Wall clock time and date at job start Mon Mar 30 2020 06:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35861 * 117.00206 * 2 1 4 4 C 1.38674 * 119.48988 * 0.02562 * 3 2 1 5 5 C 1.39592 * 121.46172 * 180.25522 * 4 3 2 6 6 S 1.76072 * 130.31035 * 180.30426 * 5 4 3 7 7 C 1.75490 * 91.62729 * 179.53323 * 6 5 4 8 8 C 1.43197 * 124.81909 * 179.79301 * 7 6 5 9 9 N 8.70850 * 101.00103 * 0.02562 * 2 1 3 10 10 C 1.35633 * 110.36216 * 359.80622 * 7 6 5 11 11 C 1.39215 * 115.36812 * 0.02562 * 10 7 6 12 12 C 1.48140 * 128.89632 * 179.97438 * 11 10 7 13 13 C 1.40414 * 120.36271 * 0.02562 * 12 11 10 14 14 H 1.07999 * 119.99838 * 24.89283 * 13 12 11 15 15 C 1.40108 * 120.00020 * 204.89067 * 13 12 11 16 16 N 1.30758 * 120.00121 * 17.80233 * 15 13 12 17 17 Si 1.86799 * 120.00224 * 197.80174 * 15 13 12 18 18 H 1.48500 * 109.47141 * 59.99660 * 17 15 13 19 19 H 1.48496 * 109.47385 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46973 * 300.00108 * 17 15 13 21 21 C 1.38134 * 119.49262 * 179.97438 * 3 2 1 22 22 H 1.09000 * 109.47045 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46669 * 299.99608 * 1 2 3 24 24 H 1.09000 * 109.47232 * 59.99868 * 1 2 3 25 25 H 1.07998 * 119.26534 * 359.97438 * 4 3 2 26 26 H 1.07998 * 122.31262 * 179.97438 * 10 7 6 27 27 H 0.96996 * 120.00176 * 180.02562 * 16 15 13 28 28 H 1.07996 * 119.94949 * 0.05219 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 6 1.2803 2.3668 0.0005 5 6 1.8709 3.6316 -0.0047 6 16 1.1363 5.2317 0.0018 7 6 2.7097 6.0089 0.0020 8 6 2.9222 7.4250 0.0023 9 7 3.0908 8.5485 0.0038 10 6 3.6960 5.0778 0.0017 11 6 3.2662 3.7537 0.0007 12 6 4.0756 2.5129 -0.0005 13 6 5.4781 2.5805 -0.0001 14 1 5.9765 3.4535 0.3947 15 6 6.2309 1.5153 -0.5117 16 7 5.6662 0.6310 -1.2921 17 14 8.0413 1.3584 -0.0792 18 1 8.1891 1.2277 1.3927 19 1 8.6064 0.1560 -0.7426 20 1 8.7679 2.5672 -0.5442 21 6 3.4259 1.2705 0.0005 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 0.2032 2.2869 0.0005 26 1 4.7423 5.3452 0.0013 27 1 6.1872 -0.1066 -1.6460 28 1 4.0052 0.3591 0.0001 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396198008.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:29 Heat of formation + Delta-G solvation = 8.173694 kcal Electronic energy + Delta-G solvation = -15868.411627 eV Core-core repulsion = 13168.228076 eV Total energy + Delta-G solvation = -2700.183551 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.61474 -38.93841 -37.62415 -36.22570 -34.51524 -31.77451 -30.24709 -28.08648 -27.12798 -24.87890 -23.38579 -21.43194 -20.27643 -19.07097 -18.08693 -16.94813 -16.82744 -16.44377 -16.38250 -16.19855 -15.04760 -14.86814 -14.64546 -14.35011 -13.91967 -13.81839 -13.58190 -13.40610 -13.03241 -12.81531 -12.68829 -12.41942 -12.26118 -11.97570 -11.87064 -11.29814 -11.27051 -10.76858 -10.16095 -8.96535 -8.82597 -8.44198 -6.49617 -0.32098 0.52353 0.82262 1.08844 1.37608 1.42458 1.54427 1.57949 2.01293 2.14309 2.37949 2.54904 2.70268 3.12741 3.48838 4.27301 4.44076 4.50000 4.51283 4.63061 4.74518 4.80243 4.95876 5.00117 5.17636 5.35259 5.50878 5.73128 5.85750 5.90478 6.24982 6.50454 6.59079 6.66944 6.89498 8.02661 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.013964 B = 0.008960 C = 0.005551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.735960 B = 3124.404036 C = 5042.609246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.340 6.340 3 C 0.187 3.813 4 C -0.316 4.316 5 C -0.040 4.040 6 S 0.120 5.880 7 C -0.247 4.247 8 C 0.319 3.681 9 N -0.476 5.476 10 C 0.027 3.973 11 C -0.240 4.240 12 C 0.157 3.843 13 C -0.427 4.427 14 H 0.103 0.897 15 C 0.037 3.963 16 N -0.773 5.773 17 Si 0.989 3.011 18 H -0.255 1.255 19 H -0.265 1.265 20 H -0.254 1.254 21 C -0.256 4.256 22 H 0.119 0.881 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.129 0.871 26 H 0.145 0.855 27 H 0.303 0.697 28 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.192 -3.167 1.533 4.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.253 6.253 3 C 0.138 3.862 4 C -0.344 4.344 5 C -0.156 4.156 6 S 0.383 5.617 7 C -0.365 4.365 8 C 0.006 3.994 9 N -0.155 5.155 10 C -0.006 4.006 11 C -0.245 4.245 12 C 0.151 3.849 13 C -0.453 4.453 14 H 0.121 0.879 15 C -0.186 4.186 16 N -0.394 5.394 17 Si 0.808 3.192 18 H -0.179 1.179 19 H -0.189 1.189 20 H -0.178 1.178 21 C -0.279 4.279 22 H 0.137 0.863 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.147 0.853 26 H 0.163 0.837 27 H 0.114 0.886 28 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.298 -1.171 1.366 4.659 hybrid contribution 1.696 -1.075 -0.076 2.010 sum -2.602 -2.246 1.290 3.671 Atomic orbital electron populations 1.23228 0.77301 1.04889 1.01785 1.86019 1.23032 1.27667 1.88625 1.18723 0.91929 0.83384 0.92133 1.19776 0.98783 0.89204 1.26614 1.22500 0.96069 0.96979 1.00071 1.83206 1.03941 0.94200 1.80394 1.18965 0.98331 0.87751 1.31421 1.24411 0.92647 0.90981 0.91328 1.81181 1.08511 1.11746 1.14111 1.20148 0.99351 0.90080 0.91072 1.19030 0.92167 0.93235 1.20095 1.18411 0.92778 0.88414 0.85309 1.20109 0.91316 1.03312 1.30531 0.87871 1.27047 1.06574 0.93210 0.91786 1.69829 1.41380 1.09902 1.18263 0.85106 0.74445 0.79499 0.80131 1.17925 1.18927 1.17769 1.20241 0.90481 0.98152 1.18976 0.86271 0.92182 0.92535 0.85326 0.83716 0.88581 0.86686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.79 113.37 1.11 1.70 15 2 O -0.34 -13.13 10.48 -91.98 -0.96 -14.10 15 3 C 0.19 8.16 6.65 22.35 0.15 8.31 15 4 C -0.32 -12.77 9.03 22.70 0.20 -12.56 15 5 C -0.04 -1.64 6.47 23.04 0.15 -1.49 15 6 S 0.12 4.21 23.23 -56.49 -1.31 2.90 15 7 C -0.25 -9.20 6.24 22.91 0.14 -9.06 15 8 C 0.32 11.81 15.78 88.33 1.39 13.21 15 9 N -0.48 -18.35 18.54 19.00 0.35 -18.00 15 10 C 0.03 1.08 9.67 21.90 0.21 1.29 15 11 C -0.24 -10.63 6.01 -19.97 -0.12 -10.75 15 12 C 0.16 7.48 5.75 -19.64 -0.11 7.37 15 13 C -0.43 -19.30 8.80 23.25 0.20 -19.09 15 14 H 0.10 4.30 7.48 -2.91 -0.02 4.28 15 15 C 0.04 1.55 5.13 85.31 0.44 1.99 15 16 N -0.77 -34.66 10.98 21.86 0.24 -34.42 15 17 Si 0.99 31.66 29.60 68.60 2.03 33.69 15 18 H -0.26 -8.07 7.11 99.48 0.71 -7.37 15 19 H -0.27 -8.09 7.11 99.48 0.71 -7.39 15 20 H -0.25 -7.88 7.11 99.48 0.71 -7.18 15 21 C -0.26 -12.36 8.58 22.72 0.19 -12.17 15 22 H 0.12 2.34 8.14 -2.39 -0.02 2.32 15 23 H 0.06 1.46 7.62 -2.39 -0.02 1.44 15 24 H 0.06 1.41 7.62 -2.39 -0.02 1.40 15 25 H 0.13 4.42 6.14 -2.91 -0.02 4.40 15 26 H 0.15 5.26 7.68 -2.91 -0.02 5.24 15 27 H 0.30 12.08 8.29 -92.71 -0.77 11.31 15 28 H 0.12 5.82 6.16 -2.91 -0.02 5.81 15 Total: -1.00 -52.45 271.20 5.53 -46.92 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 1.22 Total: 14.25 kcal Atomic # 6 Polarization: -35.22 SS G_CDS: 3.97 Total: -31.25 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: 0.59 Total: -52.42 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.96 Total: -14.10 kcal Atomic # 14 Polarization: 31.66 SS G_CDS: 2.03 Total: 33.69 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -1.31 Total: 2.90 kcal Total: -52.45 5.53 -46.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396198008.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.099 kcal (2) G-P(sol) polarization free energy of solvation -52.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds