15 10 S 0.15 7.06 20.13 -56.49 -1.14 5.92 15 11 C 0.02 1.13 6.12 22.39 0.14 1.27 15 12 C -0.39 -17.89 9.26 23.12 0.21 -17.68 15 13 H 0.11 4.69 7.85 -2.91 -0.02 4.66 15 14 C 0.02 0.74 5.50 85.35 0.47 1.21 15 15 N -0.79 -33.34 10.58 21.88 0.23 -33.10 15 16 Si 1.01 30.57 29.56 68.60 2.03 32.59 15 17 H -0.25 -7.54 7.11 99.48 0.71 -6.84 15 18 H -0.26 -7.28 7.11 99.48 0.71 -6.57 15 19 H -0.25 -7.54 7.11 99.48 0.71 -6.84 15 20 C -0.37 -18.08 9.95 22.30 0.22 -17.85 15 21 C 0.01 0.50 5.86 -21.35 -0.13 0.38 15 22 H 0.12 2.17 8.14 -2.39 -0.02 2.15 15 23 H 0.06 1.32 7.63 -2.39 -0.02 1.30 15 24 H 0.06 1.32 7.63 -2.39 -0.02 1.30 15 25 H 0.15 4.17 6.15 -2.91 -0.02 4.16 15 26 H 0.13 4.49 8.06 -2.91 -0.02 4.47 15 27 H 0.32 11.79 8.29 -92.71 -0.77 11.03 15 28 H 0.11 5.18 8.06 -2.91 -0.02 5.15 15 Total: -1.00 -54.17 271.43 5.72 -48.45 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 1.21 Total: 13.97 kcal Atomic # 6 Polarization: -41.00 SS G_CDS: 3.98 Total: -37.02 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: 0.58 Total: -50.64 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.94 Total: -13.28 kcal Atomic # 14 Polarization: 30.57 SS G_CDS: 2.03 Total: 32.59 kcal Atomic # 16 Polarization: 7.06 SS G_CDS: -1.14 Total: 5.92 kcal Total: -54.17 5.72 -48.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396196480.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.599 kcal (2) G-P(sol) polarization free energy of solvation -54.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds