Wall clock time and date at job start Mon Mar 30 2020 06:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35364 * 117.00006 * 2 1 4 4 C 1.41724 * 119.42294 * 269.72758 * 3 2 1 5 5 C 1.45440 * 129.10400 * 0.52910 * 4 3 2 6 6 C 1.31895 * 114.89397 * 179.67030 * 5 4 3 7 7 S 1.75311 * 111.29826 * 359.79086 * 6 5 4 8 8 C 1.39275 * 119.04520 * 179.76840 * 4 3 2 9 9 C 1.46828 * 119.60405 * 0.48119 * 8 4 3 10 10 C 1.40895 * 120.23763 * 179.78624 * 9 8 4 11 11 H 1.08000 * 119.99952 * 24.77452 * 10 9 8 12 12 C 1.39787 * 119.99888 * 204.77206 * 10 9 8 13 13 N 1.30967 * 119.99650 * 17.94000 * 12 10 9 14 14 Si 1.86797 * 119.99881 * 197.93594 * 12 10 9 15 15 H 1.48497 * 109.47257 * 94.69003 * 14 12 10 16 16 H 1.48499 * 109.47116 * 214.68932 * 14 12 10 17 17 H 1.48502 * 109.47403 * 334.68834 * 14 12 10 18 18 C 1.40151 * 119.52493 * 359.76413 * 9 8 4 19 19 C 1.39257 * 119.74876 * 359.97438 * 18 9 8 20 20 C 1.43206 * 119.53924 * 179.97438 * 19 18 9 21 21 N 3.49248 * 95.33093 * 79.41891 * 2 1 3 22 22 H 1.09000 * 109.46976 * 59.99579 * 1 2 3 23 23 H 1.09000 * 109.47047 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47137 * 300.00012 * 1 2 3 25 25 H 1.07995 * 122.55316 * 359.44467 * 5 4 3 26 26 H 1.07995 * 124.34819 * 179.80093 * 6 5 4 27 27 H 0.97008 * 119.99861 * 179.97438 * 13 12 10 28 28 H 1.07990 * 120.12412 * 180.02562 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2061 0.0000 4 6 2.3649 1.8238 -1.2344 5 6 2.1196 1.3512 -2.5879 6 6 2.5334 2.1619 -3.5425 7 16 3.2693 3.6069 -2.8762 8 6 2.9927 3.0669 -1.2253 9 6 3.3178 3.7059 0.0561 10 6 3.9570 4.9613 0.0809 11 1 3.8596 5.6336 -0.7587 12 6 4.7171 5.3367 1.1924 13 7 5.1306 4.4280 2.0400 14 14 5.1432 7.1344 1.4684 15 1 4.1440 7.7454 2.3814 16 1 6.4948 7.2352 2.0751 17 1 5.1295 7.8517 0.1682 18 6 2.9874 3.0584 1.2543 19 6 2.3549 1.8182 1.2179 20 6 2.0198 1.1603 2.4449 21 7 1.7535 0.6385 3.4182 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6388 0.4068 -2.7955 26 1 2.4318 1.9613 -4.5988 27 1 5.6584 4.6885 2.8111 28 1 3.2216 3.5197 2.2022 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396196671.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:50 Heat of formation + Delta-G solvation = 24.654454 kcal Electronic energy + Delta-G solvation = -16203.039846 eV Core-core repulsion = 13503.570955 eV Total energy + Delta-G solvation = -2699.468892 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.01089 -36.58986 -35.87855 -34.91402 -33.04664 -29.97121 -28.44970 -26.79730 -24.94563 -23.24442 -21.71121 -20.47312 -17.92135 -17.32296 -16.69451 -16.07716 -15.16756 -14.97717 -14.75611 -13.78650 -13.47000 -13.36620 -12.96287 -12.89998 -12.37188 -12.18272 -12.00934 -11.75505 -11.53659 -11.33381 -11.27697 -10.83943 -10.72541 -10.35891 -10.02079 -9.95121 -9.44652 -9.16078 -8.35613 -7.64760 -7.23788 -6.95327 -4.68584 1.67124 1.74439 2.44736 2.76085 2.89728 2.93567 2.96304 3.20249 3.47855 3.64582 3.73156 4.25370 4.64163 4.82771 5.15857 5.41546 5.74625 5.81159 5.89754 5.97761 6.18153 6.29184 6.60906 6.62921 6.74361 6.91452 6.94304 7.21910 7.42315 7.58618 7.99392 8.16517 8.31508 8.34827 8.50666 9.71845 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.017047 B = 0.009374 C = 0.006246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.086444 B = 2986.417281 C = 4481.535081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.327 6.327 3 C 0.013 3.987 4 C -0.052 4.052 5 C -0.112 4.112 6 C -0.216 4.216 7 S 0.064 5.936 8 C -0.192 4.192 9 C 0.146 3.854 10 C -0.427 4.427 11 H 0.091 0.909 12 C 0.073 3.927 13 N -0.766 5.766 14 Si 0.918 3.082 15 H -0.263 1.263 16 H -0.273 1.273 17 H -0.256 1.256 18 C -0.133 4.133 19 C -0.006 4.006 20 C 0.286 3.714 21 N -0.464 5.464 22 H 0.040 0.960 23 H 0.078 0.922 24 H 0.034 0.966 25 H 0.131 0.869 26 H 0.153 0.847 27 H 0.292 0.708 28 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.034 0.963 -6.286 7.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.243 6.243 3 C -0.037 4.037 4 C -0.060 4.060 5 C -0.144 4.144 6 C -0.349 4.349 7 S 0.327 5.673 8 C -0.308 4.308 9 C 0.140 3.860 10 C -0.455 4.455 11 H 0.109 0.891 12 C -0.150 4.150 13 N -0.388 5.388 14 Si 0.741 3.259 15 H -0.188 1.188 16 H -0.198 1.198 17 H -0.180 1.180 18 C -0.159 4.159 19 C -0.011 4.011 20 C -0.028 4.028 21 N -0.141 5.141 22 H 0.058 0.942 23 H 0.096 0.904 24 H 0.053 0.947 25 H 0.148 0.852 26 H 0.171 0.829 27 H 0.103 0.897 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.552 1.213 -5.292 5.999 hybrid contribution -0.432 -0.263 0.388 0.638 sum -2.984 0.950 -4.904 5.818 Atomic orbital electron populations 1.22957 0.82205 1.01413 0.99865 1.85965 1.17957 1.26204 1.94180 1.17536 1.07869 0.89387 0.88925 1.18875 1.01508 0.93656 0.91932 1.20798 1.02604 1.00240 0.90746 1.24916 1.07719 1.00010 1.02295 1.83604 1.64444 1.21323 0.97913 1.23661 1.12796 0.98163 0.96182 1.17791 0.89377 0.91954 0.86871 1.19620 1.23515 0.99975 1.02344 0.89115 1.26054 0.93817 1.00567 0.94533 1.69844 1.23260 1.35465 1.10241 0.86101 0.78736 0.80889 0.80185 1.18771 1.19751 1.17978 1.21027 1.02740 0.93095 0.98998 1.16039 1.04765 0.95133 0.85162 1.25954 0.92179 0.91966 0.92679 1.81037 1.10901 1.10287 1.11886 0.94178 0.90355 0.94746 0.85172 0.82912 0.89716 0.84473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.11 101.05 1.12 1.62 15 2 O -0.33 -6.63 9.61 -17.78 -0.17 -6.80 15 3 C 0.01 0.28 5.78 -37.66 -0.22 0.06 15 4 C -0.05 -1.10 6.03 -105.32 -0.64 -1.73 15 5 C -0.11 -2.02 10.25 -38.62 -0.40 -2.41 15 6 C -0.22 -3.54 11.03 28.83 0.32 -3.22 15 7 S 0.06 1.19 23.03 -107.50 -2.48 -1.29 15 8 C -0.19 -4.23 6.55 -35.72 -0.23 -4.47 15 9 C 0.15 3.45 5.73 -104.70 -0.60 2.85 15 10 C -0.43 -9.80 8.91 -38.00 -0.34 -10.14 15 11 H 0.09 2.00 7.87 -52.49 -0.41 1.58 15 12 C 0.07 1.58 5.13 -17.34 -0.09 1.49 15 13 N -0.77 -17.48 10.98 55.54 0.61 -16.87 15 14 Si 0.92 16.38 29.60 -169.99 -5.03 11.35 15 15 H -0.26 -4.67 7.11 56.52 0.40 -4.27 15 16 H -0.27 -4.81 7.11 56.52 0.40 -4.41 15 17 H -0.26 -4.52 7.11 56.52 0.40 -4.12 15 18 C -0.13 -3.11 8.35 -38.49 -0.32 -3.43 15 19 C -0.01 -0.13 5.72 -107.00 -0.61 -0.74 15 20 C 0.29 6.38 14.72 -22.47 -0.33 6.05 15 21 N -0.46 -10.47 18.54 41.84 0.78 -9.70 15 22 H 0.04 0.60 8.14 -51.93 -0.42 0.18 15 23 H 0.08 1.06 8.14 -51.93 -0.42 0.64 15 24 H 0.03 0.57 8.14 -51.93 -0.42 0.15 15 25 H 0.13 2.07 8.06 -52.49 -0.42 1.65 15 26 H 0.15 1.97 8.06 -52.49 -0.42 1.54 15 27 H 0.29 6.02 8.30 -40.82 -0.34 5.68 15 28 H 0.14 3.29 6.16 -52.49 -0.32 2.97 15 LS Contribution 275.25 15.07 4.15 4.15 Total: -1.00 -25.17 275.25 -6.46 -31.63 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -1.98 Total: 1.59 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -2.33 Total: -14.07 kcal Atomic # 7 Polarization: -27.96 SS G_CDS: 1.39 Total: -26.57 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.17 Total: -6.80 kcal Atomic # 14 Polarization: 16.38 SS G_CDS: -5.03 Total: 11.35 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.48 Total: -1.29 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -25.17 -6.46 -31.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396196671.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.286 kcal (2) G-P(sol) polarization free energy of solvation -25.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds