Wall clock time and date at job start Mon Mar 30 2020 06:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35612 * 117.00003 * 2 1 4 4 C 1.32874 * 124.59862 * 179.97438 * 3 2 1 5 5 C 1.40511 * 115.71591 * 180.02562 * 4 3 2 6 6 C 1.40208 * 112.54426 * 359.97438 * 5 4 3 7 7 C 1.40223 * 120.43781 * 179.97438 * 6 5 4 8 8 C 1.35858 * 121.25717 * 359.97438 * 7 6 5 9 9 C 1.40943 * 120.25661 * 0.02562 * 8 7 6 10 10 C 1.40566 * 120.14673 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00230 * 154.06996 * 10 9 8 12 12 C 1.40241 * 120.00123 * 334.07704 * 10 9 8 13 13 N 1.30681 * 119.99772 * 342.96856 * 12 10 9 14 14 Si 1.86794 * 119.99948 * 162.97266 * 12 10 9 15 15 H 1.48493 * 109.47386 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47383 * 119.99925 * 14 12 10 17 17 H 1.48504 * 109.46899 * 239.99462 * 14 12 10 18 18 C 1.41587 * 119.70777 * 359.97438 * 9 8 7 19 19 C 1.43203 * 120.18510 * 180.02562 * 18 9 8 20 20 N 5.91183 * 164.31575 * 0.02704 * 2 1 3 21 21 S 1.75456 * 124.59644 * 0.02562 * 3 2 1 22 22 H 1.08998 * 109.46923 * 59.99991 * 1 2 3 23 23 H 1.08997 * 109.46702 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47017 * 299.99706 * 1 2 3 25 25 H 1.08006 * 122.14376 * 359.75489 * 4 3 2 26 26 H 1.08003 * 119.36498 * 179.97438 * 7 6 5 27 27 H 1.08005 * 119.86575 * 180.02562 * 8 7 6 28 28 H 0.97000 * 119.99384 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0448 1.2083 0.0000 4 6 3.3618 1.3840 0.0005 5 6 3.7988 2.7195 0.0010 6 6 2.7352 3.6330 0.0002 7 6 2.9841 5.0130 0.0011 8 6 4.2521 5.5006 0.0032 9 6 5.3519 4.6192 0.0040 10 6 6.6630 5.1262 0.0056 11 1 7.4696 4.5363 0.4151 12 6 6.9236 6.3982 -0.5245 13 7 6.0482 6.9717 -1.3073 14 14 8.5219 7.2724 -0.1119 15 1 9.3364 6.4165 0.7875 16 1 9.2781 7.5378 -1.3621 17 1 8.2215 8.5585 0.5672 18 6 5.1304 3.2208 0.0031 19 6 6.2403 2.3159 0.0045 20 7 7.1208 1.5982 0.0008 21 16 1.2102 2.7517 0.0006 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 4.0523 0.5535 0.0048 26 1 2.1518 5.7013 0.0001 27 1 4.4180 6.5679 0.0042 28 1 6.2287 7.8512 -1.6742 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396198028.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:27 Heat of formation + Delta-G solvation = 9.293841 kcal Electronic energy + Delta-G solvation = -15835.757151 eV Core-core repulsion = 13135.622173 eV Total energy + Delta-G solvation = -2700.134978 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.49334 -39.67399 -36.99439 -36.69044 -34.58881 -32.10990 -30.16227 -28.10067 -27.23884 -24.24261 -23.91210 -21.79267 -20.21908 -19.12730 -18.29297 -17.40673 -16.85601 -16.70416 -16.29223 -15.95965 -15.19754 -14.78078 -14.74147 -14.32674 -13.73853 -13.69925 -13.50435 -13.42016 -13.09674 -12.99999 -12.79776 -12.54143 -12.33536 -11.93739 -11.77599 -11.45785 -11.41611 -10.83809 -10.19417 -9.04536 -8.92355 -8.46559 -6.58411 -0.13270 0.40752 0.55453 1.00420 1.37213 1.40300 1.52330 1.63106 2.08707 2.14453 2.23869 2.29933 2.63717 3.57012 3.66607 4.26164 4.28066 4.32320 4.43262 4.63124 4.66972 4.76307 4.89832 5.03537 5.22967 5.41196 5.48923 5.65442 5.82620 5.97169 6.08547 6.33252 6.61683 6.67953 7.00374 8.04747 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.034684 B = 0.005933 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.103871 B = 4718.312743 C = 5441.633193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.298 6.298 3 C 0.052 3.948 4 C -0.219 4.219 5 C 0.034 3.966 6 C -0.257 4.257 7 C -0.044 4.044 8 C -0.135 4.135 9 C 0.141 3.859 10 C -0.457 4.457 11 H 0.070 0.930 12 C 0.048 3.952 13 N -0.779 5.779 14 Si 0.979 3.021 15 H -0.269 1.269 16 H -0.262 1.262 17 H -0.246 1.246 18 C -0.207 4.207 19 C 0.308 3.692 20 N -0.536 5.536 21 S 0.100 5.900 22 H 0.068 0.932 23 H 0.136 0.864 24 H 0.069 0.931 25 H 0.122 0.878 26 H 0.135 0.865 27 H 0.134 0.866 28 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.582 -0.226 1.428 11.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.212 6.212 3 C -0.109 4.109 4 C -0.250 4.250 5 C 0.025 3.975 6 C -0.372 4.372 7 C -0.066 4.066 8 C -0.156 4.156 9 C 0.135 3.865 10 C -0.484 4.484 11 H 0.088 0.912 12 C -0.174 4.174 13 N -0.401 5.401 14 Si 0.799 3.201 15 H -0.193 1.193 16 H -0.187 1.187 17 H -0.170 1.170 18 C -0.217 4.217 19 C 0.000 4.000 20 N -0.217 5.217 21 S 0.358 5.642 22 H 0.087 0.913 23 H 0.154 0.846 24 H 0.088 0.912 25 H 0.140 0.860 26 H 0.153 0.847 27 H 0.151 0.849 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.737 -0.958 1.259 11.843 hybrid contribution 1.896 0.100 -0.009 1.898 sum -9.841 -0.857 1.250 9.957 Atomic orbital electron populations 1.23629 0.75314 1.06822 1.02951 1.85932 1.23842 1.22489 1.88934 1.22889 0.94819 0.89337 1.03806 1.19226 0.93836 0.96635 1.15335 1.17411 0.92069 0.90978 0.97031 1.22002 0.94272 0.97432 1.23493 1.20115 0.97258 0.91435 0.97747 1.21007 0.90758 0.99917 1.03938 1.17526 0.94443 0.88865 0.85645 1.19898 0.94400 1.01062 1.33051 0.91166 1.26759 1.02400 0.96568 0.91645 1.69690 1.36209 1.15670 1.18574 0.85176 0.76675 0.78706 0.79517 1.19314 1.18693 1.17001 1.15838 0.85603 0.90229 1.30024 1.25909 0.92164 0.91289 0.90642 1.80952 1.11557 1.12294 1.16892 1.83180 1.06104 0.93672 1.81277 0.91308 0.84582 0.91200 0.86026 0.84733 0.84862 0.88351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 10.24 113.37 1.16 1.30 15 2 O -0.30 -8.80 10.56 -89.23 -0.94 -9.74 15 3 C 0.05 1.82 7.14 66.64 0.48 2.29 15 4 C -0.22 -9.07 9.71 21.65 0.21 -8.86 15 5 C 0.03 1.55 5.85 -21.24 -0.12 1.42 15 6 C -0.26 -10.32 6.51 23.23 0.15 -10.17 15 7 C -0.04 -1.71 9.96 22.20 0.22 -1.49 15 8 C -0.14 -6.03 8.59 22.38 0.19 -5.83 15 9 C 0.14 7.02 5.57 -21.22 -0.12 6.91 15 10 C -0.46 -22.84 8.44 23.33 0.20 -22.64 15 11 H 0.07 3.67 7.26 -2.91 -0.02 3.65 15 12 C 0.05 2.14 5.14 85.35 0.44 2.58 15 13 N -0.78 -34.36 10.98 21.88 0.24 -34.12 15 14 Si 0.98 34.40 29.59 68.60 2.03 36.43 15 15 H -0.27 -9.98 7.11 99.48 0.71 -9.27 15 16 H -0.26 -8.91 7.11 99.48 0.71 -8.20 15 17 H -0.25 -7.87 7.11 99.48 0.71 -7.16 15 18 C -0.21 -10.32 5.87 -20.20 -0.12 -10.44 15 19 C 0.31 15.86 13.58 88.33 1.20 17.06 15 20 N -0.54 -28.02 18.54 19.00 0.35 -27.67 15 21 S 0.10 3.09 21.96 -56.49 -1.24 1.85 15 22 H 0.07 1.12 8.03 -2.39 -0.02 1.11 15 23 H 0.14 1.57 8.14 -2.39 -0.02 1.55 15 24 H 0.07 1.13 8.02 -2.39 -0.02 1.11 15 25 H 0.12 5.18 7.94 -2.91 -0.02 5.16 15 26 H 0.13 4.32 8.06 -2.91 -0.02 4.30 15 27 H 0.13 5.84 6.20 -2.91 -0.02 5.82 15 28 H 0.30 11.71 8.29 -92.71 -0.77 10.94 15 Total: -1.00 -57.64 271.49 5.53 -52.11 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 1.21 Total: 9.00 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 3.89 Total: -27.87 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: 0.59 Total: -61.79 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.94 Total: -9.74 kcal Atomic # 14 Polarization: 34.40 SS G_CDS: 2.03 Total: 36.43 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.24 Total: 1.85 kcal Total: -57.64 5.53 -52.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396198028.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.404 kcal (2) G-P(sol) polarization free energy of solvation -57.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds