Wall clock time and date at job start Mon Mar 30 2020 06:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35508 * 116.99893 * 2 1 4 4 C 1.33468 * 124.65773 * 179.97438 * 3 2 1 5 5 C 1.40335 * 115.78394 * 180.02562 * 4 3 2 6 6 C 1.42137 * 128.14069 * 180.26444 * 5 4 3 7 7 C 1.34975 * 121.96535 * 180.22947 * 6 5 4 8 8 C 1.41315 * 120.55571 * 359.48953 * 7 6 5 9 9 C 1.40226 * 120.60499 * 180.23771 * 8 7 6 10 10 H 1.08002 * 119.99691 * 154.67200 * 9 8 7 11 11 C 1.40166 * 120.00040 * 334.65837 * 9 8 7 12 12 N 1.30723 * 120.00401 * 342.94790 * 11 9 8 13 13 Si 1.86804 * 119.99761 * 162.93738 * 11 9 8 14 14 H 1.48501 * 109.47062 * 90.00765 * 13 11 9 15 15 H 1.48503 * 109.47268 * 210.00585 * 13 11 9 16 16 H 1.48498 * 109.47419 * 330.00723 * 13 11 9 17 17 C 1.46393 * 118.78268 * 0.25234 * 8 7 6 18 18 C 1.43205 * 120.45648 * 180.02562 * 17 8 7 19 19 N 6.70129 * 86.73448 * 0.02562 * 2 1 3 20 20 C 1.40217 * 112.35903 * 0.02562 * 5 4 3 21 21 S 1.75479 * 124.65644 * 0.02562 * 3 2 1 22 22 H 1.09000 * 109.46447 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47606 * 300.00151 * 1 2 3 24 24 H 1.08999 * 109.46836 * 60.00653 * 1 2 3 25 25 H 1.07998 * 122.11347 * 0.02562 * 4 3 2 26 26 H 1.08004 * 119.01566 * 359.97438 * 6 5 4 27 27 H 1.07997 * 119.72398 * 179.77098 * 7 6 5 28 28 H 0.96993 * 120.00510 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.3669 1.3853 0.0005 5 6 3.8035 2.7190 0.0010 6 6 5.1390 3.2055 -0.0036 7 6 5.4185 4.5260 0.0020 8 6 4.3768 5.4808 0.0020 9 6 4.6660 6.8529 0.0029 10 1 3.9502 7.5558 -0.3972 11 6 5.8837 7.3122 0.5233 12 7 6.5976 6.5374 1.2972 13 14 6.4867 9.0314 0.1107 14 1 5.9772 9.9909 1.1232 15 1 7.9716 9.0495 0.1148 16 1 5.9906 9.4206 -1.2338 17 6 2.9902 5.0112 0.0014 18 6 1.9067 5.9476 0.0008 19 7 1.0473 6.6904 0.0030 20 6 2.7370 3.6293 0.0014 21 16 1.2110 2.7518 0.0006 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 4.0578 0.5552 0.0005 26 1 5.9545 2.4974 -0.0077 27 1 6.4469 4.8556 0.0020 28 1 7.4405 6.8550 1.6570 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396197293.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:37 Heat of formation + Delta-G solvation = 21.610086 kcal Electronic energy + Delta-G solvation = -15793.020002 eV Core-core repulsion = 13093.419096 eV Total energy + Delta-G solvation = -2699.600905 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.72275 -37.98030 -35.43218 -34.93745 -32.75409 -30.14415 -29.04608 -27.13725 -25.00440 -23.05321 -21.95836 -20.17567 -18.66124 -17.53161 -16.56582 -15.84600 -15.48114 -15.33902 -15.01623 -14.02004 -13.62479 -13.29151 -13.06302 -12.66654 -12.16008 -12.09673 -11.93162 -11.83864 -11.73335 -11.38674 -11.27111 -11.07633 -10.90511 -10.42980 -10.21378 -9.89397 -9.76826 -9.29002 -8.52275 -7.46591 -7.41864 -6.91761 -4.85664 1.74792 2.03626 2.09372 2.53685 2.70555 2.80669 2.86809 3.20994 3.53854 3.67293 3.87994 4.12932 4.31470 5.21511 5.24576 5.29068 5.33459 5.54376 5.91440 6.16298 6.27729 6.46401 6.49483 6.59308 6.75423 6.93559 7.23235 7.39114 7.49803 7.59095 7.62762 7.97735 8.17038 8.32824 8.78160 9.48544 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.035319 B = 0.005963 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.584361 B = 4694.655215 C = 5404.950753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.291 6.291 3 C -0.040 4.040 4 C -0.117 4.117 5 C -0.177 4.177 6 C -0.049 4.049 7 C -0.138 4.138 8 C 0.165 3.835 9 C -0.401 4.401 10 H 0.093 0.907 11 C 0.072 3.928 12 N -0.747 5.747 13 Si 0.921 3.079 14 H -0.262 1.262 15 H -0.268 1.268 16 H -0.253 1.253 17 C -0.179 4.179 18 C 0.297 3.703 19 N -0.504 5.504 20 C -0.020 4.020 21 S 0.006 5.994 22 H 0.098 0.902 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.131 0.869 26 H 0.103 0.897 27 H 0.132 0.868 28 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.065 -6.070 -1.343 6.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.206 6.206 3 C -0.197 4.197 4 C -0.146 4.146 5 C -0.183 4.183 6 C -0.070 4.070 7 C -0.158 4.158 8 C 0.157 3.843 9 C -0.428 4.428 10 H 0.111 0.889 11 C -0.153 4.153 12 N -0.368 5.368 13 Si 0.743 3.257 14 H -0.186 1.186 15 H -0.192 1.192 16 H -0.176 1.176 17 C -0.193 4.193 18 C -0.013 4.013 19 N -0.184 5.184 20 C -0.137 4.137 21 S 0.264 5.736 22 H 0.116 0.884 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.149 0.851 26 H 0.121 0.879 27 H 0.150 0.850 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.583 -4.828 -1.178 5.600 hybrid contribution 1.795 0.050 0.002 1.796 sum -0.788 -4.777 -1.176 4.983 Atomic orbital electron populations 1.23045 0.78997 1.03475 1.01539 1.85792 1.20206 1.23652 1.90974 1.22410 0.94617 0.87017 1.15704 1.19202 0.92042 0.96718 1.06681 1.17230 0.93336 0.89954 1.17783 1.20314 0.92998 0.95590 0.98129 1.20857 0.99576 0.91414 1.03916 1.18322 0.87711 0.93082 0.85203 1.19839 1.00609 0.93118 1.29203 0.88917 1.26244 0.95389 1.01376 0.92328 1.69727 1.11608 1.37703 1.17765 0.86046 0.78647 0.79946 0.81051 1.18632 1.19199 1.17608 1.15895 0.88588 0.85625 1.29177 1.25595 0.91970 0.92352 0.91351 1.81012 1.11704 1.10046 1.15639 1.21865 0.93210 0.95322 1.03341 1.84000 1.09640 0.97487 1.82433 0.88353 0.92861 0.92881 0.85110 0.87886 0.85011 0.89207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.24 101.05 1.03 1.36 15 2 O -0.29 -4.89 10.55 -18.22 -0.19 -5.09 15 3 C -0.04 -0.76 7.16 29.06 0.21 -0.55 15 4 C -0.12 -2.25 10.15 -40.46 -0.41 -2.67 15 5 C -0.18 -3.74 5.87 -106.87 -0.63 -4.36 15 6 C -0.05 -1.00 9.91 -39.25 -0.39 -1.39 15 7 C -0.14 -3.02 8.58 -39.57 -0.34 -3.35 15 8 C 0.17 3.89 5.72 -104.70 -0.60 3.29 15 9 C -0.40 -9.31 8.54 -38.11 -0.33 -9.63 15 10 H 0.09 2.17 7.38 -52.49 -0.39 1.79 15 11 C 0.07 1.52 5.15 -17.30 -0.09 1.43 15 12 N -0.75 -15.87 10.97 55.56 0.61 -15.26 15 13 Si 0.92 15.97 29.59 -169.99 -5.03 10.94 15 14 H -0.26 -4.60 7.11 56.52 0.40 -4.20 15 15 H -0.27 -4.41 7.11 56.52 0.40 -4.01 15 16 H -0.25 -4.44 7.11 56.52 0.40 -4.04 15 17 C -0.18 -4.26 5.97 -103.84 -0.62 -4.88 15 18 C 0.30 7.19 14.03 -22.47 -0.32 6.87 15 19 N -0.50 -12.41 18.54 41.84 0.78 -11.63 15 20 C -0.02 -0.44 6.33 -37.99 -0.24 -0.68 15 21 S 0.01 0.12 21.66 -107.50 -2.33 -2.20 15 22 H 0.10 0.91 8.14 -51.93 -0.42 0.48 15 23 H 0.05 0.65 8.03 -51.93 -0.42 0.24 15 24 H 0.05 0.65 8.03 -51.93 -0.42 0.23 15 25 H 0.13 2.23 8.06 -52.49 -0.42 1.81 15 26 H 0.10 1.78 8.06 -52.48 -0.42 1.36 15 27 H 0.13 2.81 6.20 -52.49 -0.33 2.49 15 28 H 0.30 5.56 8.29 -40.82 -0.34 5.22 15 LS Contribution 272.47 15.07 4.11 4.11 Total: -1.00 -25.62 272.47 -6.72 -32.34 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -1.95 Total: 1.37 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -2.71 Total: -14.57 kcal Atomic # 7 Polarization: -28.28 SS G_CDS: 1.38 Total: -26.90 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.19 Total: -5.09 kcal Atomic # 14 Polarization: 15.97 SS G_CDS: -5.03 Total: 10.94 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -2.33 Total: -2.20 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -25.62 -6.72 -32.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396197293.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.952 kcal (2) G-P(sol) polarization free energy of solvation -25.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds