Wall clock time and date at job start Mon Mar 30 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35623 * 117.00029 * 2 1 4 4 C 1.37990 * 120.02884 * 0.02562 * 3 2 1 5 5 C 1.39550 * 120.62922 * 179.97438 * 4 3 2 6 6 S 1.76072 * 129.96462 * 180.02562 * 5 4 3 7 7 C 1.75431 * 91.82285 * 180.02562 * 6 5 4 8 8 C 1.39861 * 124.79344 * 179.97438 * 7 6 5 9 9 H 1.07995 * 120.00154 * 194.18459 * 8 7 6 10 10 C 1.40127 * 119.99792 * 14.18189 * 8 7 6 11 11 N 1.30793 * 119.99905 * 199.90664 * 10 8 7 12 12 Si 1.86804 * 120.00058 * 19.90467 * 10 8 7 13 13 H 1.48501 * 109.47019 * 269.99988 * 12 10 8 14 14 H 1.48503 * 109.47019 * 29.99917 * 12 10 8 15 15 H 1.48492 * 109.46994 * 149.99945 * 12 10 8 16 16 C 1.36907 * 110.41443 * 0.23335 * 7 6 5 17 17 C 1.39857 * 115.05416 * 359.58388 * 16 7 6 18 18 C 1.41548 * 128.28701 * 180.15072 * 17 16 7 19 19 C 1.38481 * 120.31989 * 180.26763 * 18 17 16 20 20 C 1.43200 * 119.96880 * 180.02562 * 19 18 17 21 21 N 3.53048 * 165.71434 * 180.02562 * 2 1 3 22 22 H 1.09003 * 109.46767 * 60.00104 * 1 2 3 23 23 H 1.08996 * 109.47430 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46963 * 300.00270 * 1 2 3 25 25 H 1.07998 * 119.68097 * 0.02562 * 4 3 2 26 26 H 0.97000 * 120.00521 * 354.77204 * 11 10 8 27 27 H 1.08002 * 122.46901 * 179.76865 * 16 7 6 28 28 H 1.07998 * 119.84185 * 0.28967 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2084 0.0000 4 6 1.2938 2.3661 0.0005 5 6 1.9143 3.6160 0.0011 6 16 1.2084 5.2291 0.0024 7 6 2.7924 5.9832 0.0014 8 6 3.0192 7.3632 0.0014 9 1 4.0014 7.7490 -0.2284 10 6 1.9721 8.2454 0.2994 11 7 2.0488 9.4988 -0.0662 12 14 0.4664 7.6312 1.2189 13 1 -0.5465 7.1509 0.2449 14 1 0.8565 6.5155 2.1180 15 1 -0.1075 8.7387 2.0245 16 6 3.7751 5.0299 -0.0050 17 6 3.3181 3.7081 -0.0001 18 6 4.0816 2.5162 -0.0018 19 6 3.4520 1.2828 -0.0017 20 6 4.2318 0.0817 -0.0028 21 7 4.8504 -0.8712 -0.0004 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.2156 2.3041 0.0014 26 1 2.8610 9.8358 -0.4756 27 1 4.8256 5.2803 -0.0104 28 1 5.1602 2.5690 -0.0027 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396201239.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:04 Heat of formation + Delta-G solvation = 8.582395 kcal Electronic energy + Delta-G solvation = -15773.144998 eV Core-core repulsion = 13072.979170 eV Total energy + Delta-G solvation = -2700.165829 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.72076 -37.50150 -36.17428 -34.89653 -33.06832 -30.69517 -29.37412 -27.41681 -24.97789 -23.72558 -21.35463 -20.11365 -19.11756 -18.24197 -17.14542 -16.06933 -15.53374 -15.50525 -14.50243 -14.27761 -13.88431 -13.47475 -13.38026 -13.07070 -12.85468 -12.54061 -12.32722 -12.00828 -11.83068 -11.56865 -11.34730 -11.15520 -10.82572 -10.67267 -10.26773 -9.84729 -9.53347 -9.17568 -8.89846 -7.95889 -7.55844 -6.90683 -4.85765 1.29542 1.64635 2.22251 2.75940 2.90550 2.99686 3.09636 3.19607 3.34994 3.56343 3.60776 3.65666 4.35526 4.38548 4.70579 5.16929 5.27829 5.29955 5.56461 5.77300 5.93142 6.06099 6.14424 6.41524 6.69476 6.84787 6.92414 7.13018 7.16554 7.39981 7.64833 7.73686 7.85542 7.94985 8.14281 9.41025 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.033204 B = 0.006254 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.057307 B = 4476.275989 C = 5209.600210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.319 6.319 3 C 0.093 3.907 4 C -0.139 4.139 5 C -0.158 4.158 6 S -0.014 6.014 7 C 0.060 3.940 8 C -0.436 4.436 9 H 0.100 0.900 10 C 0.045 3.955 11 N -0.771 5.771 12 Si 0.972 3.028 13 H -0.234 1.234 14 H -0.222 1.222 15 H -0.242 1.242 16 C -0.358 4.358 17 C 0.004 3.996 18 C -0.066 4.066 19 C -0.039 4.039 20 C 0.281 3.719 21 N -0.450 5.450 22 H 0.053 0.947 23 H 0.093 0.907 24 H 0.053 0.947 25 H 0.123 0.877 26 H 0.296 0.704 27 H 0.117 0.883 28 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.275 -5.483 1.072 7.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.234 6.234 3 C 0.044 3.956 4 C -0.163 4.163 5 C -0.273 4.273 6 S 0.245 5.755 7 C -0.057 4.057 8 C -0.469 4.469 9 H 0.118 0.882 10 C -0.182 4.182 11 N -0.391 5.391 12 Si 0.793 3.207 13 H -0.160 1.160 14 H -0.145 1.145 15 H -0.166 1.166 16 C -0.382 4.382 17 C -0.003 4.003 18 C -0.089 4.089 19 C -0.045 4.045 20 C -0.033 4.033 21 N -0.127 5.127 22 H 0.072 0.928 23 H 0.111 0.889 24 H 0.072 0.928 25 H 0.141 0.859 26 H 0.109 0.891 27 H 0.135 0.865 28 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.063 -5.991 1.592 9.397 hybrid contribution 2.486 -0.210 -0.733 2.600 sum -4.577 -6.200 0.859 7.754 Atomic orbital electron populations 1.22960 0.79007 1.03188 1.01334 1.85949 1.20818 1.26866 1.89724 1.18097 0.89753 0.83832 1.03923 1.20079 0.98650 0.89639 1.07967 1.22433 0.96397 0.96376 1.12048 1.84117 1.11731 0.97451 1.82241 1.21175 0.91668 0.96746 0.96147 1.20331 1.00019 0.89746 1.36817 0.88230 1.27483 1.03085 0.93764 0.93838 1.70511 1.29069 1.16142 1.23344 0.84316 0.75449 0.80022 0.80932 1.15956 1.14546 1.16648 1.19498 0.98310 0.89101 1.31267 1.17852 0.90966 0.93405 0.98119 1.20684 0.98797 0.88617 1.00777 1.14913 0.88092 0.87552 1.13957 1.25585 0.92510 0.92577 0.92599 1.81113 1.10038 1.10667 1.10882 0.92819 0.88877 0.92820 0.85911 0.89143 0.86501 0.85487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.80 101.05 0.99 1.33 15 2 O -0.32 -5.09 9.92 -18.57 -0.18 -5.28 15 3 C 0.09 1.61 6.69 -38.66 -0.26 1.36 15 4 C -0.14 -2.45 9.04 -39.18 -0.35 -2.80 15 5 C -0.16 -3.20 6.47 -38.17 -0.25 -3.44 15 6 S -0.01 -0.28 16.95 -107.50 -1.82 -2.10 15 7 C 0.06 1.38 5.69 -39.46 -0.22 1.16 15 8 C -0.44 -10.24 9.61 -38.27 -0.37 -10.61 15 9 H 0.10 2.37 8.06 -52.49 -0.42 1.95 15 10 C 0.04 1.01 5.50 -17.29 -0.10 0.92 15 11 N -0.77 -17.84 13.65 55.56 0.76 -17.09 15 12 Si 0.97 18.92 24.75 -169.99 -4.21 14.71 15 13 H -0.23 -4.33 6.84 56.52 0.39 -3.94 15 14 H -0.22 -4.24 6.55 56.52 0.37 -3.87 15 15 H -0.24 -4.47 7.11 56.52 0.40 -4.07 15 16 C -0.36 -7.94 10.13 -39.46 -0.40 -8.34 15 17 C 0.00 0.08 5.85 -107.11 -0.63 -0.54 15 18 C -0.07 -1.20 9.77 -38.23 -0.37 -1.57 15 19 C -0.04 -0.69 5.73 -106.87 -0.61 -1.31 15 20 C 0.28 5.10 14.84 -22.47 -0.33 4.76 15 21 N -0.45 -8.57 18.54 41.84 0.78 -7.79 15 22 H 0.05 0.56 7.65 -51.93 -0.40 0.16 15 23 H 0.09 0.82 8.14 -51.93 -0.42 0.39 15 24 H 0.05 0.56 7.65 -51.93 -0.40 0.16 15 25 H 0.12 1.84 6.23 -52.49 -0.33 1.51 15 26 H 0.30 6.57 8.73 -40.82 -0.36 6.22 15 27 H 0.12 2.50 8.06 -52.49 -0.42 2.07 15 28 H 0.13 2.05 8.06 -52.49 -0.42 1.63 15 LS Contribution 266.00 15.07 4.01 4.01 Total: -1.00 -24.84 266.00 -5.58 -30.42 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -2.01 Total: 2.22 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -2.90 Total: -19.10 kcal Atomic # 7 Polarization: -26.41 SS G_CDS: 1.53 Total: -24.88 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.18 Total: -5.28 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.21 Total: 14.71 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -1.82 Total: -2.10 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -24.84 -5.58 -30.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396201239.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.004 kcal (2) G-P(sol) polarization free energy of solvation -24.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds