Wall clock time and date at job start Mon Mar 30 2020 06:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35817 * 116.99812 * 2 1 4 4 C 1.38273 * 119.38522 * 359.97438 * 3 2 1 5 5 C 1.38153 * 121.02207 * 180.02562 * 4 3 2 6 6 C 1.38910 * 120.34001 * 359.97438 * 5 4 3 7 7 C 1.43201 * 120.27158 * 180.02562 * 6 5 4 8 8 N 6.72159 * 115.78410 * 0.02562 * 2 1 3 9 9 C 1.47723 * 119.45899 * 0.02669 * 6 5 4 10 10 C 1.39111 * 128.79973 * 179.97438 * 9 6 5 11 11 C 1.37261 * 115.05915 * 180.02562 * 10 9 6 12 12 C 1.39801 * 124.89785 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99858 * 10.39252 * 12 11 10 14 14 C 1.40301 * 120.00091 * 190.39569 * 12 11 10 15 15 N 1.30686 * 120.00169 * 175.22180 * 14 12 11 16 16 Si 1.86806 * 119.99790 * 355.22010 * 14 12 11 17 17 H 1.48498 * 109.46930 * 180.02562 * 16 14 12 18 18 H 1.48501 * 109.46974 * 300.00084 * 16 14 12 19 19 H 1.48500 * 109.47051 * 60.00115 * 16 14 12 20 20 S 1.75482 * 110.20670 * 0.23750 * 11 10 9 21 21 C 1.40034 * 119.37672 * 180.02562 * 3 2 1 22 22 H 1.08993 * 109.47115 * 300.00073 * 1 2 3 23 23 H 1.09001 * 109.46997 * 60.00154 * 1 2 3 24 24 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 25 25 H 1.07997 * 119.48723 * 0.02562 * 4 3 2 26 26 H 1.08000 * 119.83003 * 180.02562 * 5 4 3 27 27 H 1.08003 * 122.47500 * 0.03776 * 10 9 6 28 28 H 0.97003 * 119.99733 * 359.42864 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0456 1.2102 0.0000 4 6 1.2801 2.3616 -0.0005 5 6 1.8718 3.6100 -0.0011 6 6 3.2557 3.7306 -0.0006 7 6 3.8675 5.0253 -0.0006 8 7 4.3528 6.0524 0.0027 9 6 4.0911 2.5122 0.0000 10 6 5.4782 2.4064 0.0000 11 6 5.9633 1.1224 0.0001 12 6 7.3186 0.7795 -0.0004 13 1 8.0678 1.5389 0.1680 14 6 7.7054 -0.5512 -0.2196 15 7 8.9727 -0.8564 -0.3131 16 14 6.4089 -1.8868 -0.3777 17 1 7.0721 -3.1962 -0.6032 18 1 5.6060 -1.9474 0.8700 19 1 5.5181 -1.5785 -1.5252 20 16 4.6370 -0.0266 -0.0069 21 6 3.4447 1.2683 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2029 2.2839 -0.0005 26 1 1.2553 4.4968 -0.0011 27 1 6.1257 3.2708 0.0003 28 1 9.6456 -0.1616 -0.2392 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396201224.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:46 Heat of formation + Delta-G solvation = -8.173998 kcal Electronic energy + Delta-G solvation = -15957.630471 eV Core-core repulsion = 13256.738031 eV Total energy + Delta-G solvation = -2700.892440 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.87007 -38.95118 -37.33696 -36.58056 -34.96869 -31.65392 -30.97766 -28.49109 -26.82729 -24.42883 -23.46413 -21.16200 -20.95293 -19.63845 -18.69937 -17.36949 -16.79677 -16.57832 -16.49154 -15.84677 -15.16188 -14.92220 -14.80347 -14.46161 -14.21195 -14.16492 -13.81087 -13.40371 -13.16805 -12.84660 -12.68362 -12.45886 -12.15680 -12.07737 -11.87868 -11.60652 -11.41703 -10.55517 -9.82096 -9.75351 -9.47177 -8.26171 -6.80784 -0.21113 0.34605 0.70040 1.11543 1.27722 1.40166 1.69038 1.74482 1.93314 2.06078 2.10286 2.45699 2.72516 3.13429 3.26678 4.01482 4.16716 4.28886 4.55235 4.55796 4.67494 4.86091 4.97360 5.02550 5.13789 5.20978 5.24809 5.43050 5.57655 5.68918 5.85887 6.05650 6.29615 6.51466 6.66931 7.58201 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.019185 B = 0.009073 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.091762 B = 3085.319658 C = 4522.167533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.334 6.334 3 C 0.228 3.772 4 C -0.277 4.277 5 C 0.024 3.976 6 C -0.153 4.153 7 C 0.296 3.704 8 N -0.503 5.503 9 C 0.085 3.915 10 C -0.383 4.383 11 C 0.049 3.951 12 C -0.439 4.439 13 H 0.076 0.924 14 C 0.025 3.975 15 N -0.786 5.786 16 Si 0.932 3.068 17 H -0.197 1.197 18 H -0.183 1.183 19 H -0.186 1.186 20 S 0.025 5.975 21 C -0.289 4.289 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.118 0.882 25 H 0.171 0.829 26 H 0.160 0.840 27 H 0.092 0.908 28 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.582 -4.723 0.000 16.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.247 6.247 3 C 0.177 3.823 4 C -0.298 4.298 5 C 0.002 3.998 6 C -0.160 4.160 7 C -0.015 4.015 8 N -0.181 5.181 9 C 0.075 3.925 10 C -0.407 4.407 11 C -0.070 4.070 12 C -0.473 4.473 13 H 0.094 0.906 14 C -0.198 4.198 15 N -0.406 5.406 16 Si 0.748 3.252 17 H -0.119 1.119 18 H -0.109 1.109 19 H -0.111 1.111 20 S 0.279 5.721 21 C -0.401 4.401 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.136 0.864 25 H 0.188 0.812 26 H 0.178 0.822 27 H 0.110 0.890 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.885 -6.424 -0.243 16.214 hybrid contribution 1.144 3.388 0.319 3.590 sum -13.741 -3.035 0.076 14.073 Atomic orbital electron populations 1.23455 0.75729 1.05693 1.02999 1.86060 1.24226 1.27068 1.87317 1.18449 0.88516 0.85442 0.89915 1.20776 1.00819 0.89889 1.18302 1.20836 0.90460 0.98688 0.89818 1.16742 0.93032 0.83096 1.23099 1.25859 0.92033 0.92390 0.91199 1.81098 1.09208 1.13430 1.14372 1.18517 0.91698 0.90599 0.91659 1.19507 0.93127 0.95328 1.32769 1.21547 0.96096 0.95067 0.94275 1.20602 0.91780 0.97436 1.37529 0.90623 1.28555 1.01060 1.00683 0.89458 1.70551 1.01958 1.39388 1.28666 0.84476 0.75985 0.78465 0.86306 1.11922 1.10891 1.11104 1.84398 0.96627 1.08268 1.82765 1.22031 0.95220 0.96992 1.25861 0.90915 0.90913 0.86382 0.81177 0.82215 0.88950 0.89645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.79 113.37 1.11 1.35 15 2 O -0.33 -9.74 10.44 -91.49 -0.96 -10.70 15 3 C 0.23 7.64 6.70 22.71 0.15 7.80 15 4 C -0.28 -7.35 8.96 22.26 0.20 -7.15 15 5 C 0.02 0.69 9.71 22.41 0.22 0.91 15 6 C -0.15 -5.86 5.96 -19.36 -0.12 -5.98 15 7 C 0.30 12.02 15.06 88.33 1.33 13.36 15 8 N -0.50 -21.63 18.54 19.00 0.35 -21.28 15 9 C 0.08 3.81 6.00 -20.09 -0.12 3.69 15 10 C -0.38 -19.29 9.77 22.25 0.22 -19.07 15 11 C 0.05 2.43 5.96 22.42 0.13 2.56 15 12 C -0.44 -22.53 9.71 23.15 0.22 -22.31 15 13 H 0.08 4.09 8.06 -2.91 -0.02 4.06 15 14 C 0.03 1.19 5.52 85.37 0.47 1.66 15 15 N -0.79 -37.94 13.65 21.89 0.30 -37.64 15 16 Si 0.93 35.26 24.49 68.60 1.68 36.94 15 17 H -0.20 -6.72 7.11 99.48 0.71 -6.02 15 18 H -0.18 -6.53 6.29 96.85 0.61 -5.92 15 19 H -0.19 -6.79 6.36 97.92 0.62 -6.17 15 20 S 0.02 1.06 15.25 -56.49 -0.86 0.20 15 21 C -0.29 -12.12 6.42 23.18 0.15 -11.97 15 22 H 0.07 0.96 7.62 -2.39 -0.02 0.94 15 23 H 0.07 0.96 7.62 -2.39 -0.02 0.94 15 24 H 0.12 1.38 8.14 -2.39 -0.02 1.36 15 25 H 0.17 2.95 6.14 -2.91 -0.02 2.93 15 26 H 0.16 3.31 8.06 -2.91 -0.02 3.29 15 27 H 0.09 4.87 8.02 -2.91 -0.02 4.85 15 28 H 0.29 13.86 8.72 -92.71 -0.81 13.05 15 Total: -1.00 -59.78 264.05 5.47 -54.31 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.99 Total: 13.31 kcal Atomic # 6 Polarization: -39.12 SS G_CDS: 3.97 Total: -35.15 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.65 Total: -58.92 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -0.96 Total: -10.70 kcal Atomic # 14 Polarization: 35.26 SS G_CDS: 1.68 Total: 36.94 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -0.86 Total: 0.20 kcal Total: -59.78 5.47 -54.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396201224.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.139 kcal (2) G-P(sol) polarization free energy of solvation -59.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds