Wall clock time and date at job start Mon Mar 30 2020 06:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35515 * 116.99754 * 2 1 4 4 C 1.39581 * 119.56921 * 270.01587 * 3 2 1 5 5 S 1.76101 * 130.39416 * 0.02562 * 4 3 2 6 6 C 1.75491 * 91.49892 * 179.97438 * 5 4 3 7 7 C 1.32731 * 110.67574 * 0.02562 * 6 5 4 8 8 C 1.39846 * 120.24662 * 179.97438 * 4 3 2 9 9 C 1.47734 * 118.58075 * 0.03694 * 8 4 3 10 10 C 1.43195 * 120.04634 * 180.02562 * 9 8 4 11 11 N 6.73269 * 116.98820 * 0.89411 * 2 1 3 12 12 C 1.38015 * 119.91032 * 359.64225 * 9 8 4 13 13 C 1.40653 * 120.10768 * 0.63618 * 12 9 8 14 14 C 1.40953 * 119.85487 * 179.67699 * 13 12 9 15 15 H 1.07997 * 120.00373 * 154.03584 * 14 13 12 16 16 C 1.39800 * 119.99752 * 333.75934 * 14 13 12 17 17 N 1.30969 * 119.99774 * 342.77038 * 16 14 13 18 18 Si 1.86796 * 120.00084 * 162.77412 * 16 14 13 19 19 H 1.48503 * 109.46859 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47641 * 119.99777 * 18 16 14 21 21 H 1.48496 * 109.47110 * 239.99930 * 18 16 14 22 22 H 1.09008 * 109.46964 * 60.00668 * 1 2 3 23 23 H 1.09000 * 109.47268 * 179.97438 * 1 2 3 24 24 H 1.08990 * 109.47647 * 300.00379 * 1 2 3 25 25 H 1.08003 * 124.66393 * 180.02562 * 6 5 4 26 26 H 1.08001 * 122.06003 * 179.97438 * 7 6 5 27 27 H 1.07996 * 119.94522 * 180.30840 * 12 9 8 28 28 H 0.97004 * 119.99597 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2075 0.0000 4 6 2.3565 1.8214 -1.2140 5 16 2.0817 1.2842 -2.8684 6 6 2.8223 2.7390 -3.5126 7 6 3.2282 3.5330 -2.5295 8 6 2.9908 3.0676 -1.2306 9 6 3.3192 3.7107 0.0583 10 6 3.9682 4.9869 0.0780 11 7 4.4843 5.9988 0.0936 12 6 2.9924 3.0833 1.2434 13 6 2.3597 1.8272 1.2257 14 6 2.0345 1.1882 2.4393 15 1 1.2194 0.4806 2.4755 16 6 2.7708 1.4661 3.5947 17 7 3.9454 2.0378 3.5010 18 14 2.0794 1.0219 5.2722 19 1 0.7452 0.3912 5.1064 20 1 2.9965 0.0704 5.9496 21 1 1.9464 2.2514 6.0942 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8898 25 1 2.9327 2.9580 -4.5644 26 1 3.7111 4.4801 -2.7199 27 1 3.2277 3.5552 2.1859 28 1 4.4564 2.2303 4.3027 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396198666.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:03 Heat of formation + Delta-G solvation = 25.877430 kcal Electronic energy + Delta-G solvation = -16258.769255 eV Core-core repulsion = 13559.353396 eV Total energy + Delta-G solvation = -2699.415860 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.91040 -36.98326 -35.64458 -35.13521 -32.89152 -29.73189 -29.06507 -26.40128 -25.34650 -22.70515 -22.21871 -19.82542 -18.94889 -16.90840 -16.71405 -15.94022 -15.11203 -14.75963 -14.59808 -13.82617 -13.71941 -13.25910 -13.19100 -12.82384 -12.44874 -12.15255 -12.02762 -11.77355 -11.61731 -11.34610 -11.17766 -10.99109 -10.74106 -10.30696 -10.06439 -9.96191 -9.40730 -8.99407 -8.51104 -7.66153 -7.34298 -6.89663 -4.72246 1.31635 2.07632 2.41573 2.71246 2.83746 2.85962 2.91897 3.21277 3.36238 3.57582 3.60853 4.30774 4.67726 4.82584 5.17436 5.52171 5.93959 5.98611 6.06424 6.07421 6.19892 6.40926 6.55914 6.67022 6.69759 6.80971 7.04740 7.27164 7.34272 7.52386 7.89312 8.08482 8.20620 8.28415 8.72315 9.62814 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.019490 B = 0.008754 C = 0.006249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.320086 B = 3197.944764 C = 4479.717759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C -0.014 4.014 4 C -0.073 4.073 5 S 0.042 5.958 6 C -0.263 4.263 7 C -0.079 4.079 8 C -0.164 4.164 9 C -0.007 4.007 10 C 0.282 3.718 11 N -0.463 5.463 12 C -0.052 4.052 13 C 0.103 3.897 14 C -0.400 4.400 15 H 0.097 0.903 16 C 0.067 3.933 17 N -0.768 5.768 18 Si 0.921 3.079 19 H -0.254 1.254 20 H -0.268 1.268 21 H -0.267 1.267 22 H 0.031 0.969 23 H 0.075 0.925 24 H 0.041 0.959 25 H 0.150 0.850 26 H 0.120 0.880 27 H 0.139 0.861 28 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.638 -2.225 -2.228 5.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C -0.066 4.066 4 C -0.189 4.189 5 S 0.303 5.697 6 C -0.397 4.397 7 C -0.109 4.109 8 C -0.172 4.172 9 C -0.013 4.013 10 C -0.032 4.032 11 N -0.140 5.140 12 C -0.074 4.074 13 C 0.097 3.903 14 C -0.428 4.428 15 H 0.115 0.885 16 C -0.155 4.155 17 N -0.391 5.391 18 Si 0.744 3.256 19 H -0.178 1.178 20 H -0.193 1.193 21 H -0.192 1.192 22 H 0.050 0.950 23 H 0.094 0.906 24 H 0.060 0.940 25 H 0.167 0.833 26 H 0.138 0.862 27 H 0.157 0.843 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.153 -1.972 -2.824 5.395 hybrid contribution 0.181 0.909 1.257 1.561 sum -3.972 -1.063 -1.567 4.400 Atomic orbital electron populations 1.22900 0.82988 1.01189 0.99740 1.86013 1.17404 1.25682 1.94001 1.17798 1.10445 0.89430 0.88968 1.22508 1.03925 0.96845 0.95615 1.83746 1.65477 1.22807 0.97663 1.24653 1.13321 0.99888 1.01796 1.19603 1.00409 0.99705 0.91189 1.18107 1.11900 0.96099 0.91070 1.16749 1.03448 0.88028 0.93108 1.25968 0.92437 0.92689 0.92057 1.81086 1.11466 1.12278 1.09183 1.21397 0.96275 0.94226 0.95535 1.17475 0.90712 0.90248 0.91913 1.19732 1.12562 1.19020 0.91490 0.88541 1.26174 0.93781 0.92962 1.02583 1.69820 1.08339 1.27866 1.33051 0.86011 0.80618 0.79493 0.79497 1.17767 1.19318 1.19185 0.95016 0.90603 0.94012 0.83280 0.86215 0.84337 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.88 101.05 1.10 1.57 15 2 O -0.31 -6.77 9.58 -18.24 -0.17 -6.95 15 3 C -0.01 -0.31 5.75 -38.06 -0.22 -0.53 15 4 C -0.07 -1.59 6.41 -38.48 -0.25 -1.84 15 5 S 0.04 0.77 23.26 -107.50 -2.50 -1.73 15 6 C -0.26 -4.60 11.11 28.85 0.32 -4.28 15 7 C -0.08 -1.51 9.76 -40.80 -0.40 -1.91 15 8 C -0.16 -3.50 6.02 -104.75 -0.63 -4.13 15 9 C -0.01 -0.15 5.93 -104.18 -0.62 -0.77 15 10 C 0.28 5.94 15.03 -22.48 -0.34 5.60 15 11 N -0.46 -9.92 18.54 41.84 0.78 -9.15 15 12 C -0.05 -1.16 8.29 -38.75 -0.32 -1.48 15 13 C 0.10 2.39 5.55 -106.94 -0.59 1.80 15 14 C -0.40 -9.01 8.64 -37.97 -0.33 -9.33 15 15 H 0.10 2.10 6.83 -52.49 -0.36 1.74 15 16 C 0.07 1.42 5.12 -17.34 -0.09 1.33 15 17 N -0.77 -16.98 11.00 55.54 0.61 -16.37 15 18 Si 0.92 15.92 29.59 -169.99 -5.03 10.89 15 19 H -0.25 -4.34 7.11 56.52 0.40 -3.94 15 20 H -0.27 -4.64 7.11 56.52 0.40 -4.24 15 21 H -0.27 -4.56 7.11 56.52 0.40 -4.16 15 22 H 0.03 0.52 8.14 -51.92 -0.42 0.10 15 23 H 0.08 1.09 8.14 -51.93 -0.42 0.67 15 24 H 0.04 0.70 7.61 -51.93 -0.40 0.31 15 25 H 0.15 2.15 8.06 -52.48 -0.42 1.72 15 26 H 0.12 2.11 8.01 -52.49 -0.42 1.69 15 27 H 0.14 3.13 6.21 -52.49 -0.33 2.80 15 28 H 0.29 5.83 8.30 -40.82 -0.34 5.49 15 LS Contribution 273.08 15.07 4.12 4.12 Total: -1.00 -24.52 273.08 -6.47 -30.98 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -1.90 Total: 2.18 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -2.36 Total: -13.98 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 1.39 Total: -25.51 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.17 Total: -6.95 kcal Atomic # 14 Polarization: 15.92 SS G_CDS: -5.03 Total: 10.89 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.50 Total: -1.73 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -24.52 -6.47 -30.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396198666.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.861 kcal (2) G-P(sol) polarization free energy of solvation -24.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds