Wall clock time and date at job start Mon Mar 30 2020 06:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35612 * 117.00003 * 2 1 4 4 C 1.32874 * 124.59862 * 179.97438 * 3 2 1 5 5 C 1.40511 * 115.71591 * 180.02562 * 4 3 2 6 6 C 1.40208 * 112.54426 * 359.97438 * 5 4 3 7 7 C 1.40223 * 120.43781 * 179.97438 * 6 5 4 8 8 C 1.35858 * 121.25717 * 359.97438 * 7 6 5 9 9 C 1.40943 * 120.25661 * 0.02562 * 8 7 6 10 10 C 1.40566 * 120.14673 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00230 * 154.06996 * 10 9 8 12 12 C 1.40241 * 120.00123 * 334.07704 * 10 9 8 13 13 N 1.30681 * 119.99772 * 342.96856 * 12 10 9 14 14 Si 1.86794 * 119.99948 * 162.97266 * 12 10 9 15 15 H 1.48493 * 109.47386 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47383 * 119.99925 * 14 12 10 17 17 H 1.48504 * 109.46899 * 239.99462 * 14 12 10 18 18 C 1.41587 * 119.70777 * 359.97438 * 9 8 7 19 19 C 1.43203 * 120.18510 * 180.02562 * 18 9 8 20 20 N 5.91183 * 164.31575 * 0.02704 * 2 1 3 21 21 S 1.75456 * 124.59644 * 0.02562 * 3 2 1 22 22 H 1.08998 * 109.46923 * 59.99991 * 1 2 3 23 23 H 1.08997 * 109.46702 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47017 * 299.99706 * 1 2 3 25 25 H 1.08006 * 122.14376 * 359.75489 * 4 3 2 26 26 H 1.08003 * 119.36498 * 179.97438 * 7 6 5 27 27 H 1.08005 * 119.86575 * 180.02562 * 8 7 6 28 28 H 0.97000 * 119.99384 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0448 1.2083 0.0000 4 6 3.3618 1.3840 0.0005 5 6 3.7988 2.7195 0.0010 6 6 2.7352 3.6330 0.0002 7 6 2.9841 5.0130 0.0011 8 6 4.2521 5.5006 0.0032 9 6 5.3519 4.6192 0.0040 10 6 6.6630 5.1262 0.0056 11 1 7.4696 4.5363 0.4151 12 6 6.9236 6.3982 -0.5245 13 7 6.0482 6.9717 -1.3073 14 14 8.5219 7.2724 -0.1119 15 1 9.3364 6.4165 0.7875 16 1 9.2781 7.5378 -1.3621 17 1 8.2215 8.5585 0.5672 18 6 5.1304 3.2208 0.0031 19 6 6.2403 2.3159 0.0045 20 7 7.1208 1.5982 0.0008 21 16 1.2102 2.7517 0.0006 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 4.0523 0.5535 0.0048 26 1 2.1518 5.7013 0.0001 27 1 4.4180 6.5679 0.0042 28 1 6.2287 7.8512 -1.6742 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396198028.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:27 Heat of formation + Delta-G solvation = 22.501077 kcal Electronic energy + Delta-G solvation = -15835.184442 eV Core-core repulsion = 13135.622173 eV Total energy + Delta-G solvation = -2699.562269 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.00932 -38.20652 -35.17967 -34.98474 -32.97506 -30.39778 -28.68922 -26.83008 -25.67107 -22.69493 -22.22518 -20.19850 -18.68796 -17.45468 -16.77905 -15.83880 -15.68138 -15.17780 -14.84558 -14.36680 -13.61538 -13.20969 -13.07966 -12.76168 -12.18055 -12.12169 -11.93715 -11.78541 -11.64471 -11.36606 -11.27617 -11.12963 -10.82864 -10.39251 -10.16345 -9.85207 -9.83645 -9.27656 -8.58269 -7.44961 -7.28262 -6.90172 -4.81123 1.48115 1.86955 2.22258 2.55703 2.86885 2.89853 2.97012 3.24132 3.44001 3.66001 4.00055 4.05426 4.43229 5.10116 5.15160 5.34383 5.42021 5.43627 5.87261 6.01011 6.21697 6.31718 6.52765 6.69323 6.86678 7.06698 7.15445 7.28758 7.34639 7.55981 7.75575 8.08531 8.35895 8.41828 8.88863 9.67508 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.034684 B = 0.005933 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.103871 B = 4718.312743 C = 5441.633193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.288 6.288 3 C 0.032 3.968 4 C -0.176 4.176 5 C 0.041 3.959 6 C -0.231 4.231 7 C -0.056 4.056 8 C -0.118 4.118 9 C 0.156 3.844 10 C -0.426 4.426 11 H 0.089 0.911 12 C 0.076 3.924 13 N -0.763 5.763 14 Si 0.916 3.084 15 H -0.255 1.255 16 H -0.269 1.269 17 H -0.265 1.265 18 C -0.172 4.172 19 C 0.304 3.696 20 N -0.511 5.511 21 S 0.014 5.986 22 H 0.057 0.943 23 H 0.102 0.898 24 H 0.057 0.943 25 H 0.133 0.867 26 H 0.102 0.898 27 H 0.134 0.866 28 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.135 -0.878 1.475 9.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.202 6.202 3 C -0.127 4.127 4 C -0.207 4.207 5 C 0.033 3.967 6 C -0.346 4.346 7 C -0.078 4.078 8 C -0.139 4.139 9 C 0.150 3.850 10 C -0.454 4.454 11 H 0.108 0.892 12 C -0.147 4.147 13 N -0.385 5.385 14 Si 0.739 3.261 15 H -0.178 1.178 16 H -0.194 1.194 17 H -0.190 1.190 18 C -0.182 4.182 19 C -0.005 4.005 20 N -0.190 5.190 21 S 0.271 5.729 22 H 0.076 0.924 23 H 0.120 0.880 24 H 0.076 0.924 25 H 0.151 0.849 26 H 0.120 0.880 27 H 0.152 0.848 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.251 -1.603 1.312 9.481 hybrid contribution 1.410 0.422 -0.005 1.472 sum -7.841 -1.182 1.308 8.037 Atomic orbital electron populations 1.23149 0.78368 1.03985 1.01860 1.85908 1.20835 1.23654 1.89852 1.22687 0.94939 0.87675 1.07389 1.19321 0.92619 0.97448 1.11353 1.17250 0.92269 0.89768 0.97453 1.21577 0.92046 0.97063 1.23922 1.19820 0.96996 0.90913 1.00082 1.21015 0.90350 1.00225 1.02270 1.17244 0.93677 0.88446 0.85613 1.19824 0.94609 0.99616 1.31338 0.89247 1.26142 0.99484 0.96826 0.92240 1.69714 1.34997 1.14944 1.18884 0.86086 0.80615 0.79530 0.79858 1.17807 1.19356 1.19008 1.15593 0.84912 0.90117 1.27546 1.25600 0.92202 0.91534 0.91163 1.81003 1.11043 1.11566 1.15413 1.83575 1.10017 0.96425 1.82865 0.92442 0.87994 0.92448 0.84877 0.87991 0.84817 0.89692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.24 101.05 1.03 1.29 15 2 O -0.29 -4.64 10.56 -18.53 -0.20 -4.84 15 3 C 0.03 0.59 7.14 28.88 0.21 0.80 15 4 C -0.18 -3.62 9.71 -40.58 -0.39 -4.01 15 5 C 0.04 0.92 5.85 -106.75 -0.62 0.30 15 6 C -0.23 -4.79 6.51 -38.10 -0.25 -5.04 15 7 C -0.06 -1.13 9.96 -39.69 -0.40 -1.53 15 8 C -0.12 -2.60 8.59 -39.41 -0.34 -2.94 15 9 C 0.16 3.75 5.57 -106.72 -0.59 3.16 15 10 C -0.43 -10.24 8.44 -37.95 -0.32 -10.56 15 11 H 0.09 2.19 7.26 -52.49 -0.38 1.81 15 12 C 0.08 1.68 5.14 -17.29 -0.09 1.59 15 13 N -0.76 -16.88 10.98 55.56 0.61 -16.27 15 14 Si 0.92 16.78 29.59 -169.99 -5.03 11.75 15 15 H -0.25 -4.80 7.11 56.52 0.40 -4.40 15 16 H -0.27 -4.89 7.11 56.52 0.40 -4.49 15 17 H -0.27 -4.66 7.11 56.52 0.40 -4.26 15 18 C -0.17 -4.11 5.87 -105.14 -0.62 -4.73 15 19 C 0.30 7.43 13.58 -22.47 -0.31 7.12 15 20 N -0.51 -12.70 18.54 41.84 0.78 -11.92 15 21 S 0.01 0.24 21.96 -107.50 -2.36 -2.12 15 22 H 0.06 0.60 8.03 -51.93 -0.42 0.18 15 23 H 0.10 0.82 8.14 -51.93 -0.42 0.40 15 24 H 0.06 0.59 8.02 -51.93 -0.42 0.17 15 25 H 0.13 2.71 7.94 -52.48 -0.42 2.30 15 26 H 0.10 1.80 8.06 -52.48 -0.42 1.37 15 27 H 0.13 2.92 6.20 -52.48 -0.33 2.60 15 28 H 0.29 5.74 8.29 -40.82 -0.34 5.40 15 LS Contribution 271.49 15.07 4.09 4.09 Total: -1.00 -26.05 271.49 -6.73 -32.78 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -1.94 Total: 1.09 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -2.69 Total: -14.55 kcal Atomic # 7 Polarization: -29.58 SS G_CDS: 1.39 Total: -28.20 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.20 Total: -4.84 kcal Atomic # 14 Polarization: 16.78 SS G_CDS: -5.03 Total: 11.75 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -2.36 Total: -2.12 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -26.05 -6.73 -32.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396198028.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.284 kcal (2) G-P(sol) polarization free energy of solvation -26.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds