Wall clock time and date at job start Mon Mar 30 2020 06:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35704 * 116.99771 * 2 1 4 4 C 1.40122 * 120.01270 * 90.00029 * 3 2 1 5 5 S 1.75787 * 130.09731 * 359.72244 * 4 3 2 6 6 C 1.69980 * 93.20399 * 179.97438 * 5 4 3 7 7 C 1.36553 * 111.91575 * 0.02562 * 6 5 4 8 8 C 1.40865 * 123.28385 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99724 * 157.29071 * 8 7 6 10 10 C 1.39701 * 119.99819 * 337.28895 * 8 7 6 11 11 N 1.31072 * 120.00179 * 160.58521 * 10 8 7 12 12 Si 1.86803 * 120.00012 * 340.58786 * 10 8 7 13 13 H 1.48495 * 109.47512 * 94.05026 * 12 10 8 14 14 H 1.48499 * 109.46783 * 214.05242 * 12 10 8 15 15 H 1.48496 * 109.47043 * 334.04611 * 12 10 8 16 16 C 1.39292 * 119.65894 * 179.72156 * 4 3 2 17 17 C 1.41016 * 119.51064 * 0.02562 * 16 4 3 18 18 C 1.35897 * 120.81034 * 359.97438 * 17 16 4 19 19 C 1.39709 * 120.00823 * 269.72433 * 3 2 1 20 20 C 1.43200 * 120.13060 * 0.25792 * 19 3 2 21 21 N 3.52358 * 95.84294 * 281.34317 * 2 1 3 22 22 H 1.09003 * 109.47098 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47392 * 299.99733 * 1 2 3 24 24 H 1.09000 * 109.47420 * 60.00322 * 1 2 3 25 25 H 1.08003 * 124.04195 * 179.97438 * 6 5 4 26 26 H 0.96994 * 120.00621 * 180.02562 * 11 10 8 27 27 H 1.08003 * 119.59651 * 180.02562 * 17 16 4 28 28 H 1.08011 * 119.85130 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 2.3632 1.8337 1.2133 5 16 2.0859 1.3037 2.8663 6 6 2.8008 2.6943 3.5331 7 6 3.2446 3.5521 2.5677 8 6 3.8752 4.7787 2.8540 9 1 4.5199 5.2387 2.1197 10 6 3.6667 5.4001 4.0877 11 7 4.5101 6.3077 4.5153 12 14 2.1857 4.9375 5.1280 13 1 2.5735 3.8849 6.1010 14 1 1.7021 6.1351 5.8608 15 1 1.1041 4.4249 4.2491 16 6 3.0007 3.0721 1.2047 17 6 3.3174 3.6818 -0.0267 18 6 3.0086 3.0758 -1.2032 19 6 2.3674 1.8291 -1.2098 20 6 2.0441 1.1936 -2.4517 21 7 1.7877 0.6894 -3.4368 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 2.8922 2.8779 4.5934 26 1 4.3656 6.7389 5.3720 27 1 3.8121 4.6418 -0.0350 28 1 3.2586 3.5566 -2.1375 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396198629.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:43 Heat of formation + Delta-G solvation = 12.329559 kcal Electronic energy + Delta-G solvation = -16085.732129 eV Core-core repulsion = 13385.728790 eV Total energy + Delta-G solvation = -2700.003339 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.20930 -38.97022 -37.77000 -36.43007 -34.57522 -31.53296 -30.98407 -28.26223 -27.51907 -25.21566 -23.46526 -21.83460 -20.38935 -18.99834 -18.48099 -17.67205 -16.87102 -16.72119 -16.68014 -15.72473 -15.10211 -14.86981 -14.85443 -14.75746 -14.31718 -14.14460 -13.74246 -13.50262 -13.26025 -12.92509 -12.84993 -12.66220 -12.12504 -11.84612 -11.57541 -11.42312 -11.15865 -11.09852 -10.26700 -9.40821 -8.94748 -8.67635 -6.42346 -0.58981 0.15138 0.88000 1.04957 1.30616 1.38084 1.52623 1.60364 1.74414 2.00951 2.13401 2.43066 2.76264 2.82797 3.18134 3.86267 4.07933 4.20275 4.34890 4.36268 4.42434 4.53031 4.71477 4.84835 4.98397 5.15370 5.29129 5.40625 5.62897 5.69197 6.22720 6.27242 6.39872 6.44591 6.76299 8.11523 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.030078 B = 0.007128 C = 0.006039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.701148 B = 3927.488039 C = 4635.432559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.345 6.345 3 C 0.171 3.829 4 C -0.173 4.173 5 S 0.118 5.882 6 C -0.463 4.463 7 C 0.067 3.933 8 C -0.439 4.439 9 H 0.078 0.922 10 C 0.056 3.944 11 N -0.836 5.836 12 Si 0.960 3.040 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.248 1.248 16 C -0.048 4.048 17 C -0.075 4.075 18 C -0.062 4.062 19 C -0.049 4.049 20 C 0.290 3.710 21 N -0.448 5.448 22 H 0.121 0.879 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.132 0.868 26 H 0.295 0.705 27 H 0.147 0.853 28 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.569 -5.401 -5.398 10.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.262 6.262 3 C 0.119 3.881 4 C -0.289 4.289 5 S 0.382 5.618 6 C -0.598 4.598 7 C 0.057 3.943 8 C -0.471 4.471 9 H 0.096 0.904 10 C -0.161 4.161 11 N -0.461 5.461 12 Si 0.785 3.215 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.171 1.171 16 C -0.059 4.059 17 C -0.095 4.095 18 C -0.085 4.085 19 C -0.056 4.056 20 C -0.025 4.025 21 N -0.124 5.124 22 H 0.139 0.861 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.149 0.851 26 H 0.106 0.894 27 H 0.164 0.836 28 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -7.408 -7.383 -5.989 12.052 hybrid contribution 0.481 1.800 0.869 2.056 sum -6.927 -5.582 -5.120 10.265 Atomic orbital electron populations 1.23285 0.76617 1.05244 1.01374 1.85934 1.21940 1.24101 1.94267 1.17861 0.96093 0.85394 0.88802 1.23019 1.08349 0.99372 0.98207 1.81648 1.65298 1.22015 0.92856 1.24047 1.29824 1.04225 1.01701 1.17670 0.93686 0.93955 0.88952 1.19007 1.24129 1.03443 1.00536 0.90378 1.26653 0.98668 0.93096 0.97731 1.69794 1.33771 1.22057 1.20492 0.85497 0.80550 0.76968 0.78456 1.19791 1.20860 1.17108 1.19757 0.97920 0.93342 0.94889 1.20785 0.98730 1.00678 0.89305 1.20734 0.96671 0.91666 0.99455 1.16080 1.08241 0.96274 0.84980 1.25255 0.92663 0.92394 0.92146 1.81194 1.10135 1.09245 1.11874 0.86067 0.92655 0.93107 0.85109 0.89443 0.83565 0.80919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.13 113.37 1.26 1.91 15 2 O -0.35 -10.47 9.80 -90.24 -0.88 -11.35 15 3 C 0.17 5.55 5.76 23.08 0.13 5.68 15 4 C -0.17 -6.50 6.39 22.98 0.15 -6.35 15 5 S 0.12 4.52 22.93 -56.49 -1.30 3.23 15 6 C -0.46 -21.09 8.09 67.43 0.55 -20.55 15 7 C 0.07 3.13 5.34 -20.86 -0.11 3.01 15 8 C -0.44 -22.22 9.57 23.27 0.22 -21.99 15 9 H 0.08 4.06 7.85 -2.91 -0.02 4.04 15 10 C 0.06 2.78 5.45 85.16 0.46 3.24 15 11 N -0.84 -42.83 13.94 21.79 0.30 -42.52 15 12 Si 0.96 41.23 24.56 68.60 1.68 42.91 15 13 H -0.27 -11.50 6.65 99.48 0.66 -10.83 15 14 H -0.28 -11.40 7.11 99.48 0.71 -10.69 15 15 H -0.25 -10.78 6.77 99.48 0.67 -10.10 15 16 C -0.05 -1.90 6.03 -20.18 -0.12 -2.02 15 17 C -0.08 -2.42 9.78 22.41 0.22 -2.20 15 18 C -0.06 -1.59 9.67 22.20 0.21 -1.38 15 19 C -0.05 -1.42 5.75 -21.20 -0.12 -1.54 15 20 C 0.29 8.27 14.85 88.33 1.31 9.58 15 21 N -0.45 -13.80 18.54 19.00 0.35 -13.45 15 22 H 0.12 2.09 8.14 -2.39 -0.02 2.07 15 23 H 0.05 1.26 8.14 -2.39 -0.02 1.24 15 24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 15 25 H 0.13 6.12 4.35 -2.91 -0.01 6.11 15 26 H 0.30 13.69 8.30 -92.71 -0.77 12.92 15 27 H 0.15 4.38 7.85 -2.91 -0.02 4.36 15 28 H 0.17 3.12 8.06 -2.90 -0.02 3.10 15 Total: -1.00 -55.97 268.92 5.46 -50.51 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: 1.13 Total: 3.28 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 4.16 Total: -32.61 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 0.66 Total: -55.97 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -0.88 Total: -11.35 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 1.68 Total: 42.91 kcal Atomic # 16 Polarization: 4.52 SS G_CDS: -1.30 Total: 3.23 kcal Total: -55.97 5.46 -50.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396198629.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.841 kcal (2) G-P(sol) polarization free energy of solvation -55.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds