Wall clock time and date at job start Mon Mar 30 2020 06:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35244 * 117.00082 * 2 1 4 4 S 1.75160 * 124.53990 * 5.21854 * 3 2 1 5 5 C 1.75932 * 92.78179 * 180.02562 * 4 3 2 6 6 C 1.40081 * 129.55458 * 180.02562 * 5 4 3 7 7 C 1.37197 * 120.70745 * 179.18553 * 6 5 4 8 8 C 1.40112 * 119.96587 * 0.72759 * 7 6 5 9 9 C 1.43201 * 120.05337 * 179.49651 * 8 7 6 10 10 N 8.44158 * 137.57401 * 357.57637 * 2 1 3 11 11 C 1.38907 * 119.89739 * 359.51867 * 8 7 6 12 12 C 1.39529 * 110.57927 * 359.72446 * 5 4 3 13 13 C 1.37422 * 124.54077 * 185.21878 * 3 2 1 14 14 C 1.40613 * 123.23402 * 0.02562 * 13 3 2 15 15 H 1.08002 * 119.99881 * 219.17762 * 14 13 3 16 16 C 1.39597 * 120.00315 * 39.18316 * 14 13 3 17 17 N 1.31224 * 120.00119 * 25.96247 * 16 14 13 18 18 Si 1.86800 * 120.00166 * 205.69272 * 16 14 13 19 19 H 1.48502 * 109.47386 * 89.99632 * 18 16 14 20 20 H 1.48503 * 109.47082 * 209.99960 * 18 16 14 21 21 H 1.48499 * 109.46991 * 329.99952 * 18 16 14 22 22 H 1.09002 * 109.46988 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46657 * 300.00072 * 1 2 3 24 24 H 1.09005 * 109.47117 * 59.99680 * 1 2 3 25 25 H 1.08003 * 119.64523 * 359.97438 * 6 5 4 26 26 H 1.07997 * 120.01798 * 180.24135 * 7 6 5 27 27 H 1.08000 * 119.83787 * 180.02562 * 11 8 7 28 28 H 0.97009 * 119.99731 * 6.58403 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0430 1.2050 0.0000 4 16 1.2137 2.7422 0.1312 5 6 2.7144 3.6565 0.0462 6 6 2.9186 5.0417 0.0872 7 6 4.1850 5.5654 0.0219 8 6 5.2896 4.7124 -0.1022 9 6 6.6114 5.2575 -0.1813 10 7 7.6602 5.6899 -0.2408 11 6 5.1004 3.3370 -0.1489 12 6 3.8066 2.7963 -0.0723 13 6 3.4012 1.3875 -0.1030 14 6 4.3147 0.3251 -0.2219 15 1 5.2615 0.3665 0.2961 16 6 3.9979 -0.7831 -1.0095 17 7 3.1549 -0.6592 -2.0076 18 14 4.7796 -2.4405 -0.6475 19 1 3.9287 -3.1904 0.3112 20 1 4.9051 -3.2147 -1.9085 21 1 6.1265 -2.2342 -0.0572 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 2.0710 5.7040 0.1838 26 1 4.3299 6.6350 0.0584 27 1 5.9525 2.6804 -0.2442 28 1 2.8256 0.2181 -2.2583 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396200557.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:45 Heat of formation + Delta-G solvation = 10.912141 kcal Electronic energy + Delta-G solvation = -16108.815589 eV Core-core repulsion = 13408.750786 eV Total energy + Delta-G solvation = -2700.064803 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.50582 -39.23875 -37.65544 -36.19364 -33.93243 -32.14991 -29.93474 -28.05066 -27.02511 -24.89235 -23.38148 -22.14253 -19.73452 -19.06546 -18.76222 -17.33994 -16.64893 -16.32111 -15.74153 -15.66105 -15.16000 -15.10707 -15.03073 -14.51796 -14.17207 -13.91883 -13.79269 -13.68820 -12.96094 -12.66496 -12.45820 -12.35500 -12.31017 -11.95476 -11.68056 -11.12885 -11.08400 -10.66884 -10.26014 -9.04481 -8.92066 -8.46991 -6.17895 -0.30210 0.11493 0.74920 1.18086 1.42783 1.55455 1.58616 1.70986 1.79948 2.08312 2.45997 2.76645 2.86918 2.99002 3.25593 3.90379 4.03569 4.32855 4.36212 4.36680 4.46420 4.62388 4.70033 5.03332 5.12405 5.27153 5.33714 5.58437 5.80815 5.99400 6.19898 6.41941 6.57033 6.89952 7.16728 8.33542 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.018505 B = 0.008578 C = 0.006056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.758102 B = 3263.463018 C = 4622.196447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.288 6.288 3 C -0.157 4.157 4 S 0.042 5.958 5 C -0.125 4.125 6 C -0.080 4.080 7 C -0.058 4.058 8 C -0.043 4.043 9 C 0.289 3.711 10 N -0.462 5.462 11 C -0.030 4.030 12 C -0.075 4.075 13 C 0.015 3.985 14 C -0.543 4.543 15 H 0.064 0.936 16 C 0.015 3.985 17 N -0.815 5.815 18 Si 1.107 2.893 19 H -0.274 1.274 20 H -0.277 1.277 21 H -0.266 1.266 22 H 0.108 0.892 23 H 0.053 0.947 24 H 0.043 0.957 25 H 0.165 0.835 26 H 0.174 0.826 27 H 0.122 0.878 28 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.776 7.032 3.398 9.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.202 6.202 3 C -0.315 4.315 4 S 0.303 5.697 5 C -0.242 4.242 6 C -0.104 4.104 7 C -0.081 4.081 8 C -0.050 4.050 9 C -0.025 4.025 10 N -0.138 5.138 11 C -0.053 4.053 12 C -0.084 4.084 13 C 0.005 3.995 14 C -0.576 4.576 15 H 0.082 0.918 16 C -0.200 4.200 17 N -0.440 5.440 18 Si 0.928 3.072 19 H -0.199 1.199 20 H -0.202 1.202 21 H -0.190 1.190 22 H 0.126 0.874 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.182 0.818 26 H 0.192 0.808 27 H 0.140 0.860 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.649 6.212 2.952 8.302 hybrid contribution 0.676 0.734 0.158 1.011 sum -3.973 6.947 3.110 8.586 Atomic orbital electron populations 1.23083 0.79322 1.04142 1.00512 1.85821 1.19918 1.23579 1.90927 1.22968 0.94568 0.86677 1.27309 1.82846 1.07446 0.97398 1.82023 1.22845 0.96019 0.98281 1.07029 1.20689 0.98566 0.90432 1.00677 1.21142 0.89234 1.00563 0.97179 1.15684 0.86409 0.92161 1.10783 1.25612 0.92383 0.92352 0.92152 1.81209 1.11719 1.09780 1.11139 1.20879 0.95718 0.93408 0.95265 1.19260 0.93408 0.92706 1.03008 1.17278 0.90531 0.91236 1.00405 1.19691 1.04056 1.03699 1.30123 0.91782 1.27712 0.94475 1.06559 0.91279 1.70589 1.23749 1.28046 1.21584 0.83096 0.76196 0.71079 0.76848 1.19933 1.20232 1.19023 0.87391 0.92812 0.93874 0.81760 0.80818 0.86032 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 10.24 113.37 1.16 2.10 15 2 O -0.29 -13.91 8.52 -85.27 -0.73 -14.64 15 3 C -0.16 -7.53 6.24 67.63 0.42 -7.11 15 4 S 0.04 1.58 21.84 -56.49 -1.23 0.35 15 5 C -0.13 -4.53 6.42 23.03 0.15 -4.38 15 6 C -0.08 -2.09 10.04 22.47 0.23 -1.87 15 7 C -0.06 -1.37 9.74 22.48 0.22 -1.16 15 8 C -0.04 -1.29 5.72 -21.42 -0.12 -1.41 15 9 C 0.29 8.73 15.32 88.33 1.35 10.08 15 10 N -0.46 -15.33 18.54 19.00 0.35 -14.97 15 11 C -0.03 -1.12 9.51 22.96 0.22 -0.90 15 12 C -0.07 -3.19 5.99 -20.24 -0.12 -3.31 15 13 C 0.01 0.75 5.01 -20.70 -0.10 0.65 15 14 C -0.54 -29.06 8.77 23.18 0.20 -28.86 15 15 H 0.06 3.38 7.96 -2.91 -0.02 3.36 15 16 C 0.02 0.80 4.51 85.11 0.38 1.18 15 17 N -0.82 -45.05 12.37 21.79 0.27 -44.79 15 18 Si 1.11 46.15 30.00 68.60 2.06 48.21 15 19 H -0.27 -11.15 7.11 99.48 0.71 -10.44 15 20 H -0.28 -11.24 7.11 99.48 0.71 -10.54 15 21 H -0.27 -10.27 7.11 99.48 0.71 -9.57 15 22 H 0.11 3.33 8.14 -2.39 -0.02 3.32 15 23 H 0.05 1.72 7.92 -2.39 -0.02 1.70 15 24 H 0.04 1.49 8.11 -2.38 -0.02 1.47 15 25 H 0.16 3.05 8.06 -2.91 -0.02 3.02 15 26 H 0.17 2.63 8.06 -2.91 -0.02 2.61 15 27 H 0.12 4.66 8.02 -2.91 -0.02 4.64 15 28 H 0.27 15.58 7.38 -92.70 -0.68 14.89 15 Total: -1.00 -62.34 273.74 5.99 -56.35 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: 1.29 Total: 4.47 kcal Atomic # 6 Polarization: -38.97 SS G_CDS: 3.99 Total: -34.98 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: 0.62 Total: -59.76 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.73 Total: -14.64 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.06 Total: 48.21 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -1.23 Total: 0.35 kcal Total: -62.34 5.99 -56.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396200557.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.261 kcal (2) G-P(sol) polarization free energy of solvation -62.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds