Wall clock time and date at job start Mon Mar 30 2020 06:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35664 * 116.99851 * 2 1 4 4 C 1.39727 * 120.05853 * 90.00274 * 3 2 1 5 5 S 1.76034 * 130.17478 * 0.02562 * 4 3 2 6 6 C 1.75478 * 91.64535 * 180.02562 * 5 4 3 7 7 C 1.43201 * 124.76822 * 179.97438 * 6 5 4 8 8 N 7.04727 * 103.74070 * 61.30936 * 2 1 3 9 9 C 1.35327 * 110.45805 * 0.02562 * 6 5 4 10 10 C 1.39835 * 115.41538 * 359.97438 * 9 6 5 11 11 C 1.42519 * 128.26977 * 180.02562 * 10 9 6 12 12 C 1.34928 * 121.05079 * 180.02562 * 11 10 9 13 13 C 1.40928 * 120.05870 * 270.27808 * 3 2 1 14 14 C 1.40667 * 120.23647 * 359.97070 * 13 3 2 15 15 H 1.07998 * 120.00358 * 330.17520 * 14 13 3 16 16 C 1.39970 * 120.00029 * 150.17464 * 14 13 3 17 17 N 1.30862 * 120.00034 * 161.87496 * 16 14 13 18 18 Si 1.86801 * 119.99762 * 341.87726 * 16 14 13 19 19 H 1.48496 * 109.47343 * 95.41038 * 18 16 14 20 20 H 1.48500 * 109.47229 * 215.41057 * 18 16 14 21 21 H 1.48499 * 109.47037 * 335.40867 * 18 16 14 22 22 H 1.08997 * 109.47191 * 60.00210 * 1 2 3 23 23 H 1.09002 * 109.46898 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47228 * 299.99948 * 1 2 3 25 25 H 1.08000 * 122.29135 * 179.97438 * 9 6 5 26 26 H 1.08003 * 119.47136 * 0.02562 * 11 10 9 27 27 H 1.07997 * 119.76390 * 179.97438 * 12 11 10 28 28 H 0.97010 * 119.99595 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 2.3626 1.8324 1.2094 5 16 2.0930 1.3016 2.8660 6 6 2.8335 2.7578 3.5066 7 6 2.9831 3.0528 4.8999 8 7 3.1029 3.2864 6.0051 9 6 3.2423 3.5632 2.4989 10 6 2.9975 3.0819 1.2090 11 6 3.3107 3.6982 -0.0373 12 6 3.0051 3.0983 -1.2066 13 6 2.3600 1.8404 -1.2197 14 6 2.0389 1.2218 -2.4415 15 1 2.0121 0.1443 -2.5107 16 6 1.7539 2.0026 -3.5678 17 7 1.8047 1.4709 -4.7624 18 14 1.3013 3.8036 -3.3654 19 1 2.5146 4.6416 -3.5410 20 1 0.2895 4.1774 -4.3860 21 1 0.7400 4.0234 -2.0082 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 3.7245 4.5127 2.6786 26 1 3.8005 4.6607 -0.0459 27 1 3.2516 3.5843 -2.1390 28 1 1.6076 2.0122 -5.5429 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396196673.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:00 Heat of formation + Delta-G solvation = 11.595593 kcal Electronic energy + Delta-G solvation = -16103.427388 eV Core-core repulsion = 13403.392222 eV Total energy + Delta-G solvation = -2700.035166 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.65109 -38.64756 -37.65309 -36.51499 -34.85824 -31.50115 -31.03326 -28.05769 -27.12846 -24.59800 -23.51678 -21.91822 -20.24089 -19.09604 -18.26718 -17.34941 -16.76620 -16.48148 -16.21389 -15.74632 -15.17470 -15.07939 -14.81378 -14.71572 -14.14281 -13.89030 -13.84452 -13.52100 -13.21747 -12.81006 -12.70850 -12.49810 -12.13094 -11.86125 -11.58043 -11.45832 -11.08023 -10.55889 -10.27020 -9.36065 -9.10401 -8.55391 -6.54071 -0.46292 0.41947 0.56870 1.00108 1.08423 1.29301 1.46641 1.51585 1.97853 2.05018 2.21521 2.54980 2.99368 3.04744 3.46436 4.13468 4.39406 4.42884 4.55825 4.61405 4.69990 4.73957 4.86438 4.90517 4.98008 5.20460 5.49869 5.59130 5.73749 5.93066 6.09835 6.36243 6.44273 6.53318 7.04327 7.93976 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.030322 B = 0.006985 C = 0.006001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.191214 B = 4007.616414 C = 4665.028686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.339 6.339 3 C -0.040 4.040 4 C -0.080 4.080 5 S 0.107 5.893 6 C -0.219 4.219 7 C 0.316 3.684 8 N -0.467 5.467 9 C 0.024 3.976 10 C -0.212 4.212 11 C -0.019 4.019 12 C -0.215 4.215 13 C 0.085 3.915 14 C -0.417 4.417 15 H 0.068 0.932 16 C 0.048 3.952 17 N -0.806 5.806 18 Si 0.961 3.039 19 H -0.238 1.238 20 H -0.274 1.274 21 H -0.247 1.247 22 H 0.033 0.967 23 H 0.102 0.898 24 H 0.041 0.959 25 H 0.174 0.826 26 H 0.155 0.845 27 H 0.123 0.877 28 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.921 5.518 3.366 6.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.256 6.256 3 C -0.092 4.092 4 C -0.197 4.197 5 S 0.371 5.629 6 C -0.336 4.336 7 C 0.003 3.997 8 N -0.145 5.145 9 C -0.010 4.010 10 C -0.217 4.217 11 C -0.039 4.039 12 C -0.234 4.234 13 C 0.078 3.922 14 C -0.444 4.444 15 H 0.086 0.914 16 C -0.173 4.173 17 N -0.429 5.429 18 Si 0.781 3.219 19 H -0.162 1.162 20 H -0.200 1.200 21 H -0.170 1.170 22 H 0.052 0.948 23 H 0.120 0.880 24 H 0.060 0.940 25 H 0.191 0.809 26 H 0.172 0.828 27 H 0.141 0.859 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.303 4.393 5.549 7.196 hybrid contribution 0.079 1.161 -1.525 1.919 sum -1.224 5.554 4.023 6.967 Atomic orbital electron populations 1.22979 0.80804 1.02997 0.99741 1.85958 1.19682 1.25802 1.94112 1.17742 1.09899 0.91995 0.89605 1.23102 1.02550 0.98023 0.96026 1.83869 1.64556 1.18972 0.95509 1.19177 1.21736 1.04426 0.88309 1.24368 0.91855 0.92464 0.91023 1.81227 1.12170 1.09589 1.11560 1.20443 0.93236 0.98850 0.88511 1.17771 1.13604 0.96149 0.94206 1.20802 0.94996 0.98772 0.89366 1.20817 1.06113 0.97907 0.98566 1.17982 0.90338 0.91908 0.92008 1.19497 1.36840 0.95960 0.92103 0.91428 1.27106 0.91321 1.05478 0.93384 1.69696 1.30929 1.41785 1.00441 0.85561 0.80079 0.76054 0.80157 1.16216 1.20024 1.17026 0.94842 0.88014 0.94011 0.80864 0.82769 0.85903 0.88340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.06 11.13 113.37 1.26 2.33 15 2 O -0.34 -14.81 9.70 -89.80 -0.87 -15.68 15 3 C -0.04 -1.74 5.78 23.29 0.13 -1.61 15 4 C -0.08 -3.13 6.41 23.10 0.15 -2.99 15 5 S 0.11 3.65 23.19 -56.49 -1.31 2.34 15 6 C -0.22 -6.75 6.23 22.84 0.14 -6.61 15 7 C 0.32 9.89 15.77 88.33 1.39 11.28 15 8 N -0.47 -15.68 18.54 19.00 0.35 -15.33 15 9 C 0.02 0.68 10.06 21.98 0.22 0.90 15 10 C -0.21 -7.27 5.87 -21.36 -0.13 -7.40 15 11 C -0.02 -0.63 9.98 22.58 0.23 -0.41 15 12 C -0.21 -8.29 7.04 22.28 0.16 -8.14 15 13 C 0.08 3.80 5.10 -21.26 -0.11 3.70 15 14 C -0.42 -20.34 9.16 23.28 0.21 -20.13 15 15 H 0.07 3.71 7.88 -2.91 -0.02 3.69 15 16 C 0.05 2.17 5.40 85.26 0.46 2.63 15 17 N -0.81 -37.64 13.93 21.83 0.30 -37.34 15 18 Si 0.96 34.52 24.51 68.60 1.68 36.20 15 19 H -0.24 -7.62 6.70 99.48 0.67 -6.96 15 20 H -0.27 -9.40 7.11 99.48 0.71 -8.69 15 21 H -0.25 -9.12 6.86 99.48 0.68 -8.44 15 22 H 0.03 1.25 8.14 -2.39 -0.02 1.23 15 23 H 0.10 3.02 8.14 -2.39 -0.02 3.00 15 24 H 0.04 1.37 8.14 -2.39 -0.02 1.35 15 25 H 0.17 3.61 8.06 -2.91 -0.02 3.58 15 26 H 0.15 3.65 8.06 -2.91 -0.02 3.63 15 27 H 0.12 4.46 4.73 -2.91 -0.01 4.44 15 28 H 0.31 12.51 8.30 -92.70 -0.77 11.74 15 Total: -1.00 -53.09 269.92 5.42 -47.66 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 1.15 Total: 8.58 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: 4.12 Total: -26.43 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.66 Total: -52.67 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.87 Total: -15.68 kcal Atomic # 14 Polarization: 34.52 SS G_CDS: 1.68 Total: 36.20 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -1.31 Total: 2.34 kcal Total: -53.09 5.42 -47.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396196673.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.260 kcal (2) G-P(sol) polarization free energy of solvation -53.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds