Wall clock time and date at job start Mon Mar 30 2020 06:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36082 * 116.99834 * 2 1 4 4 C 1.32862 * 122.58554 * 0.02562 * 3 2 1 5 5 S 1.75214 * 111.40029 * 179.97438 * 4 3 2 6 6 C 1.76128 * 92.29490 * 0.02562 * 5 4 3 7 7 C 1.39019 * 129.56558 * 180.29343 * 6 5 4 8 8 C 1.40261 * 120.48829 * 180.26855 * 7 6 5 9 9 C 1.40425 * 120.53946 * 179.69582 * 8 7 6 10 10 H 1.08008 * 120.00078 * 154.08755 * 9 8 7 11 11 C 1.40061 * 119.99904 * 334.09270 * 9 8 7 12 12 N 1.30785 * 119.99960 * 334.61901 * 11 9 8 13 13 Si 1.86803 * 120.00188 * 154.62178 * 11 9 8 14 14 H 1.48498 * 109.47196 * 180.02562 * 13 11 9 15 15 H 1.48501 * 109.46780 * 299.99620 * 13 11 9 16 16 H 1.48494 * 109.47059 * 59.99578 * 13 11 9 17 17 C 1.46922 * 118.92286 * 359.42095 * 8 7 6 18 18 C 1.43197 * 120.40032 * 180.29737 * 17 8 7 19 19 N 6.27488 * 168.86373 * 180.13609 * 2 1 3 20 20 C 1.38067 * 119.19543 * 0.27436 * 17 8 7 21 21 C 1.40503 * 109.70006 * 359.97438 * 6 5 4 22 22 H 1.08997 * 109.47752 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47298 * 300.00753 * 1 2 3 24 24 H 1.09004 * 109.46949 * 60.00099 * 1 2 3 25 25 H 1.07996 * 124.29798 * 359.97438 * 4 3 2 26 26 H 1.08002 * 119.75446 * 359.96136 * 7 6 5 27 27 H 0.96997 * 119.99788 * 354.23096 * 12 11 9 28 28 H 1.07996 * 119.64754 * 179.97438 * 20 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2125 0.0000 4 6 1.3741 2.3583 0.0005 5 16 2.4572 3.7355 0.0011 6 6 3.8842 2.7030 -0.0002 7 6 5.2298 3.0522 0.0051 8 6 6.2222 2.0610 -0.0028 9 6 7.5817 2.4125 -0.0039 10 1 8.3161 1.7309 0.3993 11 6 7.9854 3.6471 -0.5279 12 7 7.2522 4.2456 -1.4305 13 14 9.5710 4.4389 0.0625 14 1 9.7706 5.7314 -0.6409 15 1 9.4891 4.6796 1.5256 16 1 10.7132 3.5354 -0.2274 17 6 5.8162 0.6490 -0.0036 18 6 6.8030 -0.3887 -0.0052 19 7 7.5857 -1.2119 -0.0029 20 6 4.4718 0.3348 -0.0025 21 6 3.4924 1.3537 -0.0004 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.2966 2.4314 0.0005 26 1 5.5131 4.0944 0.0102 27 1 6.4744 3.7978 -1.7983 28 1 4.1651 -0.7007 -0.0035 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396198654.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:27 Heat of formation + Delta-G solvation = -0.055766 kcal Electronic energy + Delta-G solvation = -15924.338167 eV Core-core repulsion = 13223.797760 eV Total energy + Delta-G solvation = -2700.540407 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.70630 -39.38651 -37.26013 -36.48828 -34.03575 -31.67240 -30.57261 -28.55361 -27.11813 -24.62958 -23.36799 -21.89125 -20.31057 -19.11499 -18.23770 -17.71791 -16.66833 -16.60332 -16.32717 -15.64313 -15.29507 -14.90820 -14.75588 -14.28052 -14.10780 -13.85763 -13.66954 -13.52427 -13.12179 -12.80934 -12.56334 -12.31487 -12.21793 -11.99837 -11.70566 -11.44119 -11.31950 -10.97112 -10.19761 -9.60253 -9.33582 -8.34780 -6.70121 0.04923 0.16898 0.80848 1.29250 1.31400 1.51757 1.72411 1.80445 1.82567 2.10524 2.23664 2.46165 2.55742 3.24084 3.28574 3.95690 4.05714 4.32342 4.43530 4.58767 4.63638 4.74334 4.77554 4.89803 4.98724 5.23243 5.37144 5.44806 5.54270 5.79774 5.82905 6.33171 6.43624 6.50465 6.71452 7.75439 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.023337 B = 0.007024 C = 0.005519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.510089 B = 3985.616861 C = 5072.481990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.324 6.324 3 C 0.159 3.841 4 C -0.352 4.352 5 S 0.056 5.944 6 C -0.045 4.045 7 C -0.221 4.221 8 C 0.123 3.877 9 C -0.484 4.484 10 H 0.082 0.918 11 C 0.010 3.990 12 N -0.768 5.768 13 Si 1.111 2.889 14 H -0.263 1.263 15 H -0.256 1.256 16 H -0.262 1.262 17 C -0.168 4.168 18 C 0.303 3.697 19 N -0.500 5.500 20 C 0.044 3.956 21 C -0.236 4.236 22 H 0.122 0.878 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.184 0.816 26 H 0.111 0.889 27 H 0.296 0.704 28 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.660 0.622 1.935 9.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.239 6.239 3 C 0.104 3.896 4 C -0.485 4.485 5 S 0.314 5.686 6 C -0.161 4.161 7 C -0.248 4.248 8 C 0.115 3.885 9 C -0.510 4.510 10 H 0.100 0.900 11 C -0.213 4.213 12 N -0.387 5.387 13 Si 0.926 3.074 14 H -0.187 1.187 15 H -0.181 1.181 16 H -0.186 1.186 17 C -0.174 4.174 18 C -0.007 4.007 19 N -0.179 5.179 20 C 0.021 3.979 21 C -0.241 4.241 22 H 0.140 0.860 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.202 0.798 26 H 0.128 0.872 27 H 0.110 0.890 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.879 1.981 1.723 8.304 hybrid contribution -1.370 -2.464 -0.003 2.819 sum -9.248 -0.483 1.720 9.419 Atomic orbital electron populations 1.23339 0.76260 1.05515 1.02224 1.85999 1.23411 1.25780 1.88662 1.18597 0.89843 0.84840 0.96361 1.24545 1.03782 0.94282 1.25906 1.83566 0.93824 1.07996 1.83253 1.22351 0.97525 0.95691 1.00546 1.20171 0.89097 0.98211 1.17325 1.18390 0.93294 0.88805 0.88006 1.20922 0.93369 1.04303 1.32440 0.90001 1.28579 1.06587 0.93875 0.92274 1.70536 1.13451 1.39022 1.15727 0.83066 0.69777 0.76648 0.77864 1.18693 1.18061 1.18597 1.16757 0.89108 0.88832 1.22662 1.25620 0.92207 0.91660 0.91262 1.81039 1.10244 1.12278 1.14308 1.20637 0.89434 0.98101 0.89683 1.17918 0.90079 0.92485 1.23665 0.86023 0.91817 0.91894 0.79844 0.87151 0.89031 0.85071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.92 113.37 1.12 1.53 15 2 O -0.32 -10.04 10.54 -94.48 -1.00 -11.04 15 3 C 0.16 5.65 6.85 22.90 0.16 5.81 15 4 C -0.35 -11.22 9.95 66.64 0.66 -10.56 15 5 S 0.06 2.00 23.23 -56.49 -1.31 0.69 15 6 C -0.05 -1.95 6.42 23.01 0.15 -1.80 15 7 C -0.22 -10.23 7.97 22.95 0.18 -10.05 15 8 C 0.12 5.90 5.44 -19.98 -0.11 5.80 15 9 C -0.48 -23.21 8.47 23.25 0.20 -23.01 15 10 H 0.08 3.96 7.45 -2.91 -0.02 3.94 15 11 C 0.01 0.43 4.93 85.29 0.42 0.85 15 12 N -0.77 -36.32 12.33 21.85 0.27 -36.05 15 13 Si 1.11 38.18 30.00 68.60 2.06 40.24 15 14 H -0.26 -8.79 7.11 99.48 0.71 -8.08 15 15 H -0.26 -8.31 7.11 99.48 0.71 -7.60 15 16 H -0.26 -8.57 7.11 99.48 0.71 -7.86 15 17 C -0.17 -7.57 5.91 -19.80 -0.12 -7.69 15 18 C 0.30 13.77 14.28 88.33 1.26 15.03 15 19 N -0.50 -23.13 18.54 19.00 0.35 -22.78 15 20 C 0.04 1.83 9.72 22.99 0.22 2.05 15 21 C -0.24 -9.75 6.03 -20.16 -0.12 -9.87 15 22 H 0.12 1.68 8.14 -2.39 -0.02 1.66 15 23 H 0.06 1.09 7.83 -2.39 -0.02 1.07 15 24 H 0.06 1.09 7.84 -2.39 -0.02 1.07 15 25 H 0.18 4.52 6.91 -2.91 -0.02 4.50 15 26 H 0.11 5.26 6.50 -2.91 -0.02 5.24 15 27 H 0.30 14.57 6.70 -92.71 -0.62 13.95 15 28 H 0.13 4.82 8.06 -2.91 -0.02 4.80 15 Total: -1.00 -53.94 271.28 5.76 -48.18 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 1.36 Total: 12.68 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: 4.03 Total: -31.91 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: 0.62 Total: -58.83 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -1.00 Total: -11.04 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.06 Total: 40.24 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -1.31 Total: 0.69 kcal Total: -53.94 5.76 -48.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396198654.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.122 kcal (2) G-P(sol) polarization free energy of solvation -53.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds