Wall clock time and date at job start Mon Mar 30 2020 06:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35688 * 117.00429 * 2 1 4 4 C 1.37284 * 120.05440 * 359.73259 * 3 2 1 5 5 C 1.40242 * 120.71334 * 179.76796 * 4 3 2 6 6 S 1.75995 * 130.04401 * 180.20032 * 5 4 3 7 7 C 1.75235 * 92.33532 * 180.27727 * 6 5 4 8 8 C 1.43201 * 124.34058 * 179.97438 * 7 6 5 9 9 N 8.71266 * 101.50316 * 359.97438 * 2 1 3 10 10 C 1.33561 * 111.32748 * 0.02562 * 7 6 5 11 11 C 1.40527 * 120.18285 * 0.50048 * 5 4 3 12 12 C 1.40723 * 119.19800 * 359.75912 * 11 5 4 13 13 C 1.39744 * 120.19986 * 359.97438 * 12 11 5 14 14 C 1.41100 * 120.09587 * 180.02562 * 13 12 11 15 15 H 1.07992 * 120.00249 * 154.28228 * 14 13 12 16 16 C 1.39881 * 119.99403 * 334.29508 * 14 13 12 17 17 N 1.30907 * 120.00081 * 342.59597 * 16 14 13 18 18 Si 1.86799 * 119.99758 * 162.60361 * 16 14 13 19 19 H 1.48498 * 109.47370 * 89.99299 * 18 16 14 20 20 H 1.48500 * 109.47117 * 209.99441 * 18 16 14 21 21 H 1.48504 * 109.47388 * 329.99556 * 18 16 14 22 22 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46832 * 299.99850 * 1 2 3 24 24 H 1.09001 * 109.46852 * 59.99494 * 1 2 3 25 25 H 1.08007 * 119.64853 * 0.02562 * 4 3 2 26 26 H 1.08003 * 122.67280 * 180.02562 * 10 7 6 27 27 H 1.08000 * 119.90324 * 180.02562 * 12 11 5 28 28 H 0.97005 * 119.99990 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 1.2986 2.3611 -0.0055 5 6 1.9209 3.6178 -0.0007 6 16 1.2160 5.2304 -0.0012 7 6 2.7917 5.9971 -0.0015 8 6 3.0008 7.4138 -0.0024 9 7 3.1665 8.5377 -0.0038 10 6 3.7729 5.0909 -0.0018 11 6 3.3231 3.7119 -0.0007 12 6 4.0902 2.5322 -0.0005 13 6 3.4610 1.2845 0.0004 14 6 4.2324 0.1030 0.0012 15 1 3.8221 -0.8095 0.4076 16 6 5.5287 0.1139 -0.5242 17 7 5.9080 1.0891 -1.3109 18 14 6.7185 -1.2633 -0.1035 19 1 6.5889 -2.3526 -1.1045 20 1 8.1079 -0.7393 -0.1194 21 1 6.4048 -1.7931 1.2478 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2203 2.2990 -0.0095 26 1 4.8180 5.3632 -0.0015 27 1 5.1686 2.5912 0.0000 28 1 6.8068 1.0964 -1.6755 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396196617.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:58 Heat of formation + Delta-G solvation = 25.310267 kcal Electronic energy + Delta-G solvation = -15852.421967 eV Core-core repulsion = 13152.981514 eV Total energy + Delta-G solvation = -2699.440454 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.10881 -37.36260 -36.30256 -34.60778 -32.90023 -30.01664 -28.58986 -26.78418 -25.58697 -23.27671 -21.76484 -20.04132 -18.38498 -17.61545 -16.85519 -15.51241 -15.22263 -14.96466 -14.82173 -14.27098 -13.77948 -13.45781 -13.13456 -12.93279 -12.42124 -12.38299 -12.26697 -11.81981 -11.54327 -11.29061 -11.14665 -11.01431 -10.73035 -10.46947 -10.20586 -9.66877 -9.59659 -9.26113 -8.57824 -7.31624 -6.96208 -6.88264 -4.45838 1.11786 1.81678 2.39359 2.67681 2.83781 3.00394 3.01511 3.07976 3.23907 3.65198 3.83149 4.14024 4.25925 4.35905 5.26520 5.53702 5.61142 5.62584 5.80644 5.86700 6.08214 6.18735 6.33050 6.69212 6.87950 6.98152 7.09408 7.34439 7.52572 7.68141 7.80561 8.08174 8.42512 8.58268 8.71524 10.00913 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020253 B = 0.006953 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.157403 B = 4025.990588 C = 5323.193733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.304 6.304 3 C 0.083 3.917 4 C -0.168 4.168 5 C -0.181 4.181 6 S 0.070 5.930 7 C -0.156 4.156 8 C 0.296 3.704 9 N -0.436 5.436 10 C -0.016 4.016 11 C -0.083 4.083 12 C -0.119 4.119 13 C 0.095 3.905 14 C -0.437 4.437 15 H 0.088 0.912 16 C 0.073 3.927 17 N -0.788 5.788 18 Si 0.912 3.088 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.259 1.259 22 H 0.087 0.913 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.108 0.892 26 H 0.141 0.859 27 H 0.135 0.865 28 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.524 -1.027 1.701 4.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.217 6.217 3 C 0.036 3.964 4 C -0.192 4.192 5 C -0.297 4.297 6 S 0.331 5.669 7 C -0.273 4.273 8 C -0.019 4.019 9 N -0.114 5.114 10 C -0.053 4.053 11 C -0.089 4.089 12 C -0.142 4.142 13 C 0.091 3.909 14 C -0.466 4.466 15 H 0.106 0.894 16 C -0.146 4.146 17 N -0.413 5.413 18 Si 0.736 3.264 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.183 1.183 22 H 0.106 0.894 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.126 0.874 26 H 0.159 0.841 27 H 0.152 0.848 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.462 1.198 1.547 5.802 hybrid contribution 1.588 -1.331 -0.021 2.072 sum -3.875 -0.133 1.526 4.166 Atomic orbital electron populations 1.22871 0.80875 1.02485 1.00469 1.86049 1.19011 1.27547 1.89123 1.19203 0.92511 0.82505 1.02185 1.19831 0.97728 0.90014 1.11665 1.21720 0.95481 0.94673 1.17803 1.83395 1.03843 0.97366 1.82285 1.18971 0.99419 0.87917 1.21024 1.24632 0.93352 0.91351 0.92590 1.81199 1.07842 1.11293 1.11078 1.21338 0.98780 0.91184 0.93996 1.18853 0.91703 0.92177 1.06140 1.20952 0.99252 0.88059 1.05979 1.16847 0.86956 0.94056 0.93034 1.19438 0.97077 0.96610 1.33466 0.89434 1.25926 0.98854 0.97187 0.92626 1.69813 1.19676 1.30742 1.21068 0.86236 0.78943 0.80865 0.80368 1.19384 1.20002 1.18285 0.89407 0.93646 0.93585 0.87426 0.84094 0.84766 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.41 15 2 O -0.30 -6.16 9.78 -18.77 -0.18 -6.35 15 3 C 0.08 1.84 6.70 -38.57 -0.26 1.58 15 4 C -0.17 -3.39 9.05 -39.18 -0.35 -3.75 15 5 C -0.18 -3.67 6.50 -37.97 -0.25 -3.92 15 6 S 0.07 1.21 23.16 -107.50 -2.49 -1.28 15 7 C -0.16 -2.72 6.15 -39.29 -0.24 -2.96 15 8 C 0.30 5.09 15.73 -22.47 -0.35 4.74 15 9 N -0.44 -7.88 18.54 41.84 0.78 -7.10 15 10 C -0.02 -0.28 10.24 -38.52 -0.39 -0.68 15 11 C -0.08 -1.76 6.02 -105.39 -0.63 -2.39 15 12 C -0.12 -2.76 8.73 -38.08 -0.33 -3.09 15 13 C 0.10 2.29 5.56 -106.89 -0.59 1.69 15 14 C -0.44 -10.59 8.69 -37.88 -0.33 -10.92 15 15 H 0.09 2.10 7.65 -52.49 -0.40 1.69 15 16 C 0.07 1.66 5.12 -17.33 -0.09 1.58 15 17 N -0.79 -18.54 11.00 55.54 0.61 -17.92 15 18 Si 0.91 17.29 29.59 -169.99 -5.03 12.26 15 19 H -0.27 -5.09 7.11 56.52 0.40 -4.68 15 20 H -0.28 -5.11 7.11 56.52 0.40 -4.71 15 21 H -0.26 -4.90 7.11 56.52 0.40 -4.50 15 22 H 0.09 1.03 8.14 -51.93 -0.42 0.60 15 23 H 0.04 0.60 7.66 -51.93 -0.40 0.21 15 24 H 0.05 0.63 7.64 -51.93 -0.40 0.23 15 25 H 0.11 1.87 6.21 -52.48 -0.33 1.55 15 26 H 0.14 2.24 8.06 -52.48 -0.42 1.81 15 27 H 0.13 3.17 6.18 -52.49 -0.32 2.84 15 28 H 0.28 6.09 8.30 -40.82 -0.34 5.75 15 LS Contribution 271.50 15.07 4.09 4.09 Total: -1.00 -25.32 271.50 -6.89 -32.21 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -1.83 Total: 0.80 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -2.84 Total: -16.71 kcal Atomic # 7 Polarization: -26.41 SS G_CDS: 1.39 Total: -25.03 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.18 Total: -6.35 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.49 Total: -1.28 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -25.32 -6.89 -32.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396196617.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.518 kcal (2) G-P(sol) polarization free energy of solvation -25.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds