Wall clock time and date at job start Mon Mar 30 2020 06:21:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35688 * 117.00429 * 2 1
4 4 C 1.37284 * 120.05440 * 359.73259 * 3 2 1
5 5 C 1.40242 * 120.71334 * 179.76796 * 4 3 2
6 6 S 1.75995 * 130.04401 * 180.20032 * 5 4 3
7 7 C 1.75235 * 92.33532 * 180.27727 * 6 5 4
8 8 C 1.43201 * 124.34058 * 179.97438 * 7 6 5
9 9 N 8.71266 * 101.50316 * 359.97438 * 2 1 3
10 10 C 1.33561 * 111.32748 * 0.02562 * 7 6 5
11 11 C 1.40527 * 120.18285 * 0.50048 * 5 4 3
12 12 C 1.40723 * 119.19800 * 359.75912 * 11 5 4
13 13 C 1.39744 * 120.19986 * 359.97438 * 12 11 5
14 14 C 1.41100 * 120.09587 * 180.02562 * 13 12 11
15 15 H 1.07992 * 120.00249 * 154.28228 * 14 13 12
16 16 C 1.39881 * 119.99403 * 334.29508 * 14 13 12
17 17 N 1.30907 * 120.00081 * 342.59597 * 16 14 13
18 18 Si 1.86799 * 119.99758 * 162.60361 * 16 14 13
19 19 H 1.48498 * 109.47370 * 89.99299 * 18 16 14
20 20 H 1.48500 * 109.47117 * 209.99441 * 18 16 14
21 21 H 1.48504 * 109.47388 * 329.99556 * 18 16 14
22 22 H 1.09000 * 109.46927 * 179.97438 * 1 2 3
23 23 H 1.09000 * 109.46832 * 299.99850 * 1 2 3
24 24 H 1.09001 * 109.46852 * 59.99494 * 1 2 3
25 25 H 1.08007 * 119.64853 * 0.02562 * 4 3 2
26 26 H 1.08003 * 122.67280 * 180.02562 * 10 7 6
27 27 H 1.08000 * 119.90324 * 180.02562 * 12 11 5
28 28 H 0.97005 * 119.99990 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0451 1.2089 0.0000
4 6 1.2986 2.3611 -0.0055
5 6 1.9209 3.6178 -0.0007
6 16 1.2160 5.2304 -0.0012
7 6 2.7917 5.9971 -0.0015
8 6 3.0008 7.4138 -0.0024
9 7 3.1665 8.5377 -0.0038
10 6 3.7729 5.0909 -0.0018
11 6 3.3231 3.7119 -0.0007
12 6 4.0902 2.5322 -0.0005
13 6 3.4610 1.2845 0.0004
14 6 4.2324 0.1030 0.0012
15 1 3.8221 -0.8095 0.4076
16 6 5.5287 0.1139 -0.5242
17 7 5.9080 1.0891 -1.3109
18 14 6.7185 -1.2633 -0.1035
19 1 6.5889 -2.3526 -1.1045
20 1 8.1079 -0.7393 -0.1194
21 1 6.4048 -1.7931 1.2478
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3633 0.5138 0.8900
24 1 -0.3633 0.5139 -0.8900
25 1 0.2203 2.2990 -0.0095
26 1 4.8180 5.3632 -0.0015
27 1 5.1686 2.5912 0.0000
28 1 6.8068 1.0964 -1.6755
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000396196617.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:21:58
Heat of formation + Delta-G solvation = 13.248607 kcal
Electronic energy + Delta-G solvation = -15852.945000 eV
Core-core repulsion = 13152.981514 eV
Total energy + Delta-G solvation = -2699.963486 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 259.041 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.66756 -38.86052 -37.77480 -36.22752 -34.47966 -31.66425 -30.14301 -28.09938
-27.25739 -24.77596 -23.38043 -21.61121 -19.88595 -19.25475 -18.40632 -17.12786
-16.71307 -16.37692 -16.29840 -15.80428 -15.21815 -14.87024 -14.64752 -14.49442
-13.92482 -13.90430 -13.77672 -13.36265 -13.09545 -12.78471 -12.62701 -12.40690
-12.15946 -11.98867 -11.83144 -11.23608 -11.16580 -10.84897 -10.17382 -8.94693
-8.60554 -8.41498 -6.21938 -0.38709 0.37026 0.74333 1.12189 1.26051
1.45000 1.50309 1.58671 1.81837 2.21187 2.26096 2.66607 2.75641
2.81909 3.55440 4.09962 4.30628 4.43702 4.51237 4.57245 4.68975
4.79333 4.80454 5.09020 5.25723 5.30979 5.43974 5.68975 5.84738
6.11039 6.27992 6.40394 6.73495 6.87133 7.06884 8.35344
Molecular weight = 259.04amu
Principal moments of inertia in cm(-1)
A = 0.020253 B = 0.006953 C = 0.005259
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1382.157403 B = 4025.990588 C = 5323.193733
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.019 3.981
2 O -0.328 6.328
3 C 0.075 3.925
4 C -0.170 4.170
5 C -0.192 4.192
6 S 0.129 5.871
7 C -0.148 4.148
8 C 0.309 3.691
9 N -0.444 5.444
10 C -0.022 4.022
11 C -0.097 4.097
12 C -0.138 4.138
13 C 0.063 3.937
14 C -0.473 4.473
15 H 0.077 0.923
16 C 0.038 3.962
17 N -0.819 5.819
18 Si 0.977 3.023
19 H -0.266 1.266
20 H -0.267 1.267
21 H -0.260 1.260
22 H 0.116 0.884
23 H 0.059 0.941
24 H 0.055 0.945
25 H 0.137 0.863
26 H 0.160 0.840
27 H 0.120 0.880
28 H 0.290 0.710
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.669 -0.329 1.878 5.981
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 O -0.242 6.242
3 C 0.027 3.973
4 C -0.194 4.194
5 C -0.308 4.308
6 S 0.391 5.609
7 C -0.266 4.266
8 C -0.006 4.006
9 N -0.122 5.122
10 C -0.060 4.060
11 C -0.102 4.102
12 C -0.161 4.161
13 C 0.059 3.941
14 C -0.502 4.502
15 H 0.096 0.904
16 C -0.177 4.177
17 N -0.445 5.445
18 Si 0.798 3.202
19 H -0.191 1.191
20 H -0.191 1.191
21 H -0.184 1.184
22 H 0.134 0.866
23 H 0.078 0.922
24 H 0.074 0.926
25 H 0.155 0.845
26 H 0.177 0.823
27 H 0.138 0.862
28 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -6.636 1.907 1.725 7.117
hybrid contribution 1.738 -1.414 -0.072 2.241
sum -4.899 0.493 1.653 5.194
Atomic orbital electron populations
1.23236 0.77893 1.04871 1.01541 1.86008 1.22130 1.27039 1.88976
1.19304 0.92274 0.83806 1.01909 1.20104 0.99117 0.89382 1.10779
1.22175 0.95815 0.96688 1.16120 1.83202 1.02390 0.94205 1.81141
1.19021 0.99745 0.87951 1.19897 1.24387 0.92995 0.90952 0.92264
1.81230 1.08162 1.11579 1.11223 1.21373 1.00096 0.89906 0.94587
1.19046 0.92257 0.92838 1.06104 1.20865 0.98854 0.88897 1.07507
1.17196 0.88496 0.94442 0.93954 1.19550 0.98542 0.96615 1.35493
0.90442 1.26615 0.99771 0.99344 0.92012 1.69856 1.20307 1.32388
1.21997 0.85268 0.77041 0.78052 0.79822 1.19074 1.19100 1.18397
0.86575 0.92243 0.92597 0.84518 0.82276 0.86244 0.89932
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.52 9.81 113.37 1.11 1.63 15
2 O -0.33 -13.28 9.78 -90.06 -0.88 -14.16 15
3 C 0.07 3.32 6.70 22.92 0.15 3.48 15
4 C -0.17 -6.64 9.05 22.53 0.20 -6.44 15
5 C -0.19 -7.52 6.50 23.32 0.15 -7.36 15
6 S 0.13 4.06 23.16 -56.49 -1.31 2.76 15
7 C -0.15 -4.81 6.15 22.46 0.14 -4.68 15
8 C 0.31 9.84 15.73 88.33 1.39 11.22 15
9 N -0.44 -14.95 18.54 19.00 0.35 -14.60 15
10 C -0.02 -0.78 10.24 22.96 0.24 -0.55 15
11 C -0.10 -4.05 6.02 -20.37 -0.12 -4.18 15
12 C -0.14 -6.60 8.73 23.24 0.20 -6.40 15
13 C 0.06 3.13 5.56 -21.34 -0.12 3.01 15
14 C -0.47 -23.95 8.69 23.37 0.20 -23.74 15
15 H 0.08 3.90 7.65 -2.91 -0.02 3.88 15
16 C 0.04 1.79 5.12 85.23 0.44 2.23 15
17 N -0.82 -39.90 11.00 21.82 0.24 -39.66 15
18 Si 0.98 36.27 29.59 68.60 2.03 38.30 15
19 H -0.27 -9.64 7.11 99.48 0.71 -8.94 15
20 H -0.27 -9.41 7.11 99.48 0.71 -8.70 15
21 H -0.26 -9.56 7.11 99.48 0.71 -8.86 15
22 H 0.12 2.45 8.14 -2.39 -0.02 2.43 15
23 H 0.06 1.44 7.66 -2.39 -0.02 1.42 15
24 H 0.06 1.40 7.64 -2.39 -0.02 1.38 15
25 H 0.14 4.39 6.21 -2.91 -0.02 4.38 15
26 H 0.16 4.87 8.06 -2.91 -0.02 4.85 15
27 H 0.12 5.93 6.18 -2.91 -0.02 5.91 15
28 H 0.29 12.78 8.30 -92.70 -0.77 12.01 15
Total: -1.00 -54.99 271.50 5.63 -49.36
By element:
Atomic # 1 Polarization: 8.56 SS G_CDS: 1.21 Total: 9.77 kcal
Atomic # 6 Polarization: -35.75 SS G_CDS: 3.98 Total: -31.76 kcal
Atomic # 7 Polarization: -54.85 SS G_CDS: 0.59 Total: -54.26 kcal
Atomic # 8 Polarization: -13.28 SS G_CDS: -0.88 Total: -14.16 kcal
Atomic # 14 Polarization: 36.27 SS G_CDS: 2.03 Total: 38.30 kcal
Atomic # 16 Polarization: 4.06 SS G_CDS: -1.31 Total: 2.76 kcal
Total: -54.99 5.63 -49.36 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000396196617.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.607 kcal
(2) G-P(sol) polarization free energy of solvation -54.990 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.616 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.632 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.358 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.249 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds