Wall clock time and date at job start Mon Mar 30 2020 06:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36139 * 116.99927 * 2 1 4 4 C 1.33208 * 122.11902 * 359.71435 * 3 2 1 5 5 S 1.75477 * 110.73757 * 179.89515 * 4 3 2 6 6 C 1.76083 * 91.58309 * 0.30582 * 5 4 3 7 7 C 1.38738 * 130.38476 * 179.85263 * 6 5 4 8 8 C 1.40293 * 121.01916 * 179.97438 * 7 6 5 9 9 C 1.41060 * 119.79989 * 180.02562 * 8 7 6 10 10 H 1.08007 * 119.99915 * 329.95089 * 9 8 7 11 11 C 1.39800 * 120.00247 * 149.93872 * 9 8 7 12 12 N 1.30925 * 119.99747 * 161.69160 * 11 9 8 13 13 Si 1.86799 * 119.99875 * 341.69868 * 11 9 8 14 14 H 1.48494 * 109.47265 * 95.41954 * 13 11 9 15 15 H 1.48501 * 109.46949 * 215.41807 * 13 11 9 16 16 H 1.48500 * 109.46879 * 335.41658 * 13 11 9 17 17 C 1.40806 * 120.40519 * 0.04151 * 8 7 6 18 18 C 1.37942 * 120.03912 * 359.96056 * 17 8 7 19 19 C 1.43207 * 120.12084 * 180.02562 * 18 17 8 20 20 N 3.20569 * 136.83625 * 179.97438 * 2 1 3 21 21 C 1.40122 * 122.11940 * 179.97438 * 3 2 1 22 22 H 1.08995 * 109.46933 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47046 * 300.00372 * 1 2 3 24 24 H 1.09003 * 109.46842 * 60.00018 * 1 2 3 25 25 H 1.08003 * 124.62643 * 0.02562 * 4 3 2 26 26 H 1.07997 * 119.49160 * 359.97438 * 7 6 5 27 27 H 0.97006 * 119.99606 * 179.97438 * 12 11 9 28 28 H 1.07993 * 119.97641 * 179.97438 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0471 1.2130 0.0000 4 6 1.3634 2.3562 -0.0056 5 16 2.4529 3.7318 -0.0009 6 6 3.8629 2.6771 -0.0004 7 6 5.2157 2.9849 0.0000 8 6 6.1874 1.9730 0.0008 9 6 7.5559 2.3151 0.0017 10 1 7.8837 3.2315 -0.4666 11 6 8.4878 1.4683 0.6090 12 7 9.7592 1.5766 0.3160 13 14 7.9189 0.1820 1.8384 14 1 7.7329 -1.1177 1.1447 15 1 8.9403 0.0317 2.9058 16 1 6.6313 0.6097 2.4421 17 6 5.8050 0.6178 0.0005 18 6 4.4682 0.2775 0.0001 19 6 4.0773 -1.1002 0.0003 20 7 3.7673 -2.1930 0.0010 21 6 3.4427 1.3381 0.0005 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2857 2.4268 -0.0102 26 1 5.5256 4.0195 -0.0005 27 1 10.4058 0.9892 0.7376 28 1 6.5588 -0.1555 0.0008 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396196542.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:22 Heat of formation + Delta-G solvation = 28.059415 kcal Electronic energy + Delta-G solvation = -16145.602032 eV Core-core repulsion = 13446.280790 eV Total energy + Delta-G solvation = -2699.321242 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.49792 -37.84175 -35.80779 -34.61478 -32.93665 -30.57067 -29.30295 -27.50658 -25.27112 -23.00790 -22.33383 -20.06956 -18.92492 -17.27548 -16.56078 -16.25090 -15.53026 -15.44726 -14.95622 -14.35289 -13.90715 -13.42245 -13.16498 -12.96262 -12.47428 -12.39278 -12.25803 -12.06721 -11.72483 -11.50646 -11.23866 -11.04357 -10.80919 -10.55979 -10.34473 -9.99496 -9.83884 -9.40392 -8.54024 -7.79954 -7.41369 -6.90319 -4.84439 1.13637 1.93418 2.28314 2.67782 2.76621 2.93776 3.00472 3.11079 3.31476 3.59199 3.64132 3.77363 4.23707 4.60927 4.95264 5.23747 5.26274 5.31884 5.57053 5.79456 6.00390 6.11794 6.23689 6.38338 6.50214 6.75184 6.83930 7.06709 7.25453 7.46574 7.72401 7.83676 8.07771 8.11524 8.27429 9.57620 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.023612 B = 0.008052 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.543559 B = 3476.383037 C = 4450.975258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.310 6.310 3 C 0.170 3.830 4 C -0.371 4.371 5 S 0.047 5.953 6 C -0.040 4.040 7 C -0.189 4.189 8 C 0.102 3.898 9 C -0.403 4.403 10 H 0.106 0.894 11 C 0.081 3.919 12 N -0.773 5.773 13 Si 0.896 3.104 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.235 1.235 17 C -0.145 4.145 18 C 0.049 3.951 19 C 0.273 3.727 20 N -0.442 5.442 21 C -0.189 4.189 22 H 0.091 0.909 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.152 0.848 26 H 0.116 0.884 27 H 0.295 0.705 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.420 1.412 1.009 8.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.224 6.224 3 C 0.115 3.885 4 C -0.504 4.504 5 S 0.306 5.694 6 C -0.155 4.155 7 C -0.216 4.216 8 C 0.095 3.905 9 C -0.430 4.430 10 H 0.124 0.876 11 C -0.143 4.143 12 N -0.394 5.394 13 Si 0.720 3.280 14 H -0.188 1.188 15 H -0.203 1.203 16 H -0.158 1.158 17 C -0.167 4.167 18 C 0.044 3.956 19 C -0.041 4.041 20 N -0.118 5.118 21 C -0.197 4.197 22 H 0.110 0.890 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.170 0.830 26 H 0.134 0.866 27 H 0.106 0.894 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.855 0.990 1.015 8.968 hybrid contribution -0.096 -1.492 0.457 1.564 sum -8.952 -0.503 1.471 9.086 Atomic orbital electron populations 1.22918 0.79267 1.03033 1.00998 1.86116 1.20527 1.26700 1.89012 1.17496 0.90586 0.83921 0.96517 1.24258 1.02312 0.94986 1.28862 1.83584 0.95006 1.08090 1.82757 1.21904 0.97254 0.93781 1.02545 1.20166 0.88249 0.98758 1.14419 1.17316 0.93625 0.89685 0.89881 1.19666 0.88938 1.06835 1.27533 0.87620 1.26300 0.94472 0.96999 0.96574 1.69694 1.03075 1.33305 1.33297 0.86519 0.81053 0.80199 0.80206 1.18756 1.20343 1.15784 1.21236 0.92699 0.97410 1.05359 1.16509 0.92525 0.83032 1.03575 1.25827 0.92390 0.92808 0.93095 1.81028 1.08694 1.12403 1.09646 1.17433 0.88383 0.91793 1.22090 0.89037 0.93057 0.93047 0.83033 0.86600 0.89395 0.86202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.91 101.05 1.00 1.44 15 2 O -0.31 -5.71 9.16 -20.18 -0.18 -5.89 15 3 C 0.17 3.29 6.63 -40.63 -0.27 3.02 15 4 C -0.37 -6.39 9.98 28.98 0.29 -6.10 15 5 S 0.05 0.82 23.29 -107.50 -2.50 -1.69 15 6 C -0.04 -0.80 6.45 -38.61 -0.25 -1.05 15 7 C -0.19 -3.91 9.72 -38.62 -0.38 -4.28 15 8 C 0.10 2.23 5.08 -107.08 -0.54 1.69 15 9 C -0.40 -9.17 9.52 -37.93 -0.36 -9.54 15 10 H 0.11 2.47 8.06 -52.48 -0.42 2.05 15 11 C 0.08 1.81 5.39 -17.35 -0.09 1.71 15 12 N -0.77 -17.70 13.93 55.54 0.77 -16.93 15 13 Si 0.90 18.04 24.50 -169.99 -4.17 13.88 15 14 H -0.26 -5.23 6.70 56.52 0.38 -4.85 15 15 H -0.28 -5.36 7.11 56.52 0.40 -4.96 15 16 H -0.24 -4.86 6.87 56.52 0.39 -4.47 15 17 C -0.14 -3.13 6.78 -38.72 -0.26 -3.39 15 18 C 0.05 1.06 5.92 -104.29 -0.62 0.44 15 19 C 0.27 5.86 13.97 -22.47 -0.31 5.54 15 20 N -0.44 -9.57 18.54 41.84 0.78 -8.80 15 21 C -0.19 -3.99 6.03 -104.61 -0.63 -4.63 15 22 H 0.09 1.01 8.14 -51.93 -0.42 0.59 15 23 H 0.05 0.60 7.83 -51.93 -0.41 0.19 15 24 H 0.05 0.60 7.81 -51.93 -0.41 0.19 15 25 H 0.15 2.20 6.89 -52.48 -0.36 1.84 15 26 H 0.12 2.22 8.06 -52.49 -0.42 1.80 15 27 H 0.30 6.08 8.30 -40.82 -0.34 5.74 15 28 H 0.12 2.54 4.71 -52.49 -0.25 2.29 15 LS Contribution 265.30 15.07 4.00 4.00 Total: -1.00 -24.56 265.30 -5.59 -30.16 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -1.86 Total: 0.42 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -2.43 Total: -15.15 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 1.55 Total: -25.73 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.18 Total: -5.89 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -4.17 Total: 13.88 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.50 Total: -1.69 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -24.56 -5.59 -30.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396196542.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.218 kcal (2) G-P(sol) polarization free energy of solvation -24.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds