Wall clock time and date at job start Mon Mar 30 2020 06:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35515 * 116.99754 * 2 1 4 4 C 1.39581 * 119.56921 * 270.01587 * 3 2 1 5 5 S 1.76101 * 130.39416 * 0.02562 * 4 3 2 6 6 C 1.75491 * 91.49892 * 179.97438 * 5 4 3 7 7 C 1.32731 * 110.67574 * 0.02562 * 6 5 4 8 8 C 1.39846 * 120.24662 * 179.97438 * 4 3 2 9 9 C 1.47734 * 118.58075 * 0.03694 * 8 4 3 10 10 C 1.43195 * 120.04634 * 180.02562 * 9 8 4 11 11 N 6.73269 * 116.98820 * 0.89411 * 2 1 3 12 12 C 1.38015 * 119.91032 * 359.64225 * 9 8 4 13 13 C 1.40653 * 120.10768 * 0.63618 * 12 9 8 14 14 C 1.40953 * 119.85487 * 179.67699 * 13 12 9 15 15 H 1.07997 * 120.00373 * 154.03584 * 14 13 12 16 16 C 1.39800 * 119.99752 * 333.75934 * 14 13 12 17 17 N 1.30969 * 119.99774 * 342.77038 * 16 14 13 18 18 Si 1.86796 * 120.00084 * 162.77412 * 16 14 13 19 19 H 1.48503 * 109.46859 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47641 * 119.99777 * 18 16 14 21 21 H 1.48496 * 109.47110 * 239.99930 * 18 16 14 22 22 H 1.09008 * 109.46964 * 60.00668 * 1 2 3 23 23 H 1.09000 * 109.47268 * 179.97438 * 1 2 3 24 24 H 1.08990 * 109.47647 * 300.00379 * 1 2 3 25 25 H 1.08003 * 124.66393 * 180.02562 * 6 5 4 26 26 H 1.08001 * 122.06003 * 179.97438 * 7 6 5 27 27 H 1.07996 * 119.94522 * 180.30840 * 12 9 8 28 28 H 0.97004 * 119.99597 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2075 0.0000 4 6 2.3565 1.8214 -1.2140 5 16 2.0817 1.2842 -2.8684 6 6 2.8223 2.7390 -3.5126 7 6 3.2282 3.5330 -2.5295 8 6 2.9908 3.0676 -1.2306 9 6 3.3192 3.7107 0.0583 10 6 3.9682 4.9869 0.0780 11 7 4.4843 5.9988 0.0936 12 6 2.9924 3.0833 1.2434 13 6 2.3597 1.8272 1.2257 14 6 2.0345 1.1882 2.4393 15 1 1.2194 0.4806 2.4755 16 6 2.7708 1.4661 3.5947 17 7 3.9454 2.0378 3.5010 18 14 2.0794 1.0219 5.2722 19 1 0.7452 0.3912 5.1064 20 1 2.9965 0.0704 5.9496 21 1 1.9464 2.2514 6.0942 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8898 25 1 2.9327 2.9580 -4.5644 26 1 3.7111 4.4801 -2.7199 27 1 3.2277 3.5552 2.1859 28 1 4.4564 2.2303 4.3027 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396198666.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:03 Heat of formation + Delta-G solvation = 14.683263 kcal Electronic energy + Delta-G solvation = -16259.254671 eV Core-core repulsion = 13559.353396 eV Total energy + Delta-G solvation = -2699.901275 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.53729 -38.59401 -37.30886 -36.73514 -34.48859 -31.38434 -30.66334 -27.87614 -26.94108 -24.29614 -23.86460 -21.39351 -20.55751 -18.54284 -18.31756 -17.50882 -16.66317 -16.31614 -16.14585 -15.32769 -15.24295 -14.90053 -14.79817 -14.39549 -14.00705 -13.74928 -13.65988 -13.32178 -13.12633 -12.80754 -12.68367 -12.52132 -12.20854 -11.81605 -11.62607 -11.49955 -10.99532 -10.57163 -10.11134 -9.28433 -8.90973 -8.46561 -6.38693 -0.30200 0.42095 0.86361 1.29130 1.32187 1.43530 1.58732 1.66412 1.69537 1.94421 2.17026 2.67578 3.03646 3.18446 3.52595 4.01535 4.47284 4.57051 4.61755 4.69083 4.79440 4.86270 4.94826 5.03093 5.15974 5.20429 5.44674 5.67321 5.72843 5.84980 6.23233 6.42090 6.52690 6.65055 7.10557 8.09346 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.019490 B = 0.008754 C = 0.006249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.320086 B = 3197.944764 C = 4479.717759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.334 6.334 3 C -0.020 4.020 4 C -0.107 4.107 5 S 0.072 5.928 6 C -0.234 4.234 7 C -0.103 4.103 8 C -0.165 4.165 9 C -0.015 4.015 10 C 0.290 3.710 11 N -0.469 5.469 12 C -0.061 4.061 13 C 0.078 3.922 14 C -0.429 4.429 15 H 0.095 0.905 16 C 0.036 3.964 17 N -0.803 5.803 18 Si 0.987 3.013 19 H -0.251 1.251 20 H -0.266 1.266 21 H -0.262 1.262 22 H 0.037 0.963 23 H 0.106 0.894 24 H 0.039 0.961 25 H 0.190 0.810 26 H 0.135 0.865 27 H 0.130 0.870 28 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.263 -2.560 -3.433 6.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.251 6.251 3 C -0.072 4.072 4 C -0.222 4.222 5 S 0.333 5.667 6 C -0.367 4.367 7 C -0.133 4.133 8 C -0.174 4.174 9 C -0.021 4.021 10 C -0.023 4.023 11 N -0.146 5.146 12 C -0.084 4.084 13 C 0.072 3.928 14 C -0.457 4.457 15 H 0.113 0.887 16 C -0.183 4.183 17 N -0.427 5.427 18 Si 0.807 3.193 19 H -0.174 1.174 20 H -0.191 1.191 21 H -0.187 1.187 22 H 0.056 0.944 23 H 0.124 0.876 24 H 0.057 0.943 25 H 0.207 0.793 26 H 0.152 0.848 27 H 0.148 0.852 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.786 -2.309 -4.042 6.676 hybrid contribution 0.349 0.981 1.376 1.726 sum -4.437 -1.327 -2.665 5.343 Atomic orbital electron populations 1.23078 0.80665 1.03266 0.99899 1.85922 1.19600 1.25415 1.94116 1.17963 1.10425 0.89476 0.89355 1.22774 1.04751 0.97471 0.97250 1.83632 1.64953 1.22945 0.95148 1.25195 1.09868 0.98224 1.03425 1.19733 1.02126 1.01038 0.90407 1.18453 1.10991 0.96042 0.91890 1.16807 1.03727 0.88241 0.93337 1.25845 0.92182 0.92458 0.91782 1.81080 1.11708 1.12356 1.09475 1.21321 0.97132 0.94392 0.95530 1.17740 0.91577 0.90763 0.92740 1.19861 1.13447 1.20145 0.92251 0.88667 1.26906 0.93563 0.92422 1.05411 1.69848 1.09409 1.29184 1.34235 0.85044 0.79870 0.79221 0.75177 1.17414 1.19098 1.18684 0.94406 0.87581 0.94275 0.79326 0.84756 0.85196 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 10.88 113.37 1.23 2.09 15 2 O -0.33 -14.32 9.58 -88.17 -0.85 -15.17 15 3 C -0.02 -0.91 5.75 23.25 0.13 -0.78 15 4 C -0.11 -4.57 6.41 22.98 0.15 -4.43 15 5 S 0.07 2.48 23.26 -56.49 -1.31 1.17 15 6 C -0.23 -7.30 11.11 66.65 0.74 -6.56 15 7 C -0.10 -3.70 9.76 21.53 0.21 -3.49 15 8 C -0.17 -6.96 6.02 -19.95 -0.12 -7.08 15 9 C -0.01 -0.65 5.93 -19.58 -0.12 -0.77 15 10 C 0.29 12.25 15.03 88.33 1.33 13.58 15 11 N -0.47 -19.90 18.54 19.00 0.35 -19.55 15 12 C -0.06 -2.84 8.29 22.81 0.19 -2.65 15 13 C 0.08 3.73 5.55 -21.37 -0.12 3.61 15 14 C -0.43 -19.86 8.64 23.31 0.20 -19.66 15 15 H 0.10 4.25 6.83 -2.91 -0.02 4.23 15 16 C 0.04 1.54 5.12 85.20 0.44 1.97 15 17 N -0.80 -36.51 11.00 21.81 0.24 -36.27 15 18 Si 0.99 32.76 29.59 68.60 2.03 34.79 15 19 H -0.25 -8.08 7.11 99.48 0.71 -7.37 15 20 H -0.27 -8.67 7.11 99.48 0.71 -7.96 15 21 H -0.26 -8.42 7.11 99.48 0.71 -7.71 15 22 H 0.04 1.19 8.14 -2.38 -0.02 1.17 15 23 H 0.11 2.84 8.14 -2.39 -0.02 2.82 15 24 H 0.04 1.31 7.61 -2.39 -0.02 1.29 15 25 H 0.19 4.39 8.06 -2.91 -0.02 4.37 15 26 H 0.13 4.40 8.01 -2.91 -0.02 4.38 15 27 H 0.13 6.15 6.21 -2.91 -0.02 6.14 15 28 H 0.30 12.21 8.30 -92.71 -0.77 11.44 15 Total: -1.00 -52.33 273.08 5.94 -46.40 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 1.21 Total: 12.80 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: 4.26 Total: -24.16 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 0.59 Total: -55.82 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.85 Total: -15.17 kcal Atomic # 14 Polarization: 32.76 SS G_CDS: 2.03 Total: 34.79 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -1.31 Total: 1.17 kcal Total: -52.33 5.94 -46.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396198666.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.078 kcal (2) G-P(sol) polarization free energy of solvation -52.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds