Wall clock time and date at job start Mon Mar 30 2020 06:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35704 * 116.99771 * 2 1 4 4 C 1.40122 * 120.01270 * 90.00029 * 3 2 1 5 5 S 1.75787 * 130.09731 * 359.72244 * 4 3 2 6 6 C 1.69980 * 93.20399 * 179.97438 * 5 4 3 7 7 C 1.36553 * 111.91575 * 0.02562 * 6 5 4 8 8 C 1.40865 * 123.28385 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99724 * 157.29071 * 8 7 6 10 10 C 1.39701 * 119.99819 * 337.28895 * 8 7 6 11 11 N 1.31072 * 120.00179 * 160.58521 * 10 8 7 12 12 Si 1.86803 * 120.00012 * 340.58786 * 10 8 7 13 13 H 1.48495 * 109.47512 * 94.05026 * 12 10 8 14 14 H 1.48499 * 109.46783 * 214.05242 * 12 10 8 15 15 H 1.48496 * 109.47043 * 334.04611 * 12 10 8 16 16 C 1.39292 * 119.65894 * 179.72156 * 4 3 2 17 17 C 1.41016 * 119.51064 * 0.02562 * 16 4 3 18 18 C 1.35897 * 120.81034 * 359.97438 * 17 16 4 19 19 C 1.39709 * 120.00823 * 269.72433 * 3 2 1 20 20 C 1.43200 * 120.13060 * 0.25792 * 19 3 2 21 21 N 3.52358 * 95.84294 * 281.34317 * 2 1 3 22 22 H 1.09003 * 109.47098 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47392 * 299.99733 * 1 2 3 24 24 H 1.09000 * 109.47420 * 60.00322 * 1 2 3 25 25 H 1.08003 * 124.04195 * 179.97438 * 6 5 4 26 26 H 0.96994 * 120.00621 * 180.02562 * 11 10 8 27 27 H 1.08003 * 119.59651 * 180.02562 * 17 16 4 28 28 H 1.08011 * 119.85130 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 2.3632 1.8337 1.2133 5 16 2.0859 1.3037 2.8663 6 6 2.8008 2.6943 3.5331 7 6 3.2446 3.5521 2.5677 8 6 3.8752 4.7787 2.8540 9 1 4.5199 5.2387 2.1197 10 6 3.6667 5.4001 4.0877 11 7 4.5101 6.3077 4.5153 12 14 2.1857 4.9375 5.1280 13 1 2.5735 3.8849 6.1010 14 1 1.7021 6.1351 5.8608 15 1 1.1041 4.4249 4.2491 16 6 3.0007 3.0721 1.2047 17 6 3.3174 3.6818 -0.0267 18 6 3.0086 3.0758 -1.2032 19 6 2.3674 1.8291 -1.2098 20 6 2.0441 1.1936 -2.4517 21 7 1.7877 0.6894 -3.4368 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 2.8922 2.8779 4.5934 26 1 4.3656 6.7389 5.3720 27 1 3.8121 4.6418 -0.0350 28 1 3.2586 3.5566 -2.1375 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396198629.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:44 Heat of formation + Delta-G solvation = 26.481479 kcal Electronic energy + Delta-G solvation = -16085.118456 eV Core-core repulsion = 13385.728790 eV Total energy + Delta-G solvation = -2699.389666 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.85394 -37.58625 -36.41778 -34.85206 -32.87229 -30.16660 -29.47571 -27.01465 -25.91220 -23.73513 -22.08165 -20.18324 -19.04459 -17.44010 -16.88142 -16.23005 -15.54952 -15.35025 -15.04650 -14.29471 -13.82264 -13.57253 -13.48838 -13.10298 -12.80805 -12.62265 -12.26876 -12.12551 -11.83666 -11.60268 -11.28717 -11.00049 -10.59478 -10.29325 -9.96335 -9.89589 -9.73860 -9.37966 -8.78026 -7.86992 -7.13810 -7.08468 -4.60272 0.82151 1.50485 2.37689 2.70205 2.90632 3.00553 3.09350 3.23766 3.42664 3.49559 3.71979 3.89537 4.12949 4.20412 4.95757 5.21498 5.27646 5.35143 5.51850 5.55078 5.61406 5.78087 5.96230 6.33177 6.46115 6.63607 6.75799 6.92193 7.23454 7.40154 7.52601 7.69273 8.08364 8.22835 8.59052 9.89192 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.030078 B = 0.007128 C = 0.006039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.701148 B = 3927.488039 C = 4635.432559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.333 6.333 3 C 0.168 3.832 4 C -0.161 4.161 5 S 0.096 5.904 6 C -0.451 4.451 7 C 0.079 3.921 8 C -0.413 4.413 9 H 0.095 0.905 10 C 0.086 3.914 11 N -0.800 5.800 12 Si 0.916 3.084 13 H -0.272 1.272 14 H -0.293 1.293 15 H -0.241 1.241 16 C -0.021 4.021 17 C -0.071 4.071 18 C -0.089 4.089 19 C -0.058 4.058 20 C 0.276 3.724 21 N -0.438 5.438 22 H 0.094 0.906 23 H 0.054 0.946 24 H 0.043 0.957 25 H 0.141 0.859 26 H 0.288 0.712 27 H 0.137 0.863 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.457 -4.371 -3.806 7.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.250 6.250 3 C 0.116 3.884 4 C -0.278 4.278 5 S 0.361 5.639 6 C -0.586 4.586 7 C 0.070 3.930 8 C -0.444 4.444 9 H 0.113 0.887 10 C -0.134 4.134 11 N -0.423 5.423 12 Si 0.744 3.256 13 H -0.198 1.198 14 H -0.221 1.221 15 H -0.164 1.164 16 C -0.033 4.033 17 C -0.091 4.091 18 C -0.113 4.113 19 C -0.065 4.065 20 C -0.039 4.039 21 N -0.114 5.114 22 H 0.112 0.888 23 H 0.073 0.927 24 H 0.062 0.938 25 H 0.159 0.841 26 H 0.098 0.902 27 H 0.155 0.845 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.290 -6.347 -4.383 9.953 hybrid contribution 0.175 1.629 0.554 1.729 sum -6.115 -4.719 -3.830 8.621 Atomic orbital electron populations 1.23018 0.78677 1.03233 1.01001 1.85956 1.20028 1.24712 1.94264 1.17822 0.96240 0.85218 0.89103 1.22923 1.07716 0.99307 0.97825 1.81906 1.65538 1.23855 0.92625 1.23836 1.30115 1.02817 1.01856 1.17454 0.94074 0.94419 0.87094 1.18957 1.22877 1.02227 1.00340 0.88724 1.26114 0.97214 0.93124 0.96995 1.69774 1.32497 1.20541 1.19484 0.86154 0.82979 0.76902 0.79608 1.19850 1.22120 1.16371 1.19687 0.96288 0.92428 0.94937 1.20631 0.98505 1.00161 0.89768 1.20369 0.99470 0.92744 0.98730 1.16015 1.08875 0.96090 0.85479 1.25476 0.93063 0.92791 0.92553 1.81156 1.09863 1.08966 1.11417 0.88764 0.92736 0.93782 0.84148 0.90150 0.84509 0.84966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 11.13 101.05 1.12 1.58 15 2 O -0.33 -5.48 9.80 -18.82 -0.18 -5.67 15 3 C 0.17 2.94 5.76 -38.33 -0.22 2.72 15 4 C -0.16 -3.14 6.39 -38.48 -0.25 -3.39 15 5 S 0.10 1.89 22.93 -107.50 -2.46 -0.57 15 6 C -0.45 -10.25 8.09 30.12 0.24 -10.01 15 7 C 0.08 1.82 5.34 -106.17 -0.57 1.25 15 8 C -0.41 -10.15 9.57 -38.04 -0.36 -10.52 15 9 H 0.09 2.36 7.85 -52.49 -0.41 1.95 15 10 C 0.09 2.11 5.45 -17.33 -0.09 2.01 15 11 N -0.80 -19.97 13.94 55.54 0.77 -19.19 15 12 Si 0.92 19.84 24.56 -169.99 -4.17 15.67 15 13 H -0.27 -5.84 6.65 56.52 0.38 -5.46 15 14 H -0.29 -6.15 7.11 56.52 0.40 -5.75 15 15 H -0.24 -5.29 6.77 56.52 0.38 -4.91 15 16 C -0.02 -0.43 6.03 -105.11 -0.63 -1.07 15 17 C -0.07 -1.20 9.78 -39.37 -0.38 -1.59 15 18 C -0.09 -1.31 9.67 -39.69 -0.38 -1.69 15 19 C -0.06 -0.93 5.75 -106.69 -0.61 -1.55 15 20 C 0.28 4.42 14.85 -22.47 -0.33 4.08 15 21 N -0.44 -7.45 18.54 41.84 0.78 -6.68 15 22 H 0.09 0.97 8.14 -51.93 -0.42 0.55 15 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 24 H 0.04 0.54 8.14 -51.93 -0.42 0.12 15 25 H 0.14 3.26 4.35 -52.48 -0.23 3.03 15 26 H 0.29 6.54 8.30 -40.82 -0.34 6.20 15 27 H 0.14 2.14 7.85 -52.48 -0.41 1.73 15 28 H 0.13 1.54 8.06 -52.48 -0.42 1.11 15 LS Contribution 268.92 15.07 4.05 4.05 Total: -1.00 -26.11 268.92 -5.62 -31.73 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: -1.92 Total: -1.17 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -2.47 Total: -18.16 kcal Atomic # 7 Polarization: -27.42 SS G_CDS: 1.55 Total: -25.87 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.18 Total: -5.67 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.17 Total: 15.67 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.46 Total: -0.57 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -26.11 -5.62 -31.73 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396198629.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.208 kcal (2) G-P(sol) polarization free energy of solvation -26.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds