Wall clock time and date at job start Mon Mar 30 2020 06:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35688 * 117.00429 * 2 1 4 4 C 1.37284 * 120.05440 * 359.73259 * 3 2 1 5 5 C 1.40242 * 120.71334 * 179.76796 * 4 3 2 6 6 S 1.75995 * 130.04401 * 180.20032 * 5 4 3 7 7 C 1.75235 * 92.33532 * 180.27727 * 6 5 4 8 8 C 1.43201 * 124.34058 * 179.97438 * 7 6 5 9 9 N 8.71266 * 101.50316 * 359.97438 * 2 1 3 10 10 C 1.33561 * 111.32748 * 0.02562 * 7 6 5 11 11 C 1.40527 * 120.18285 * 0.50048 * 5 4 3 12 12 C 1.40723 * 119.19800 * 359.75912 * 11 5 4 13 13 C 1.39744 * 120.19986 * 359.97438 * 12 11 5 14 14 C 1.41100 * 120.09587 * 180.02562 * 13 12 11 15 15 H 1.07992 * 120.00249 * 154.28228 * 14 13 12 16 16 C 1.39881 * 119.99403 * 334.29508 * 14 13 12 17 17 N 1.30907 * 120.00081 * 342.59597 * 16 14 13 18 18 Si 1.86799 * 119.99758 * 162.60361 * 16 14 13 19 19 H 1.48498 * 109.47370 * 89.99299 * 18 16 14 20 20 H 1.48500 * 109.47117 * 209.99441 * 18 16 14 21 21 H 1.48504 * 109.47388 * 329.99556 * 18 16 14 22 22 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46832 * 299.99850 * 1 2 3 24 24 H 1.09001 * 109.46852 * 59.99494 * 1 2 3 25 25 H 1.08007 * 119.64853 * 0.02562 * 4 3 2 26 26 H 1.08003 * 122.67280 * 180.02562 * 10 7 6 27 27 H 1.08000 * 119.90324 * 180.02562 * 12 11 5 28 28 H 0.97005 * 119.99990 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 1.2986 2.3611 -0.0055 5 6 1.9209 3.6178 -0.0007 6 16 1.2160 5.2304 -0.0012 7 6 2.7917 5.9971 -0.0015 8 6 3.0008 7.4138 -0.0024 9 7 3.1665 8.5377 -0.0038 10 6 3.7729 5.0909 -0.0018 11 6 3.3231 3.7119 -0.0007 12 6 4.0902 2.5322 -0.0005 13 6 3.4610 1.2845 0.0004 14 6 4.2324 0.1030 0.0012 15 1 3.8221 -0.8095 0.4076 16 6 5.5287 0.1139 -0.5242 17 7 5.9080 1.0891 -1.3109 18 14 6.7185 -1.2633 -0.1035 19 1 6.5889 -2.3526 -1.1045 20 1 8.1079 -0.7393 -0.1194 21 1 6.4048 -1.7931 1.2478 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2203 2.2990 -0.0095 26 1 4.8180 5.3632 -0.0015 27 1 5.1686 2.5912 0.0000 28 1 6.8068 1.0964 -1.6755 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396196617.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:58 Heat of formation + Delta-G solvation = 13.248607 kcal Electronic energy + Delta-G solvation = -15852.945000 eV Core-core repulsion = 13152.981514 eV Total energy + Delta-G solvation = -2699.963486 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.66756 -38.86052 -37.77480 -36.22752 -34.47966 -31.66425 -30.14301 -28.09938 -27.25739 -24.77596 -23.38043 -21.61121 -19.88595 -19.25475 -18.40632 -17.12786 -16.71307 -16.37692 -16.29840 -15.80428 -15.21815 -14.87024 -14.64752 -14.49442 -13.92482 -13.90430 -13.77672 -13.36265 -13.09545 -12.78471 -12.62701 -12.40690 -12.15946 -11.98867 -11.83144 -11.23608 -11.16580 -10.84897 -10.17382 -8.94693 -8.60554 -8.41498 -6.21938 -0.38709 0.37026 0.74333 1.12189 1.26051 1.45000 1.50309 1.58671 1.81837 2.21187 2.26096 2.66607 2.75641 2.81909 3.55440 4.09962 4.30628 4.43702 4.51237 4.57245 4.68975 4.79333 4.80454 5.09020 5.25723 5.30979 5.43974 5.68975 5.84738 6.11039 6.27992 6.40394 6.73495 6.87133 7.06884 8.35344 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020253 B = 0.006953 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.157403 B = 4025.990588 C = 5323.193733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.328 6.328 3 C 0.075 3.925 4 C -0.170 4.170 5 C -0.192 4.192 6 S 0.129 5.871 7 C -0.148 4.148 8 C 0.309 3.691 9 N -0.444 5.444 10 C -0.022 4.022 11 C -0.097 4.097 12 C -0.138 4.138 13 C 0.063 3.937 14 C -0.473 4.473 15 H 0.077 0.923 16 C 0.038 3.962 17 N -0.819 5.819 18 Si 0.977 3.023 19 H -0.266 1.266 20 H -0.267 1.267 21 H -0.260 1.260 22 H 0.116 0.884 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.137 0.863 26 H 0.160 0.840 27 H 0.120 0.880 28 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.669 -0.329 1.878 5.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.242 6.242 3 C 0.027 3.973 4 C -0.194 4.194 5 C -0.308 4.308 6 S 0.391 5.609 7 C -0.266 4.266 8 C -0.006 4.006 9 N -0.122 5.122 10 C -0.060 4.060 11 C -0.102 4.102 12 C -0.161 4.161 13 C 0.059 3.941 14 C -0.502 4.502 15 H 0.096 0.904 16 C -0.177 4.177 17 N -0.445 5.445 18 Si 0.798 3.202 19 H -0.191 1.191 20 H -0.191 1.191 21 H -0.184 1.184 22 H 0.134 0.866 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.155 0.845 26 H 0.177 0.823 27 H 0.138 0.862 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.636 1.907 1.725 7.117 hybrid contribution 1.738 -1.414 -0.072 2.241 sum -4.899 0.493 1.653 5.194 Atomic orbital electron populations 1.23236 0.77893 1.04871 1.01541 1.86008 1.22130 1.27039 1.88976 1.19304 0.92274 0.83806 1.01909 1.20104 0.99117 0.89382 1.10779 1.22175 0.95815 0.96688 1.16120 1.83202 1.02390 0.94205 1.81141 1.19021 0.99745 0.87951 1.19897 1.24387 0.92995 0.90952 0.92264 1.81230 1.08162 1.11579 1.11223 1.21373 1.00096 0.89906 0.94587 1.19046 0.92257 0.92838 1.06104 1.20865 0.98854 0.88897 1.07507 1.17196 0.88496 0.94442 0.93954 1.19550 0.98542 0.96615 1.35493 0.90442 1.26615 0.99771 0.99344 0.92012 1.69856 1.20307 1.32388 1.21997 0.85268 0.77041 0.78052 0.79822 1.19074 1.19100 1.18397 0.86575 0.92243 0.92597 0.84518 0.82276 0.86244 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.81 113.37 1.11 1.63 15 2 O -0.33 -13.28 9.78 -90.06 -0.88 -14.16 15 3 C 0.07 3.32 6.70 22.92 0.15 3.48 15 4 C -0.17 -6.64 9.05 22.53 0.20 -6.44 15 5 C -0.19 -7.52 6.50 23.32 0.15 -7.36 15 6 S 0.13 4.06 23.16 -56.49 -1.31 2.76 15 7 C -0.15 -4.81 6.15 22.46 0.14 -4.68 15 8 C 0.31 9.84 15.73 88.33 1.39 11.22 15 9 N -0.44 -14.95 18.54 19.00 0.35 -14.60 15 10 C -0.02 -0.78 10.24 22.96 0.24 -0.55 15 11 C -0.10 -4.05 6.02 -20.37 -0.12 -4.18 15 12 C -0.14 -6.60 8.73 23.24 0.20 -6.40 15 13 C 0.06 3.13 5.56 -21.34 -0.12 3.01 15 14 C -0.47 -23.95 8.69 23.37 0.20 -23.74 15 15 H 0.08 3.90 7.65 -2.91 -0.02 3.88 15 16 C 0.04 1.79 5.12 85.23 0.44 2.23 15 17 N -0.82 -39.90 11.00 21.82 0.24 -39.66 15 18 Si 0.98 36.27 29.59 68.60 2.03 38.30 15 19 H -0.27 -9.64 7.11 99.48 0.71 -8.94 15 20 H -0.27 -9.41 7.11 99.48 0.71 -8.70 15 21 H -0.26 -9.56 7.11 99.48 0.71 -8.86 15 22 H 0.12 2.45 8.14 -2.39 -0.02 2.43 15 23 H 0.06 1.44 7.66 -2.39 -0.02 1.42 15 24 H 0.06 1.40 7.64 -2.39 -0.02 1.38 15 25 H 0.14 4.39 6.21 -2.91 -0.02 4.38 15 26 H 0.16 4.87 8.06 -2.91 -0.02 4.85 15 27 H 0.12 5.93 6.18 -2.91 -0.02 5.91 15 28 H 0.29 12.78 8.30 -92.70 -0.77 12.01 15 Total: -1.00 -54.99 271.50 5.63 -49.36 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 1.21 Total: 9.77 kcal Atomic # 6 Polarization: -35.75 SS G_CDS: 3.98 Total: -31.76 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.59 Total: -54.26 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.88 Total: -14.16 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 2.03 Total: 38.30 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -1.31 Total: 2.76 kcal Total: -54.99 5.63 -49.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396196617.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.607 kcal (2) G-P(sol) polarization free energy of solvation -54.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds