Wall clock time and date at job start Mon Mar 30 2020 06:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35633 * 117.00370 * 2 1 4 4 C 1.37598 * 122.62137 * 90.02333 * 3 2 1 5 5 C 1.39635 * 124.84812 * 0.02562 * 4 3 2 6 6 H 1.08005 * 119.99733 * 359.72360 * 5 4 3 7 7 C 1.40069 * 120.00314 * 179.44609 * 5 4 3 8 8 N 1.30895 * 119.99994 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00259 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46783 * 60.00045 * 9 7 5 11 11 H 1.48495 * 109.47289 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47229 * 300.00233 * 9 7 5 13 13 S 1.75431 * 110.31010 * 179.75431 * 4 3 2 14 14 C 1.75968 * 91.90913 * 0.22825 * 13 4 3 15 15 C 1.40090 * 110.15281 * 359.97438 * 14 13 4 16 16 C 1.41670 * 118.75135 * 179.97438 * 15 14 13 17 17 C 1.37274 * 120.73915 * 359.97438 * 16 15 14 18 18 C 1.38380 * 120.68052 * 0.04098 * 17 16 15 19 19 C 1.39334 * 120.02783 * 359.93804 * 18 17 16 20 20 C 1.43199 * 119.95968 * 180.02562 * 19 18 17 21 21 N 7.10824 * 116.36882 * 345.35611 * 2 1 3 22 22 H 1.09007 * 109.46845 * 59.99958 * 1 2 3 23 23 H 1.09001 * 109.47033 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47413 * 300.00308 * 1 2 3 25 25 H 0.96995 * 120.00121 * 179.97438 * 8 7 5 26 26 H 1.08001 * 119.62578 * 180.02562 * 16 15 14 27 27 H 1.08003 * 119.65954 * 180.02562 * 17 16 15 28 28 H 1.07998 * 119.98568 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 6 2.3820 1.8691 1.1589 5 6 2.1400 1.3920 2.4487 6 1 1.6502 0.4397 2.5891 7 6 2.5377 2.1456 3.5604 8 7 3.1357 3.2974 3.3903 9 14 2.2145 1.5068 5.2858 10 1 2.9053 0.2051 5.4691 11 1 2.7283 2.4835 6.2795 12 1 0.7538 1.3238 5.4804 13 16 3.1664 3.3931 0.7849 14 6 3.0178 3.1123 -0.9459 15 6 2.3856 1.8849 -1.1832 16 6 2.1715 1.4763 -2.5227 17 6 2.5746 2.2666 -3.5702 18 6 3.1998 3.4794 -3.3399 19 6 3.4250 3.9110 -2.0344 20 6 4.0715 5.1666 -1.7977 21 7 4.5861 6.1618 -1.6101 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 3.4108 3.8194 4.1601 26 1 1.6850 0.5328 -2.7218 27 1 2.4023 1.9382 -4.5846 28 1 3.5127 4.0921 -4.1725 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396198068.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:30 Heat of formation + Delta-G solvation = 6.930724 kcal Electronic energy + Delta-G solvation = -16105.390808 eV Core-core repulsion = 13405.153358 eV Total energy + Delta-G solvation = -2700.237450 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.79755 -37.14263 -35.69415 -34.69525 -32.65132 -30.38360 -29.32091 -26.53731 -25.16198 -22.82590 -22.29168 -19.84082 -18.58895 -17.23801 -16.12228 -16.01286 -14.86050 -14.62867 -14.46418 -14.25842 -13.73790 -13.39656 -13.14819 -12.66948 -12.52611 -12.18806 -12.06021 -11.76384 -11.65748 -11.37491 -11.18352 -10.74355 -10.67384 -10.49351 -10.27309 -9.50010 -9.41098 -8.70757 -8.54705 -7.70850 -7.40310 -6.59018 -4.84526 1.41470 2.04230 2.61755 2.74711 2.80392 2.92894 3.10065 3.22092 3.40407 3.57554 3.73955 4.46365 4.57936 4.68075 5.37137 5.62835 5.71524 6.01633 6.12002 6.18741 6.31723 6.35137 6.46557 6.53430 6.78831 6.91287 7.11680 7.14610 7.39276 7.58110 7.76020 7.85295 8.05064 8.17700 8.91974 9.42279 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.021361 B = 0.008499 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.505660 B = 3293.527565 C = 4529.337708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.296 6.296 3 C -0.168 4.168 4 C 0.033 3.967 5 C -0.352 4.352 6 H 0.107 0.893 7 C 0.049 3.951 8 N -0.766 5.766 9 Si 0.943 3.057 10 H -0.256 1.256 11 H -0.271 1.271 12 H -0.257 1.257 13 S 0.172 5.828 14 C -0.221 4.221 15 C 0.006 3.994 16 C -0.113 4.113 17 C -0.116 4.116 18 C -0.134 4.134 19 C 0.018 3.982 20 C 0.270 3.730 21 N -0.447 5.447 22 H 0.026 0.974 23 H 0.068 0.932 24 H 0.034 0.966 25 H 0.307 0.693 26 H 0.111 0.889 27 H 0.115 0.885 28 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.043 -2.844 -1.972 4.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.212 6.212 3 C -0.217 4.217 4 C -0.088 4.088 5 C -0.385 4.385 6 H 0.125 0.875 7 C -0.174 4.174 8 N -0.392 5.392 9 Si 0.766 3.234 10 H -0.180 1.180 11 H -0.195 1.195 12 H -0.181 1.181 13 S 0.433 5.567 14 C -0.338 4.338 15 C -0.002 4.002 16 C -0.133 4.133 17 C -0.137 4.137 18 C -0.157 4.157 19 C 0.010 3.990 20 C -0.045 4.045 21 N -0.123 5.123 22 H 0.045 0.955 23 H 0.086 0.914 24 H 0.052 0.948 25 H 0.121 0.879 26 H 0.130 0.870 27 H 0.133 0.867 28 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.471 -0.152 -0.653 1.617 hybrid contribution -1.173 -1.525 -0.247 1.940 sum -2.644 -1.678 -0.899 3.258 Atomic orbital electron populations 1.22924 0.85079 1.00164 0.99258 1.86125 1.16377 1.24955 1.93779 1.16949 1.20467 0.95318 0.89001 1.21711 0.95841 0.94921 0.96290 1.19314 1.26699 1.04241 0.88293 0.87548 1.26468 0.92718 0.93994 1.04195 1.68593 1.25089 1.09927 1.35566 0.85705 0.80473 0.79930 0.77327 1.17975 1.19530 1.18103 1.85203 1.62804 1.19561 0.89153 1.23436 1.09566 0.99037 1.01757 1.17952 0.96513 0.92180 0.93511 1.20940 1.01918 0.99449 0.91038 1.20431 1.00518 0.94644 0.98060 1.20529 1.03878 0.97787 0.93500 1.15221 1.02685 0.87991 0.93117 1.26030 0.92833 0.92935 0.92657 1.81099 1.10806 1.12009 1.08410 0.95509 0.91375 0.94777 0.87938 0.87043 0.86708 0.86644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 11.13 101.05 1.12 1.52 15 2 O -0.30 -6.71 10.06 -18.60 -0.19 -6.89 15 3 C -0.17 -4.01 5.87 -38.97 -0.23 -4.24 15 4 C 0.03 0.80 6.12 -39.29 -0.24 0.56 15 5 C -0.35 -8.25 9.08 -38.37 -0.35 -8.60 15 6 H 0.11 2.41 7.71 -52.48 -0.40 2.00 15 7 C 0.05 1.06 5.50 -17.26 -0.09 0.96 15 8 N -0.77 -17.05 10.58 55.56 0.59 -16.46 15 9 Si 0.94 16.06 29.56 -169.99 -5.03 11.03 15 10 H -0.26 -4.34 7.11 56.52 0.40 -3.94 15 11 H -0.27 -4.47 7.11 56.52 0.40 -4.07 15 12 H -0.26 -4.31 7.11 56.52 0.40 -3.91 15 13 S 0.17 4.07 19.77 -107.50 -2.13 1.94 15 14 C -0.22 -4.96 6.33 -37.84 -0.24 -5.20 15 15 C 0.01 0.14 5.86 -107.05 -0.63 -0.48 15 16 C -0.11 -2.17 9.99 -38.62 -0.39 -2.56 15 17 C -0.12 -1.94 9.97 -39.88 -0.40 -2.33 15 18 C -0.13 -2.32 9.74 -39.12 -0.38 -2.70 15 19 C 0.02 0.37 5.76 -106.51 -0.61 -0.24 15 20 C 0.27 5.48 15.04 -22.48 -0.34 5.14 15 21 N -0.45 -9.39 18.54 41.83 0.78 -8.62 15 22 H 0.03 0.47 8.14 -51.92 -0.42 0.05 15 23 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 24 H 0.03 0.63 8.14 -51.93 -0.42 0.21 15 25 H 0.31 6.12 8.30 -40.82 -0.34 5.78 15 26 H 0.11 1.99 8.06 -52.49 -0.42 1.57 15 27 H 0.11 1.51 8.06 -52.48 -0.42 1.09 15 28 H 0.12 1.67 8.06 -52.49 -0.42 1.24 15 LS Contribution 274.83 15.07 4.14 4.14 Total: -1.00 -25.69 274.83 -6.68 -32.37 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -2.08 Total: 0.65 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -2.77 Total: -18.17 kcal Atomic # 7 Polarization: -26.44 SS G_CDS: 1.36 Total: -25.08 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.19 Total: -6.89 kcal Atomic # 14 Polarization: 16.06 SS G_CDS: -5.03 Total: 11.03 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -2.13 Total: 1.94 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -25.69 -6.68 -32.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396198068.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.304 kcal (2) G-P(sol) polarization free energy of solvation -25.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds