Wall clock time and date at job start Mon Mar 30 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35744 * 116.99782 * 2 1 4 4 C 1.37872 * 120.05183 * 0.27995 * 3 2 1 5 5 C 1.39875 * 120.55043 * 180.27576 * 4 3 2 6 6 S 1.75853 * 129.97718 * 179.72575 * 5 4 3 7 7 C 1.69950 * 93.26846 * 179.97438 * 6 5 4 8 8 C 1.36389 * 112.04019 * 0.02562 * 7 6 5 9 9 C 1.40750 * 123.29128 * 179.97438 * 8 7 6 10 10 H 1.08003 * 120.00118 * 159.10790 * 9 8 7 11 11 C 1.39735 * 119.99839 * 339.12102 * 9 8 7 12 12 N 1.31056 * 119.99955 * 344.88443 * 11 9 8 13 13 Si 1.86799 * 119.99859 * 164.88580 * 11 9 8 14 14 H 1.48507 * 109.47065 * 59.99738 * 13 11 9 15 15 H 1.48501 * 109.47299 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47565 * 299.99965 * 13 11 9 17 17 C 1.39698 * 119.90647 * 359.70267 * 5 4 3 18 18 C 1.40094 * 119.52575 * 0.02562 * 17 5 4 19 19 C 1.39031 * 120.27839 * 359.97438 * 18 17 5 20 20 C 1.43201 * 120.07833 * 179.97438 * 19 18 17 21 21 N 3.53152 * 165.80357 * 180.02562 * 2 1 3 22 22 H 1.09001 * 109.46887 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46800 * 299.99603 * 1 2 3 24 24 H 1.08997 * 109.47070 * 59.99932 * 1 2 3 25 25 H 1.08004 * 119.72471 * 359.97438 * 4 3 2 26 26 H 1.07999 * 123.97752 * 179.97438 * 7 6 5 27 27 H 0.97003 * 119.99844 * 180.02562 * 12 11 9 28 28 H 1.07996 * 119.85690 * 180.02562 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.2953 2.3664 0.0058 5 6 1.9194 3.6182 0.0001 6 16 1.2175 5.2306 -0.0011 7 6 2.7345 5.9967 -0.0085 8 6 3.7612 5.0989 -0.0108 9 6 5.1172 5.4760 -0.0173 10 1 5.8731 4.7796 0.3146 11 6 5.4855 6.7516 -0.4531 12 7 4.6332 7.4859 -1.1252 13 14 7.1928 7.4100 -0.0776 14 1 8.2124 6.5158 -0.6828 15 1 7.3329 8.7751 -0.6453 16 1 7.3909 7.4624 1.3932 17 6 3.3139 3.7013 -0.0054 18 6 4.0755 2.5255 -0.0056 19 6 3.4489 1.2844 0.0002 20 6 4.2317 0.0852 -0.0006 21 7 4.8526 -0.8661 -0.0004 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.2170 2.3057 0.0100 26 1 2.8695 7.0682 -0.0120 27 1 4.8890 8.3713 -1.4281 28 1 5.1539 2.5835 -0.0094 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396197341.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:03 Heat of formation + Delta-G solvation = 8.019434 kcal Electronic energy + Delta-G solvation = -15860.820416 eV Core-core repulsion = 13160.630176 eV Total energy + Delta-G solvation = -2700.190240 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.23653 -39.02429 -37.65454 -36.25026 -33.88613 -32.16212 -29.89158 -28.35833 -27.62674 -24.92967 -23.32470 -21.96212 -19.88746 -19.00116 -18.09373 -17.79391 -16.96243 -16.73091 -16.44010 -15.36944 -15.13786 -14.87885 -14.63833 -14.46085 -14.05958 -13.87971 -13.59506 -13.34172 -13.18886 -12.79104 -12.56238 -12.51194 -12.37306 -12.12076 -11.70483 -11.28031 -11.17492 -10.93174 -10.23968 -8.94795 -8.60617 -8.46099 -6.25306 -0.25360 0.17853 1.03802 1.31868 1.41834 1.51568 1.65815 1.71586 1.94130 2.12821 2.24287 2.27476 2.80878 2.91535 3.38020 3.84598 4.15945 4.29447 4.46738 4.46961 4.49787 4.67730 4.81843 4.92768 5.15267 5.25644 5.26491 5.51966 5.77596 6.00653 6.30249 6.51230 6.53936 6.84898 6.96626 8.39247 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.023203 B = 0.006759 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.433881 B = 4141.872041 C = 5280.284260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.325 6.325 3 C 0.181 3.819 4 C -0.181 4.181 5 C -0.091 4.091 6 S 0.110 5.890 7 C -0.405 4.405 8 C 0.071 3.929 9 C -0.468 4.468 10 H 0.081 0.919 11 C 0.031 3.969 12 N -0.824 5.824 13 Si 0.979 3.021 14 H -0.260 1.260 15 H -0.272 1.272 16 H -0.262 1.262 17 C -0.129 4.129 18 C 0.020 3.980 19 C -0.089 4.089 20 C 0.295 3.705 21 N -0.466 5.466 22 H 0.123 0.877 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.165 0.835 26 H 0.136 0.864 27 H 0.284 0.716 28 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.688 -6.107 1.721 9.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.238 6.238 3 C 0.130 3.870 4 C -0.206 4.206 5 C -0.209 4.209 6 S 0.374 5.626 7 C -0.541 4.541 8 C 0.063 3.937 9 C -0.500 4.500 10 H 0.099 0.901 11 C -0.183 4.183 12 N -0.450 5.450 13 Si 0.800 3.200 14 H -0.184 1.184 15 H -0.197 1.197 16 H -0.186 1.186 17 C -0.139 4.139 18 C -0.003 4.003 19 C -0.097 4.097 20 C -0.019 4.019 21 N -0.143 5.143 22 H 0.141 0.859 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.183 0.817 26 H 0.154 0.846 27 H 0.095 0.905 28 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.113 -6.834 1.594 10.727 hybrid contribution 1.891 0.846 -0.059 2.073 sum -6.222 -5.988 1.535 8.770 Atomic orbital electron populations 1.23488 0.75574 1.05975 1.03040 1.86052 1.24279 1.25566 1.87952 1.18348 0.89557 0.84847 0.94258 1.20427 1.00781 0.87942 1.11475 1.22977 0.96610 0.98807 1.02500 1.81491 1.09409 0.92932 1.78744 1.24197 0.94599 1.02693 1.32594 1.17598 0.94704 0.87734 0.93700 1.19295 0.92490 0.99390 1.38817 0.90062 1.26622 1.03055 0.96559 0.92070 1.69938 1.38122 1.10577 1.26376 0.85287 0.77269 0.77808 0.79619 1.18422 1.19709 1.18637 1.19501 0.92690 0.94188 1.07523 1.20732 1.00048 0.88100 0.91380 1.14913 0.88856 0.87130 1.18792 1.25344 0.92241 0.92238 0.92036 1.81140 1.10015 1.11248 1.11901 0.85899 0.90961 0.91095 0.81746 0.84601 0.90540 0.84170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.32 15 2 O -0.33 -8.55 9.92 -90.68 -0.90 -9.45 15 3 C 0.18 5.52 6.68 22.75 0.15 5.68 15 4 C -0.18 -5.44 9.06 22.58 0.20 -5.24 15 5 C -0.09 -3.49 6.44 23.02 0.15 -3.34 15 6 S 0.11 4.31 22.96 -56.49 -1.30 3.02 15 7 C -0.41 -20.18 9.51 67.39 0.64 -19.54 15 8 C 0.07 3.58 5.69 -20.87 -0.12 3.46 15 9 C -0.47 -23.84 9.05 23.25 0.21 -23.63 15 10 H 0.08 3.90 7.64 -2.91 -0.02 3.87 15 11 C 0.03 1.54 5.31 85.17 0.45 1.99 15 12 N -0.82 -42.30 10.90 21.80 0.24 -42.06 15 13 Si 0.98 37.56 29.59 68.60 2.03 39.59 15 14 H -0.26 -9.65 7.11 99.48 0.71 -8.95 15 15 H -0.27 -10.06 7.11 99.48 0.71 -9.35 15 16 H -0.26 -9.87 7.11 99.48 0.71 -9.16 15 17 C -0.13 -5.59 6.02 -20.25 -0.12 -5.71 15 18 C 0.02 0.75 9.54 22.91 0.22 0.97 15 19 C -0.09 -3.01 5.74 -21.27 -0.12 -3.13 15 20 C 0.30 10.23 14.86 88.33 1.31 11.54 15 21 N -0.47 -17.16 18.54 19.00 0.35 -16.80 15 22 H 0.12 1.33 8.14 -2.39 -0.02 1.31 15 23 H 0.07 0.97 7.64 -2.39 -0.02 0.95 15 24 H 0.07 0.97 7.66 -2.39 -0.02 0.96 15 25 H 0.17 3.71 6.24 -2.91 -0.02 3.69 15 26 H 0.14 7.39 6.31 -2.91 -0.02 7.37 15 27 H 0.28 13.36 8.30 -92.71 -0.77 12.60 15 28 H 0.14 5.05 7.81 -2.91 -0.02 5.02 15 Total: -1.00 -58.77 270.66 5.72 -53.04 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 1.21 Total: 8.31 kcal Atomic # 6 Polarization: -39.73 SS G_CDS: 4.09 Total: -35.64 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: 0.59 Total: -58.87 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.90 Total: -9.45 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Atomic # 16 Polarization: 4.31 SS G_CDS: -1.30 Total: 3.02 kcal Total: -58.77 5.72 -53.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396197341.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.061 kcal (2) G-P(sol) polarization free energy of solvation -58.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds