Wall clock time and date at job start Mon Mar 30 2020 06:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35508 * 116.99893 * 2 1 4 4 C 1.33468 * 124.65773 * 179.97438 * 3 2 1 5 5 C 1.40335 * 115.78394 * 180.02562 * 4 3 2 6 6 C 1.42137 * 128.14069 * 180.26444 * 5 4 3 7 7 C 1.34975 * 121.96535 * 180.22947 * 6 5 4 8 8 C 1.41315 * 120.55571 * 359.48953 * 7 6 5 9 9 C 1.40226 * 120.60499 * 180.23771 * 8 7 6 10 10 H 1.08002 * 119.99691 * 154.67200 * 9 8 7 11 11 C 1.40166 * 120.00040 * 334.65837 * 9 8 7 12 12 N 1.30723 * 120.00401 * 342.94790 * 11 9 8 13 13 Si 1.86804 * 119.99761 * 162.93738 * 11 9 8 14 14 H 1.48501 * 109.47062 * 90.00765 * 13 11 9 15 15 H 1.48503 * 109.47268 * 210.00585 * 13 11 9 16 16 H 1.48498 * 109.47419 * 330.00723 * 13 11 9 17 17 C 1.46393 * 118.78268 * 0.25234 * 8 7 6 18 18 C 1.43205 * 120.45648 * 180.02562 * 17 8 7 19 19 N 6.70129 * 86.73448 * 0.02562 * 2 1 3 20 20 C 1.40217 * 112.35903 * 0.02562 * 5 4 3 21 21 S 1.75479 * 124.65644 * 0.02562 * 3 2 1 22 22 H 1.09000 * 109.46447 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47606 * 300.00151 * 1 2 3 24 24 H 1.08999 * 109.46836 * 60.00653 * 1 2 3 25 25 H 1.07998 * 122.11347 * 0.02562 * 4 3 2 26 26 H 1.08004 * 119.01566 * 359.97438 * 6 5 4 27 27 H 1.07997 * 119.72398 * 179.77098 * 7 6 5 28 28 H 0.96993 * 120.00510 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.3669 1.3853 0.0005 5 6 3.8035 2.7190 0.0010 6 6 5.1390 3.2055 -0.0036 7 6 5.4185 4.5260 0.0020 8 6 4.3768 5.4808 0.0020 9 6 4.6660 6.8529 0.0029 10 1 3.9502 7.5558 -0.3972 11 6 5.8837 7.3122 0.5233 12 7 6.5976 6.5374 1.2972 13 14 6.4867 9.0314 0.1107 14 1 5.9772 9.9909 1.1232 15 1 7.9716 9.0495 0.1148 16 1 5.9906 9.4206 -1.2338 17 6 2.9902 5.0112 0.0014 18 6 1.9067 5.9476 0.0008 19 7 1.0473 6.6904 0.0030 20 6 2.7370 3.6293 0.0014 21 16 1.2110 2.7518 0.0006 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 4.0578 0.5552 0.0005 26 1 5.9545 2.4974 -0.0077 27 1 6.4469 4.8556 0.0020 28 1 7.4405 6.8550 1.6570 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396197293.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:36 Heat of formation + Delta-G solvation = 9.188958 kcal Electronic energy + Delta-G solvation = -15793.558622 eV Core-core repulsion = 13093.419096 eV Total energy + Delta-G solvation = -2700.139526 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.21451 -39.47218 -37.20839 -36.62123 -34.34981 -31.82894 -30.62293 -28.38950 -26.52242 -24.71099 -23.58199 -21.73649 -20.25879 -19.11304 -18.13488 -17.46309 -16.77274 -16.72591 -16.48757 -15.64131 -15.17156 -14.82539 -14.79320 -14.20342 -13.78117 -13.69005 -13.52666 -13.48093 -13.06956 -12.97961 -12.82170 -12.47827 -12.36525 -11.94833 -11.79572 -11.45088 -11.36073 -10.86888 -10.15233 -9.06933 -9.03280 -8.52093 -6.57795 0.15605 0.36496 0.48256 0.94782 1.26848 1.38191 1.51448 1.68222 1.99634 2.11327 2.39993 2.42861 2.56635 3.48298 3.58165 4.30354 4.30631 4.32790 4.61462 4.67371 4.72268 4.83306 4.89097 5.01079 5.11167 5.30841 5.65608 5.72081 5.87656 5.93871 6.17654 6.28623 6.47521 6.64055 6.92158 7.93137 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.035319 B = 0.005963 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.584361 B = 4694.655215 C = 5404.950753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.295 6.295 3 C -0.024 4.024 4 C -0.133 4.133 5 C -0.175 4.175 6 C -0.044 4.044 7 C -0.148 4.148 8 C 0.145 3.855 9 C -0.429 4.429 10 H 0.078 0.922 11 C 0.045 3.955 12 N -0.764 5.764 13 Si 0.984 3.016 14 H -0.264 1.264 15 H -0.247 1.247 16 H -0.260 1.260 17 C -0.211 4.211 18 C 0.299 3.701 19 N -0.527 5.527 20 C -0.049 4.049 21 S 0.017 5.983 22 H 0.137 0.863 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.157 0.843 26 H 0.137 0.863 27 H 0.134 0.866 28 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.652 -7.459 -1.315 7.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.210 6.210 3 C -0.182 4.182 4 C -0.162 4.162 5 C -0.182 4.182 6 C -0.065 4.065 7 C -0.167 4.167 8 C 0.137 3.863 9 C -0.455 4.455 10 H 0.096 0.904 11 C -0.179 4.179 12 N -0.385 5.385 13 Si 0.803 3.197 14 H -0.189 1.189 15 H -0.170 1.170 16 H -0.183 1.183 17 C -0.224 4.224 18 C -0.009 4.009 19 N -0.208 5.208 20 C -0.166 4.166 21 S 0.275 5.725 22 H 0.155 0.845 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.175 0.825 26 H 0.155 0.845 27 H 0.152 0.848 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.875 -6.241 -1.144 6.616 hybrid contribution 1.482 0.277 0.014 1.508 sum -0.393 -5.964 -1.130 6.083 Atomic orbital electron populations 1.23422 0.76579 1.06221 1.01797 1.85806 1.22556 1.22179 1.90484 1.22588 0.94687 0.87333 1.13583 1.19371 0.92790 0.96557 1.07515 1.17581 0.93435 0.90716 1.16485 1.20638 0.93797 0.95644 0.96409 1.20906 0.99189 0.91892 1.04729 1.18625 0.88223 0.93818 0.85602 1.19953 1.01832 0.93046 1.30639 0.90421 1.26877 0.94706 1.04624 0.91723 1.69695 1.12158 1.39163 1.17471 0.85145 0.79130 0.75397 0.80073 1.18911 1.16983 1.18343 1.16075 0.88580 0.86319 1.31437 1.25857 0.91906 0.92189 0.90925 1.80971 1.12291 1.10475 1.17075 1.22113 0.95022 0.95273 1.04212 1.83891 1.08654 0.97937 1.82004 0.84489 0.92632 0.92546 0.82545 0.84527 0.84794 0.87818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.24 113.37 1.16 1.50 15 2 O -0.30 -9.04 10.55 -88.10 -0.93 -9.97 15 3 C -0.02 -0.85 7.16 66.74 0.48 -0.37 15 4 C -0.13 -4.84 10.15 21.70 0.22 -4.62 15 5 C -0.18 -7.22 5.87 -21.32 -0.13 -7.35 15 6 C -0.04 -1.74 9.91 22.49 0.22 -1.52 15 7 C -0.15 -6.44 8.58 22.28 0.19 -6.25 15 8 C 0.15 7.03 5.72 -19.92 -0.11 6.91 15 9 C -0.43 -20.46 8.54 23.22 0.20 -20.26 15 10 H 0.08 3.82 7.38 -2.91 -0.02 3.80 15 11 C 0.04 1.89 5.15 85.33 0.44 2.33 15 12 N -0.76 -32.07 10.97 21.87 0.24 -31.83 15 13 Si 0.98 32.29 29.59 68.60 2.03 34.32 15 14 H -0.26 -8.75 7.11 99.48 0.71 -8.04 15 15 H -0.25 -7.23 7.11 99.48 0.71 -6.52 15 16 H -0.26 -8.74 7.11 99.48 0.71 -8.03 15 17 C -0.21 -10.29 5.97 -19.36 -0.12 -10.40 15 18 C 0.30 14.99 14.03 88.33 1.24 16.23 15 19 N -0.53 -26.75 18.54 19.00 0.35 -26.40 15 20 C -0.05 -2.18 6.33 23.30 0.15 -2.03 15 21 S 0.02 0.66 21.66 -56.49 -1.22 -0.57 15 22 H 0.14 1.97 8.14 -2.39 -0.02 1.95 15 23 H 0.06 1.22 8.03 -2.39 -0.02 1.20 15 24 H 0.06 1.23 8.03 -2.39 -0.02 1.21 15 25 H 0.16 4.82 8.06 -2.91 -0.02 4.80 15 26 H 0.14 4.36 8.06 -2.91 -0.02 4.34 15 27 H 0.13 5.69 6.20 -2.91 -0.02 5.67 15 28 H 0.31 11.24 8.29 -92.71 -0.77 10.48 15 Total: -1.00 -55.07 272.47 5.62 -49.45 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 1.21 Total: 10.85 kcal Atomic # 6 Polarization: -29.78 SS G_CDS: 3.94 Total: -25.84 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 0.59 Total: -58.23 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -0.93 Total: -9.97 kcal Atomic # 14 Polarization: 32.29 SS G_CDS: 2.03 Total: 34.32 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -1.22 Total: -0.57 kcal Total: -55.07 5.62 -49.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396197293.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.634 kcal (2) G-P(sol) polarization free energy of solvation -55.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds