Wall clock time and date at job start Mon Mar 30 2020 06:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35244 * 117.00082 * 2 1 4 4 S 1.75160 * 124.53990 * 5.21854 * 3 2 1 5 5 C 1.75932 * 92.78179 * 180.02562 * 4 3 2 6 6 C 1.40081 * 129.55458 * 180.02562 * 5 4 3 7 7 C 1.37197 * 120.70745 * 179.18553 * 6 5 4 8 8 C 1.40112 * 119.96587 * 0.72759 * 7 6 5 9 9 C 1.43201 * 120.05337 * 179.49651 * 8 7 6 10 10 N 8.44158 * 137.57401 * 357.57637 * 2 1 3 11 11 C 1.38907 * 119.89739 * 359.51867 * 8 7 6 12 12 C 1.39529 * 110.57927 * 359.72446 * 5 4 3 13 13 C 1.37422 * 124.54077 * 185.21878 * 3 2 1 14 14 C 1.40613 * 123.23402 * 0.02562 * 13 3 2 15 15 H 1.08002 * 119.99881 * 219.17762 * 14 13 3 16 16 C 1.39597 * 120.00315 * 39.18316 * 14 13 3 17 17 N 1.31224 * 120.00119 * 25.96247 * 16 14 13 18 18 Si 1.86800 * 120.00166 * 205.69272 * 16 14 13 19 19 H 1.48502 * 109.47386 * 89.99632 * 18 16 14 20 20 H 1.48503 * 109.47082 * 209.99960 * 18 16 14 21 21 H 1.48499 * 109.46991 * 329.99952 * 18 16 14 22 22 H 1.09002 * 109.46988 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46657 * 300.00072 * 1 2 3 24 24 H 1.09005 * 109.47117 * 59.99680 * 1 2 3 25 25 H 1.08003 * 119.64523 * 359.97438 * 6 5 4 26 26 H 1.07997 * 120.01798 * 180.24135 * 7 6 5 27 27 H 1.08000 * 119.83787 * 180.02562 * 11 8 7 28 28 H 0.97009 * 119.99731 * 6.58403 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0430 1.2050 0.0000 4 16 1.2137 2.7422 0.1312 5 6 2.7144 3.6565 0.0462 6 6 2.9186 5.0417 0.0872 7 6 4.1850 5.5654 0.0219 8 6 5.2896 4.7124 -0.1022 9 6 6.6114 5.2575 -0.1813 10 7 7.6602 5.6899 -0.2408 11 6 5.1004 3.3370 -0.1489 12 6 3.8066 2.7963 -0.0723 13 6 3.4012 1.3875 -0.1030 14 6 4.3147 0.3251 -0.2219 15 1 5.2615 0.3665 0.2961 16 6 3.9979 -0.7831 -1.0095 17 7 3.1549 -0.6592 -2.0076 18 14 4.7796 -2.4405 -0.6475 19 1 3.9287 -3.1904 0.3112 20 1 4.9051 -3.2147 -1.9085 21 1 6.1265 -2.2342 -0.0572 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 2.0710 5.7040 0.1838 26 1 4.3299 6.6350 0.0584 27 1 5.9525 2.6804 -0.2442 28 1 2.8256 0.2181 -2.2583 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396200557.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:45 Heat of formation + Delta-G solvation = 25.331305 kcal Electronic energy + Delta-G solvation = -16108.190327 eV Core-core repulsion = 13408.750786 eV Total energy + Delta-G solvation = -2699.439541 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.06404 -37.57455 -36.23263 -34.54608 -32.28409 -30.76998 -28.38194 -26.44684 -25.38183 -23.42788 -21.89859 -20.50487 -18.21054 -17.53678 -17.09572 -15.84606 -15.09274 -14.73916 -14.17198 -14.01529 -13.77724 -13.72905 -13.58406 -12.93648 -12.67471 -12.49702 -12.34560 -12.16582 -11.40125 -11.08664 -10.95575 -10.82606 -10.79102 -10.34178 -10.09867 -9.63133 -9.39765 -9.04253 -8.64551 -7.43180 -7.14965 -6.78677 -4.31052 1.08208 1.54857 2.26034 2.84491 2.93034 2.98639 3.23808 3.26918 3.42714 3.66882 4.16452 4.19063 4.32371 4.50262 5.07445 5.21171 5.25902 5.71566 5.72812 5.78540 5.86635 6.00273 6.06387 6.37961 6.48385 6.66727 6.74220 7.18556 7.38563 7.75844 7.91094 8.06569 8.31003 8.64820 8.96949 10.26152 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.018505 B = 0.008578 C = 0.006056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.758102 B = 3263.463018 C = 4622.196447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.253 6.253 3 C -0.148 4.148 4 S 0.002 5.998 5 C -0.114 4.114 6 C -0.091 4.091 7 C -0.083 4.083 8 C -0.058 4.058 9 C 0.273 3.727 10 N -0.445 5.445 11 C -0.016 4.016 12 C -0.042 4.042 13 C 0.049 3.951 14 C -0.508 4.508 15 H 0.075 0.925 16 C 0.049 3.951 17 N -0.787 5.787 18 Si 1.065 2.935 19 H -0.277 1.277 20 H -0.281 1.281 21 H -0.280 1.280 22 H 0.087 0.913 23 H 0.037 0.963 24 H 0.039 0.961 25 H 0.124 0.876 26 H 0.128 0.872 27 H 0.133 0.867 28 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.123 4.677 2.717 6.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.167 6.167 3 C -0.306 4.306 4 S 0.263 5.737 5 C -0.230 4.230 6 C -0.115 4.115 7 C -0.106 4.106 8 C -0.065 4.065 9 C -0.041 4.041 10 N -0.121 5.121 11 C -0.039 4.039 12 C -0.052 4.052 13 C 0.040 3.960 14 C -0.540 4.540 15 H 0.093 0.907 16 C -0.173 4.173 17 N -0.410 5.410 18 Si 0.890 3.110 19 H -0.203 1.203 20 H -0.206 1.206 21 H -0.205 1.205 22 H 0.106 0.894 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.142 0.858 26 H 0.145 0.855 27 H 0.151 0.849 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.001 3.839 2.262 5.988 hybrid contribution 0.511 1.229 0.292 1.363 sum -3.490 5.068 2.554 6.662 Atomic orbital electron populations 1.22824 0.81750 1.02365 0.99647 1.85873 1.17188 1.22670 1.90948 1.22478 0.93653 0.84857 1.29592 1.83209 1.08199 1.00410 1.81848 1.22487 0.96919 0.96729 1.06904 1.20224 0.96728 0.91912 1.02607 1.20628 0.90711 0.98650 1.00641 1.15654 0.85739 0.93107 1.12001 1.25754 0.92695 0.92955 0.92741 1.81176 1.11361 1.08935 1.10675 1.20938 0.96715 0.92174 0.94040 1.19294 0.91713 0.93635 1.00511 1.16818 0.89756 0.89608 0.99797 1.19591 1.03650 1.02040 1.28686 0.90710 1.26613 0.94751 1.03847 0.92090 1.70467 1.21053 1.29402 1.20058 0.83626 0.76215 0.74297 0.76867 1.20250 1.20607 1.20538 0.89440 0.94463 0.94228 0.85787 0.85452 0.84928 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.24 101.05 1.04 1.62 15 2 O -0.25 -5.98 8.52 -17.43 -0.15 -6.13 15 3 C -0.15 -3.47 6.24 30.44 0.19 -3.28 15 4 S 0.00 0.04 21.84 -107.50 -2.35 -2.30 15 5 C -0.11 -2.16 6.42 -38.41 -0.25 -2.41 15 6 C -0.09 -1.39 10.04 -39.27 -0.39 -1.79 15 7 C -0.08 -1.19 9.74 -39.26 -0.38 -1.57 15 8 C -0.06 -0.93 5.72 -107.02 -0.61 -1.54 15 9 C 0.27 4.46 15.32 -22.47 -0.34 4.11 15 10 N -0.45 -7.85 18.54 41.84 0.78 -7.08 15 11 C -0.02 -0.30 9.51 -38.51 -0.37 -0.66 15 12 C -0.04 -0.89 5.99 -105.20 -0.63 -1.52 15 13 C 0.05 1.20 5.01 -105.91 -0.53 0.67 15 14 C -0.51 -12.91 8.77 -38.18 -0.33 -13.24 15 15 H 0.07 1.85 7.96 -52.49 -0.42 1.43 15 16 C 0.05 1.23 4.51 -17.30 -0.08 1.15 15 17 N -0.79 -20.79 12.37 55.53 0.69 -20.10 15 18 Si 1.06 22.13 30.00 -169.99 -5.10 17.03 15 19 H -0.28 -5.70 7.11 56.52 0.40 -5.30 15 20 H -0.28 -5.77 7.11 56.52 0.40 -5.37 15 21 H -0.28 -5.51 7.11 56.52 0.40 -5.11 15 22 H 0.09 1.38 8.14 -51.93 -0.42 0.96 15 23 H 0.04 0.61 7.92 -51.93 -0.41 0.20 15 24 H 0.04 0.69 8.11 -51.93 -0.42 0.27 15 25 H 0.12 1.55 8.06 -52.48 -0.42 1.13 15 26 H 0.13 1.42 8.06 -52.49 -0.42 1.00 15 27 H 0.13 2.43 8.02 -52.49 -0.42 2.01 15 28 H 0.29 7.87 7.38 -40.82 -0.30 7.57 15 LS Contribution 273.74 15.07 4.13 4.13 Total: -1.00 -27.39 273.74 -6.74 -34.13 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -2.04 Total: -1.21 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -2.70 Total: -18.47 kcal Atomic # 7 Polarization: -28.64 SS G_CDS: 1.46 Total: -27.18 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.15 Total: -6.13 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.10 Total: 17.03 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -2.35 Total: -2.30 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.39 -6.74 -34.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396200557.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.459 kcal (2) G-P(sol) polarization free energy of solvation -27.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds