Wall clock time and date at job start Mon Mar 30 2020 06:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35817 * 116.99812 * 2 1 4 4 C 1.38273 * 119.38522 * 359.97438 * 3 2 1 5 5 C 1.38153 * 121.02207 * 180.02562 * 4 3 2 6 6 C 1.38910 * 120.34001 * 359.97438 * 5 4 3 7 7 C 1.43201 * 120.27158 * 180.02562 * 6 5 4 8 8 N 6.72159 * 115.78410 * 0.02562 * 2 1 3 9 9 C 1.47723 * 119.45899 * 0.02669 * 6 5 4 10 10 C 1.39111 * 128.79973 * 179.97438 * 9 6 5 11 11 C 1.37261 * 115.05915 * 180.02562 * 10 9 6 12 12 C 1.39801 * 124.89785 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99858 * 10.39252 * 12 11 10 14 14 C 1.40301 * 120.00091 * 190.39569 * 12 11 10 15 15 N 1.30686 * 120.00169 * 175.22180 * 14 12 11 16 16 Si 1.86806 * 119.99790 * 355.22010 * 14 12 11 17 17 H 1.48498 * 109.46930 * 180.02562 * 16 14 12 18 18 H 1.48501 * 109.46974 * 300.00084 * 16 14 12 19 19 H 1.48500 * 109.47051 * 60.00115 * 16 14 12 20 20 S 1.75482 * 110.20670 * 0.23750 * 11 10 9 21 21 C 1.40034 * 119.37672 * 180.02562 * 3 2 1 22 22 H 1.08993 * 109.47115 * 300.00073 * 1 2 3 23 23 H 1.09001 * 109.46997 * 60.00154 * 1 2 3 24 24 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 25 25 H 1.07997 * 119.48723 * 0.02562 * 4 3 2 26 26 H 1.08000 * 119.83003 * 180.02562 * 5 4 3 27 27 H 1.08003 * 122.47500 * 0.03776 * 10 9 6 28 28 H 0.97003 * 119.99733 * 359.42864 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0456 1.2102 0.0000 4 6 1.2801 2.3616 -0.0005 5 6 1.8718 3.6100 -0.0011 6 6 3.2557 3.7306 -0.0006 7 6 3.8675 5.0253 -0.0006 8 7 4.3528 6.0524 0.0027 9 6 4.0911 2.5122 0.0000 10 6 5.4782 2.4064 0.0000 11 6 5.9633 1.1224 0.0001 12 6 7.3186 0.7795 -0.0004 13 1 8.0678 1.5389 0.1680 14 6 7.7054 -0.5512 -0.2196 15 7 8.9727 -0.8564 -0.3131 16 14 6.4089 -1.8868 -0.3777 17 1 7.0721 -3.1962 -0.6032 18 1 5.6060 -1.9474 0.8700 19 1 5.5181 -1.5785 -1.5252 20 16 4.6370 -0.0266 -0.0069 21 6 3.4447 1.2683 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2029 2.2839 -0.0005 26 1 1.2553 4.4968 -0.0011 27 1 6.1257 3.2708 0.0003 28 1 9.6456 -0.1616 -0.2392 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396201224.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:46 Heat of formation + Delta-G solvation = 6.713637 kcal Electronic energy + Delta-G solvation = -15956.984895 eV Core-core repulsion = 13256.738031 eV Total energy + Delta-G solvation = -2700.246864 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.47825 -37.45980 -35.64655 -34.94829 -33.35632 -30.12960 -29.42102 -27.33873 -25.30826 -22.91874 -21.87156 -19.46411 -19.34015 -18.06840 -17.31118 -15.92120 -15.43883 -15.19751 -14.87693 -14.38539 -13.70276 -13.32565 -13.21224 -13.00202 -12.55452 -12.50581 -12.30839 -11.90034 -11.79146 -11.47837 -11.24925 -10.85873 -10.80080 -10.57419 -10.28108 -10.01716 -9.90397 -8.94833 -8.20299 -8.03917 -7.84393 -6.66158 -5.01611 1.38590 1.88635 2.27933 2.83152 2.89908 2.98537 3.27437 3.35244 3.51101 3.63837 3.66440 3.68409 4.42933 4.77706 4.84326 5.20509 5.31777 5.42042 5.49343 5.64591 5.79004 6.32967 6.47765 6.63444 6.75248 6.79237 6.92808 7.03941 7.14763 7.40750 7.58725 7.78222 7.82664 8.01312 8.29762 9.31701 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.019185 B = 0.009073 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.091762 B = 3085.319658 C = 4522.167533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.318 6.318 3 C 0.226 3.774 4 C -0.305 4.305 5 C 0.007 3.993 6 C -0.139 4.139 7 C 0.287 3.713 8 N -0.479 5.479 9 C 0.103 3.897 10 C -0.356 4.356 11 C 0.063 3.937 12 C -0.399 4.399 13 H 0.103 0.897 14 C 0.047 3.953 15 N -0.764 5.764 16 Si 0.914 3.086 17 H -0.221 1.221 18 H -0.195 1.195 19 H -0.194 1.194 20 S 0.003 5.997 21 C -0.266 4.266 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.093 0.907 25 H 0.122 0.878 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.798 -4.033 0.064 11.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.176 3.824 4 C -0.326 4.326 5 C -0.015 4.015 6 C -0.145 4.145 7 C -0.024 4.024 8 N -0.157 5.157 9 C 0.093 3.907 10 C -0.379 4.379 11 C -0.056 4.056 12 C -0.433 4.433 13 H 0.120 0.880 14 C -0.181 4.181 15 N -0.383 5.383 16 Si 0.735 3.265 17 H -0.144 1.144 18 H -0.121 1.121 19 H -0.118 1.118 20 S 0.258 5.742 21 C -0.378 4.378 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.111 0.889 25 H 0.140 0.860 26 H 0.135 0.865 27 H 0.133 0.867 28 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.102 -5.735 -0.182 11.617 hybrid contribution 0.079 3.037 0.282 3.052 sum -10.023 -2.697 0.100 10.380 Atomic orbital electron populations 1.22983 0.79097 1.03183 1.01301 1.86066 1.20860 1.28086 1.88023 1.18276 0.89351 0.83614 0.91134 1.20192 0.98583 0.91373 1.22437 1.20317 0.91827 0.96614 0.92784 1.16519 0.91655 0.84432 1.21916 1.25674 0.92508 0.92373 0.91849 1.81097 1.08798 1.12425 1.13381 1.18382 0.92193 0.88957 0.91131 1.19468 0.92023 0.95756 1.30618 1.21462 0.95472 0.94272 0.94423 1.20698 0.91841 0.96993 1.33721 0.87958 1.27607 1.00131 0.99744 0.90596 1.70503 1.01699 1.39635 1.26494 0.84606 0.77136 0.79138 0.85628 1.14379 1.12147 1.11846 1.84673 0.97622 1.08823 1.83110 1.21704 0.93476 0.97552 1.25031 0.92752 0.92756 0.88880 0.86034 0.86458 0.86736 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.79 101.05 0.99 1.32 15 2 O -0.32 -5.38 10.44 -19.17 -0.20 -5.58 15 3 C 0.23 4.27 6.70 -38.90 -0.26 4.01 15 4 C -0.30 -4.98 8.96 -39.60 -0.35 -5.33 15 5 C 0.01 0.13 9.71 -39.36 -0.38 -0.26 15 6 C -0.14 -2.80 5.96 -103.85 -0.62 -3.41 15 7 C 0.29 5.96 15.06 -22.47 -0.34 5.62 15 8 N -0.48 -10.37 18.54 41.84 0.78 -9.60 15 9 C 0.10 2.32 6.00 -104.97 -0.63 1.69 15 10 C -0.36 -8.50 9.77 -39.61 -0.39 -8.89 15 11 C 0.06 1.48 5.96 -39.35 -0.23 1.25 15 12 C -0.40 -9.48 9.71 -38.22 -0.37 -9.85 15 13 H 0.10 2.47 8.06 -52.49 -0.42 2.05 15 14 C 0.05 1.06 5.52 -17.26 -0.10 0.96 15 15 N -0.76 -17.53 13.65 55.57 0.76 -16.77 15 16 Si 0.91 17.58 24.49 -169.99 -4.16 13.41 15 17 H -0.22 -3.99 7.11 56.52 0.40 -3.59 15 18 H -0.20 -3.61 6.29 60.66 0.38 -3.22 15 19 H -0.19 -3.63 6.36 58.97 0.37 -3.26 15 20 S 0.00 0.07 15.25 -107.50 -1.64 -1.57 15 21 C -0.27 -5.79 6.42 -38.18 -0.25 -6.03 15 22 H 0.05 0.54 7.62 -51.93 -0.40 0.15 15 23 H 0.05 0.54 7.62 -51.93 -0.40 0.15 15 24 H 0.09 0.81 8.14 -51.93 -0.42 0.39 15 25 H 0.12 1.57 6.14 -52.49 -0.32 1.25 15 26 H 0.12 1.62 8.06 -52.49 -0.42 1.19 15 27 H 0.11 2.78 8.02 -52.48 -0.42 2.35 15 28 H 0.30 6.55 8.72 -40.82 -0.36 6.19 15 LS Contribution 264.05 15.07 3.98 3.98 Total: -1.00 -25.98 264.05 -5.42 -31.40 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -2.00 Total: 3.65 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -2.93 Total: -18.92 kcal Atomic # 7 Polarization: -27.90 SS G_CDS: 1.53 Total: -26.37 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.20 Total: -5.58 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -4.16 Total: 13.41 kcal Atomic # 16 Polarization: 0.07 SS G_CDS: -1.64 Total: -1.57 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -25.98 -5.42 -31.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396201224.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.116 kcal (2) G-P(sol) polarization free energy of solvation -25.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds