Wall clock time and date at job start Mon Mar 30 2020 06:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36082 * 116.99834 * 2 1 4 4 C 1.32862 * 122.58554 * 0.02562 * 3 2 1 5 5 S 1.75214 * 111.40029 * 179.97438 * 4 3 2 6 6 C 1.76128 * 92.29490 * 0.02562 * 5 4 3 7 7 C 1.39019 * 129.56558 * 180.29343 * 6 5 4 8 8 C 1.40261 * 120.48829 * 180.26855 * 7 6 5 9 9 C 1.40425 * 120.53946 * 179.69582 * 8 7 6 10 10 H 1.08008 * 120.00078 * 154.08755 * 9 8 7 11 11 C 1.40061 * 119.99904 * 334.09270 * 9 8 7 12 12 N 1.30785 * 119.99960 * 334.61901 * 11 9 8 13 13 Si 1.86803 * 120.00188 * 154.62178 * 11 9 8 14 14 H 1.48498 * 109.47196 * 180.02562 * 13 11 9 15 15 H 1.48501 * 109.46780 * 299.99620 * 13 11 9 16 16 H 1.48494 * 109.47059 * 59.99578 * 13 11 9 17 17 C 1.46922 * 118.92286 * 359.42095 * 8 7 6 18 18 C 1.43197 * 120.40032 * 180.29737 * 17 8 7 19 19 N 6.27488 * 168.86373 * 180.13609 * 2 1 3 20 20 C 1.38067 * 119.19543 * 0.27436 * 17 8 7 21 21 C 1.40503 * 109.70006 * 359.97438 * 6 5 4 22 22 H 1.08997 * 109.47752 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47298 * 300.00753 * 1 2 3 24 24 H 1.09004 * 109.46949 * 60.00099 * 1 2 3 25 25 H 1.07996 * 124.29798 * 359.97438 * 4 3 2 26 26 H 1.08002 * 119.75446 * 359.96136 * 7 6 5 27 27 H 0.96997 * 119.99788 * 354.23096 * 12 11 9 28 28 H 1.07996 * 119.64754 * 179.97438 * 20 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2125 0.0000 4 6 1.3741 2.3583 0.0005 5 16 2.4572 3.7355 0.0011 6 6 3.8842 2.7030 -0.0002 7 6 5.2298 3.0522 0.0051 8 6 6.2222 2.0610 -0.0028 9 6 7.5817 2.4125 -0.0039 10 1 8.3161 1.7309 0.3993 11 6 7.9854 3.6471 -0.5279 12 7 7.2522 4.2456 -1.4305 13 14 9.5710 4.4389 0.0625 14 1 9.7706 5.7314 -0.6409 15 1 9.4891 4.6796 1.5256 16 1 10.7132 3.5354 -0.2274 17 6 5.8162 0.6490 -0.0036 18 6 6.8030 -0.3887 -0.0052 19 7 7.5857 -1.2119 -0.0029 20 6 4.4718 0.3348 -0.0025 21 6 3.4924 1.3537 -0.0004 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.2966 2.4314 0.0005 26 1 5.5131 4.0944 0.0102 27 1 6.4744 3.7978 -1.7983 28 1 4.1651 -0.7007 -0.0035 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396198654.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:28 Heat of formation + Delta-G solvation = 11.920577 kcal Electronic energy + Delta-G solvation = -15923.818834 eV Core-core repulsion = 13223.797760 eV Total energy + Delta-G solvation = -2700.021074 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.28384 -37.83041 -35.49050 -34.86904 -32.45112 -29.98902 -28.95367 -27.48218 -25.50923 -22.95590 -21.75312 -20.43000 -18.62522 -17.53886 -16.66876 -16.33559 -15.44717 -15.09127 -14.71181 -14.23458 -13.78715 -13.21654 -13.09638 -12.61376 -12.55728 -12.33845 -12.01410 -11.92610 -11.66904 -11.38212 -11.15428 -11.00223 -10.73874 -10.61532 -10.11917 -9.86178 -9.76532 -9.35558 -8.57468 -7.89579 -7.65856 -6.81567 -4.95684 1.71462 1.83064 2.36771 2.80356 2.83093 2.97038 3.16356 3.22153 3.60526 3.68384 3.70326 3.82548 4.24572 4.96324 5.01710 5.20297 5.27760 5.43604 5.58192 5.64958 6.04204 6.27140 6.39683 6.44355 6.67806 6.89937 7.07012 7.19155 7.21999 7.51625 7.55430 7.73871 8.07563 8.21757 8.50401 9.49592 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.023337 B = 0.007024 C = 0.005519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.510089 B = 3985.616861 C = 5072.481990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.310 6.310 3 C 0.172 3.828 4 C -0.368 4.368 5 S 0.031 5.969 6 C -0.026 4.026 7 C -0.209 4.209 8 C 0.137 3.863 9 C -0.453 4.453 10 H 0.091 0.909 11 C 0.034 3.966 12 N -0.749 5.749 13 Si 1.067 2.933 14 H -0.267 1.267 15 H -0.267 1.267 16 H -0.270 1.270 17 C -0.154 4.154 18 C 0.296 3.704 19 N -0.487 5.487 20 C 0.042 3.958 21 C -0.229 4.229 22 H 0.094 0.906 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.150 0.850 26 H 0.121 0.879 27 H 0.309 0.691 28 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.773 0.627 1.578 7.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.224 6.224 3 C 0.117 3.883 4 C -0.501 4.501 5 S 0.288 5.712 6 C -0.142 4.142 7 C -0.236 4.236 8 C 0.128 3.872 9 C -0.480 4.480 10 H 0.109 0.891 11 C -0.194 4.194 12 N -0.369 5.369 13 Si 0.888 3.112 14 H -0.191 1.191 15 H -0.192 1.192 16 H -0.195 1.195 17 C -0.160 4.160 18 C -0.015 4.015 19 N -0.165 5.165 20 C 0.019 3.981 21 C -0.235 4.235 22 H 0.112 0.888 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.167 0.833 26 H 0.139 0.861 27 H 0.124 0.876 28 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.964 1.999 1.366 6.436 hybrid contribution -1.646 -2.393 0.104 2.907 sum -7.610 -0.394 1.470 7.760 Atomic orbital electron populations 1.22945 0.79179 1.03127 1.01115 1.86016 1.20516 1.26976 1.88856 1.18741 0.90705 0.83447 0.95385 1.24137 1.02283 0.95412 1.28292 1.83622 0.95310 1.08219 1.84094 1.22047 0.96785 0.94304 1.01037 1.20278 0.88407 0.98840 1.16098 1.18161 0.92861 0.88129 0.88007 1.20857 0.93369 1.03273 1.30457 0.89091 1.27428 1.04768 0.93932 0.93229 1.70446 1.13094 1.38852 1.14486 0.83585 0.72721 0.77195 0.77721 1.19108 1.19187 1.19474 1.16657 0.88462 0.89209 1.21650 1.25570 0.92395 0.91871 0.91666 1.81056 1.10044 1.11765 1.13606 1.20441 0.90023 0.97023 0.90613 1.17508 0.88333 0.92649 1.24972 0.88803 0.93064 0.93048 0.83276 0.86106 0.87628 0.86955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.92 101.05 1.00 1.38 15 2 O -0.31 -5.27 10.54 -20.00 -0.21 -5.48 15 3 C 0.17 3.29 6.85 -38.65 -0.26 3.02 15 4 C -0.37 -6.50 9.95 28.88 0.29 -6.21 15 5 S 0.03 0.58 23.23 -107.50 -2.50 -1.92 15 6 C -0.03 -0.57 6.42 -38.44 -0.25 -0.81 15 7 C -0.21 -4.73 7.97 -38.53 -0.31 -5.04 15 8 C 0.14 3.19 5.44 -104.80 -0.57 2.62 15 9 C -0.45 -10.52 8.47 -38.08 -0.32 -10.84 15 10 H 0.09 2.12 7.45 -52.48 -0.39 1.73 15 11 C 0.03 0.75 4.93 -17.31 -0.09 0.66 15 12 N -0.75 -17.23 12.33 55.55 0.68 -16.55 15 13 Si 1.07 18.86 30.00 -169.99 -5.10 13.76 15 14 H -0.27 -4.68 7.11 56.52 0.40 -4.28 15 15 H -0.27 -4.55 7.11 56.52 0.40 -4.15 15 16 H -0.27 -4.63 7.11 56.52 0.40 -4.23 15 17 C -0.15 -3.43 5.91 -104.52 -0.62 -4.05 15 18 C 0.30 6.64 14.28 -22.48 -0.32 6.32 15 19 N -0.49 -11.18 18.54 41.84 0.78 -10.41 15 20 C 0.04 0.88 9.72 -38.47 -0.37 0.51 15 21 C -0.23 -4.86 6.03 -105.08 -0.63 -5.49 15 22 H 0.09 0.85 8.14 -51.93 -0.42 0.42 15 23 H 0.05 0.55 7.83 -51.93 -0.41 0.14 15 24 H 0.05 0.56 7.84 -51.93 -0.41 0.15 15 25 H 0.15 2.21 6.91 -52.49 -0.36 1.84 15 26 H 0.12 2.78 6.50 -52.49 -0.34 2.44 15 27 H 0.31 7.29 6.70 -40.82 -0.27 7.02 15 28 H 0.11 2.12 8.06 -52.49 -0.42 1.70 15 LS Contribution 271.28 15.07 4.09 4.09 Total: -1.00 -25.12 271.28 -6.54 -31.66 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -1.82 Total: 2.79 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -2.45 Total: -17.94 kcal Atomic # 7 Polarization: -28.42 SS G_CDS: 1.46 Total: -26.96 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: -0.21 Total: -5.48 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.10 Total: 13.76 kcal Atomic # 16 Polarization: 0.58 SS G_CDS: -2.50 Total: -1.92 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -25.12 -6.54 -31.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396198654.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.576 kcal (2) G-P(sol) polarization free energy of solvation -25.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds