Wall clock time and date at job start Mon Mar 30 2020 06:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36139 * 116.99927 * 2 1 4 4 C 1.33208 * 122.11902 * 359.71435 * 3 2 1 5 5 S 1.75477 * 110.73757 * 179.89515 * 4 3 2 6 6 C 1.76083 * 91.58309 * 0.30582 * 5 4 3 7 7 C 1.38738 * 130.38476 * 179.85263 * 6 5 4 8 8 C 1.40293 * 121.01916 * 179.97438 * 7 6 5 9 9 C 1.41060 * 119.79989 * 180.02562 * 8 7 6 10 10 H 1.08007 * 119.99915 * 329.95089 * 9 8 7 11 11 C 1.39800 * 120.00247 * 149.93872 * 9 8 7 12 12 N 1.30925 * 119.99747 * 161.69160 * 11 9 8 13 13 Si 1.86799 * 119.99875 * 341.69868 * 11 9 8 14 14 H 1.48494 * 109.47265 * 95.41954 * 13 11 9 15 15 H 1.48501 * 109.46949 * 215.41807 * 13 11 9 16 16 H 1.48500 * 109.46879 * 335.41658 * 13 11 9 17 17 C 1.40806 * 120.40519 * 0.04151 * 8 7 6 18 18 C 1.37942 * 120.03912 * 359.96056 * 17 8 7 19 19 C 1.43207 * 120.12084 * 180.02562 * 18 17 8 20 20 N 3.20569 * 136.83625 * 179.97438 * 2 1 3 21 21 C 1.40122 * 122.11940 * 179.97438 * 3 2 1 22 22 H 1.08995 * 109.46933 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47046 * 300.00372 * 1 2 3 24 24 H 1.09003 * 109.46842 * 60.00018 * 1 2 3 25 25 H 1.08003 * 124.62643 * 0.02562 * 4 3 2 26 26 H 1.07997 * 119.49160 * 359.97438 * 7 6 5 27 27 H 0.97006 * 119.99606 * 179.97438 * 12 11 9 28 28 H 1.07993 * 119.97641 * 179.97438 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0471 1.2130 0.0000 4 6 1.3634 2.3562 -0.0056 5 16 2.4529 3.7318 -0.0009 6 6 3.8629 2.6771 -0.0004 7 6 5.2157 2.9849 0.0000 8 6 6.1874 1.9730 0.0008 9 6 7.5559 2.3151 0.0017 10 1 7.8837 3.2315 -0.4666 11 6 8.4878 1.4683 0.6090 12 7 9.7592 1.5766 0.3160 13 14 7.9189 0.1820 1.8384 14 1 7.7329 -1.1177 1.1447 15 1 8.9403 0.0317 2.9058 16 1 6.6313 0.6097 2.4421 17 6 5.8050 0.6178 0.0005 18 6 4.4682 0.2775 0.0001 19 6 4.0773 -1.1002 0.0003 20 7 3.7673 -2.1930 0.0010 21 6 3.4427 1.3381 0.0005 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2857 2.4268 -0.0102 26 1 5.5256 4.0195 -0.0005 27 1 10.4058 0.9892 0.7376 28 1 6.5588 -0.1555 0.0008 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396196542.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:22 Heat of formation + Delta-G solvation = 15.421244 kcal Electronic energy + Delta-G solvation = -16146.150064 eV Core-core repulsion = 13446.280790 eV Total energy + Delta-G solvation = -2699.869274 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.95460 -39.35308 -37.49713 -36.18968 -34.52284 -32.22481 -30.87216 -28.63705 -26.84207 -24.64860 -23.89544 -21.53306 -20.53667 -18.87798 -18.06240 -17.69344 -17.15556 -16.68737 -16.47942 -15.95979 -15.33508 -15.03236 -14.76478 -14.53887 -14.08558 -13.92612 -13.85380 -13.55461 -13.25582 -12.86985 -12.80692 -12.44930 -12.24732 -12.14525 -11.87906 -11.56867 -11.37329 -11.00994 -10.11481 -9.38860 -9.06759 -8.36546 -6.54338 -0.46915 0.27907 0.78178 1.17039 1.20642 1.30792 1.41898 1.54183 1.63674 1.92587 2.01804 2.52572 2.56368 2.93616 3.26866 3.73128 4.22999 4.28404 4.39302 4.42833 4.55599 4.68544 4.72567 4.83218 4.90172 5.14326 5.22104 5.47951 5.59686 5.81719 6.11686 6.37966 6.40679 6.46100 6.59649 7.98518 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.023612 B = 0.008052 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.543559 B = 3476.383037 C = 4450.975258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.334 6.334 3 C 0.142 3.858 4 C -0.345 4.345 5 S 0.102 5.898 6 C -0.067 4.067 7 C -0.184 4.184 8 C 0.095 3.905 9 C -0.436 4.436 10 H 0.087 0.913 11 C 0.061 3.939 12 N -0.811 5.811 13 Si 0.930 3.070 14 H -0.261 1.261 15 H -0.264 1.264 16 H -0.245 1.245 17 C -0.150 4.150 18 C 0.035 3.965 19 C 0.279 3.721 20 N -0.449 5.449 21 C -0.186 4.186 22 H 0.108 0.892 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.187 0.813 26 H 0.127 0.873 27 H 0.302 0.698 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.402 1.754 1.340 11.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.248 6.248 3 C 0.087 3.913 4 C -0.478 4.478 5 S 0.362 5.638 6 C -0.182 4.182 7 C -0.211 4.211 8 C 0.089 3.911 9 C -0.464 4.464 10 H 0.105 0.895 11 C -0.159 4.159 12 N -0.434 5.434 13 Si 0.753 3.247 14 H -0.187 1.187 15 H -0.189 1.189 16 H -0.168 1.168 17 C -0.172 4.172 18 C 0.030 3.970 19 C -0.035 4.035 20 N -0.125 5.125 21 C -0.195 4.195 22 H 0.126 0.874 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.204 0.796 26 H 0.145 0.855 27 H 0.113 0.887 28 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.840 1.344 1.345 11.992 hybrid contribution 0.394 -1.505 0.305 1.586 sum -11.446 -0.161 1.651 11.566 Atomic orbital electron populations 1.23262 0.76557 1.04838 1.02457 1.86085 1.23341 1.26285 1.89123 1.17493 0.90085 0.85187 0.98578 1.24800 1.04104 0.94263 1.24668 1.83484 0.92566 1.06547 1.81243 1.22215 0.98336 0.94796 1.02867 1.20356 0.88583 0.99129 1.13049 1.17373 0.93568 0.90170 0.90033 1.19550 0.89734 1.07017 1.30137 0.89547 1.26658 0.94387 0.97821 0.97082 1.69701 1.03739 1.34963 1.34986 0.85998 0.80508 0.78858 0.79313 1.18668 1.18945 1.16795 1.21250 0.92936 0.97369 1.05681 1.16596 0.92672 0.83330 1.04431 1.25805 0.92145 0.92735 0.92854 1.81015 1.09015 1.12461 1.10031 1.17864 0.89664 0.91963 1.19985 0.87351 0.91496 0.91468 0.79607 0.85495 0.88653 0.86281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.91 113.37 1.12 1.64 15 2 O -0.33 -11.35 9.16 -95.13 -0.87 -12.22 15 3 C 0.14 5.06 6.63 21.59 0.14 5.21 15 4 C -0.34 -10.31 9.98 66.69 0.67 -9.64 15 5 S 0.10 3.15 23.29 -56.49 -1.32 1.83 15 6 C -0.07 -2.59 6.45 22.90 0.15 -2.44 15 7 C -0.18 -7.54 9.72 22.89 0.22 -7.32 15 8 C 0.09 4.22 5.08 -21.46 -0.11 4.12 15 9 C -0.44 -20.67 9.52 23.34 0.22 -20.44 15 10 H 0.09 4.29 8.06 -2.91 -0.02 4.26 15 11 C 0.06 2.82 5.39 85.21 0.46 3.28 15 12 N -0.81 -38.46 13.93 21.80 0.30 -38.16 15 13 Si 0.93 37.44 24.50 68.60 1.68 39.12 15 14 H -0.26 -10.34 6.70 99.48 0.67 -9.68 15 15 H -0.26 -9.92 7.11 99.48 0.71 -9.22 15 16 H -0.24 -10.10 6.87 99.48 0.68 -9.41 15 17 C -0.15 -6.54 6.78 22.83 0.15 -6.38 15 18 C 0.04 1.50 5.92 -19.65 -0.12 1.38 15 19 C 0.28 11.74 13.97 88.33 1.23 12.98 15 20 N -0.45 -19.04 18.54 19.01 0.35 -18.68 15 21 C -0.19 -7.54 6.03 -19.86 -0.12 -7.66 15 22 H 0.11 2.01 8.14 -2.39 -0.02 1.99 15 23 H 0.07 1.27 7.83 -2.39 -0.02 1.25 15 24 H 0.07 1.27 7.81 -2.39 -0.02 1.25 15 25 H 0.19 4.26 6.89 -2.91 -0.02 4.24 15 26 H 0.13 4.80 8.06 -2.91 -0.02 4.78 15 27 H 0.30 12.85 8.30 -92.70 -0.77 12.08 15 28 H 0.12 5.13 4.71 -2.91 -0.01 5.11 15 Total: -1.00 -52.07 265.30 5.33 -46.74 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 1.15 Total: 6.65 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: 4.03 Total: -25.28 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.66 Total: -56.84 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -0.87 Total: -12.22 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 1.68 Total: 39.12 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -1.32 Total: 1.83 kcal Total: -52.07 5.33 -46.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396196542.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.163 kcal (2) G-P(sol) polarization free energy of solvation -52.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds