Wall clock time and date at job start Mon Mar 30 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35623 * 117.00029 * 2 1 4 4 C 1.37990 * 120.02884 * 0.02562 * 3 2 1 5 5 C 1.39550 * 120.62922 * 179.97438 * 4 3 2 6 6 S 1.76072 * 129.96462 * 180.02562 * 5 4 3 7 7 C 1.75431 * 91.82285 * 180.02562 * 6 5 4 8 8 C 1.39861 * 124.79344 * 179.97438 * 7 6 5 9 9 H 1.07995 * 120.00154 * 194.18459 * 8 7 6 10 10 C 1.40127 * 119.99792 * 14.18189 * 8 7 6 11 11 N 1.30793 * 119.99905 * 199.90664 * 10 8 7 12 12 Si 1.86804 * 120.00058 * 19.90467 * 10 8 7 13 13 H 1.48501 * 109.47019 * 269.99988 * 12 10 8 14 14 H 1.48503 * 109.47019 * 29.99917 * 12 10 8 15 15 H 1.48492 * 109.46994 * 149.99945 * 12 10 8 16 16 C 1.36907 * 110.41443 * 0.23335 * 7 6 5 17 17 C 1.39857 * 115.05416 * 359.58388 * 16 7 6 18 18 C 1.41548 * 128.28701 * 180.15072 * 17 16 7 19 19 C 1.38481 * 120.31989 * 180.26763 * 18 17 16 20 20 C 1.43200 * 119.96880 * 180.02562 * 19 18 17 21 21 N 3.53048 * 165.71434 * 180.02562 * 2 1 3 22 22 H 1.09003 * 109.46767 * 60.00104 * 1 2 3 23 23 H 1.08996 * 109.47430 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46963 * 300.00270 * 1 2 3 25 25 H 1.07998 * 119.68097 * 0.02562 * 4 3 2 26 26 H 0.97000 * 120.00521 * 354.77204 * 11 10 8 27 27 H 1.08002 * 122.46901 * 179.76865 * 16 7 6 28 28 H 1.07998 * 119.84185 * 0.28967 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2084 0.0000 4 6 1.2938 2.3661 0.0005 5 6 1.9143 3.6160 0.0011 6 16 1.2084 5.2291 0.0024 7 6 2.7924 5.9832 0.0014 8 6 3.0192 7.3632 0.0014 9 1 4.0014 7.7490 -0.2284 10 6 1.9721 8.2454 0.2994 11 7 2.0488 9.4988 -0.0662 12 14 0.4664 7.6312 1.2189 13 1 -0.5465 7.1509 0.2449 14 1 0.8565 6.5155 2.1180 15 1 -0.1075 8.7387 2.0245 16 6 3.7751 5.0299 -0.0050 17 6 3.3181 3.7081 -0.0001 18 6 4.0816 2.5162 -0.0018 19 6 3.4520 1.2828 -0.0017 20 6 4.2318 0.0817 -0.0028 21 7 4.8504 -0.8712 -0.0004 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.2156 2.3041 0.0014 26 1 2.8610 9.8358 -0.4756 27 1 4.8256 5.2803 -0.0104 28 1 5.1602 2.5690 -0.0027 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396201239.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:04 Heat of formation + Delta-G solvation = -4.267153 kcal Electronic energy + Delta-G solvation = -15773.702196 eV Core-core repulsion = 13072.979170 eV Total energy + Delta-G solvation = -2700.723027 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.11430 -38.92497 -37.67190 -36.51652 -34.65097 -32.18646 -30.90457 -28.53796 -26.49143 -25.24233 -22.83993 -21.70219 -20.78175 -19.62906 -18.63931 -17.51262 -17.09411 -16.66773 -16.02688 -15.76031 -15.21886 -14.89522 -14.87386 -14.54865 -14.39530 -14.09363 -13.89882 -13.46865 -13.28451 -12.89816 -12.65902 -12.52500 -12.31587 -12.14819 -11.81407 -11.43458 -11.10680 -10.72789 -10.41945 -9.66208 -9.12754 -8.48757 -6.58887 -0.19764 0.09949 0.65168 1.14779 1.26621 1.43232 1.64379 1.66718 1.83128 2.06267 2.12278 2.37858 2.76378 2.91070 3.06833 3.86782 4.22571 4.44257 4.48598 4.49458 4.56158 4.72103 4.80800 4.91503 5.17106 5.20427 5.29251 5.42793 5.57407 5.76956 5.95692 6.14645 6.37152 6.47733 6.53903 7.70680 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.033204 B = 0.006254 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.057307 B = 4476.275989 C = 5209.600210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.330 6.330 3 C 0.119 3.881 4 C -0.142 4.142 5 C -0.160 4.160 6 S 0.007 5.993 7 C 0.037 3.963 8 C -0.475 4.475 9 H 0.075 0.925 10 C 0.021 3.979 11 N -0.798 5.798 12 Si 0.990 3.010 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.226 1.226 16 C -0.364 4.364 17 C -0.024 4.024 18 C -0.049 4.049 19 C -0.046 4.046 20 C 0.294 3.706 21 N -0.464 5.464 22 H 0.066 0.934 23 H 0.120 0.880 24 H 0.067 0.933 25 H 0.154 0.846 26 H 0.290 0.710 27 H 0.113 0.887 28 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.079 -8.319 1.413 11.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.069 3.931 4 C -0.166 4.166 5 C -0.275 4.275 6 S 0.265 5.735 7 C -0.080 4.080 8 C -0.509 4.509 9 H 0.093 0.907 10 C -0.200 4.200 11 N -0.418 5.418 12 Si 0.805 3.195 13 H -0.141 1.141 14 H -0.141 1.141 15 H -0.149 1.149 16 C -0.389 4.389 17 C -0.031 4.031 18 C -0.072 4.072 19 C -0.053 4.053 20 C -0.020 4.020 21 N -0.141 5.141 22 H 0.084 0.916 23 H 0.139 0.861 24 H 0.085 0.915 25 H 0.172 0.828 26 H 0.102 0.898 27 H 0.131 0.869 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.866 -8.826 1.923 12.657 hybrid contribution 3.074 0.231 -0.870 3.203 sum -5.792 -8.595 1.053 10.417 Atomic orbital electron populations 1.23382 0.76187 1.05596 1.02568 1.85973 1.23687 1.25786 1.88978 1.18227 0.89644 0.84585 1.00665 1.20321 1.00310 0.88339 1.07632 1.22723 0.96347 0.97096 1.11318 1.83890 1.10101 0.97568 1.81959 1.21292 0.93308 0.96691 0.96676 1.20217 0.99643 0.90642 1.40415 0.90689 1.28382 1.04710 0.93450 0.93483 1.70566 1.29091 1.16729 1.25456 0.84189 0.73890 0.80508 0.80908 1.14134 1.14101 1.14947 1.19696 0.98261 0.90091 1.30814 1.17934 0.91762 0.93377 1.00054 1.20842 0.99748 0.87948 0.98622 1.14970 0.88639 0.87243 1.14402 1.25475 0.92125 0.92311 0.92129 1.81140 1.10408 1.11166 1.11408 0.91561 0.86147 0.91488 0.82809 0.89824 0.86930 0.83679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.80 113.37 1.11 1.40 15 2 O -0.33 -9.06 9.92 -89.36 -0.89 -9.95 15 3 C 0.12 3.67 6.69 22.87 0.15 3.82 15 4 C -0.14 -4.43 9.04 22.53 0.20 -4.23 15 5 C -0.16 -6.09 6.47 23.18 0.15 -5.94 15 6 S 0.01 0.26 16.95 -56.49 -0.96 -0.69 15 7 C 0.04 1.75 5.69 22.35 0.13 1.88 15 8 C -0.48 -23.52 9.61 23.12 0.22 -23.30 15 9 H 0.08 3.90 8.06 -2.91 -0.02 3.87 15 10 C 0.02 0.98 5.50 85.31 0.47 1.45 15 11 N -0.80 -38.50 13.65 21.86 0.30 -38.20 15 12 Si 0.99 37.50 24.75 68.60 1.70 39.20 15 13 H -0.22 -7.55 6.84 99.48 0.68 -6.87 15 14 H -0.22 -8.01 6.55 99.48 0.65 -7.36 15 15 H -0.23 -7.93 7.11 99.48 0.71 -7.23 15 16 C -0.36 -16.31 10.13 22.35 0.23 -16.08 15 17 C -0.02 -0.96 5.85 -21.47 -0.13 -1.08 15 18 C -0.05 -1.67 9.77 23.14 0.23 -1.45 15 19 C -0.05 -1.51 5.73 -21.32 -0.12 -1.63 15 20 C 0.29 9.79 14.84 88.33 1.31 11.10 15 21 N -0.46 -16.49 18.54 19.00 0.35 -16.14 15 22 H 0.07 1.04 7.65 -2.39 -0.02 1.02 15 23 H 0.12 1.50 8.14 -2.39 -0.02 1.48 15 24 H 0.07 1.04 7.65 -2.39 -0.02 1.02 15 25 H 0.15 3.82 6.23 -2.91 -0.02 3.80 15 26 H 0.29 13.74 8.73 -92.71 -0.81 12.93 15 27 H 0.11 4.97 8.06 -2.91 -0.02 4.94 15 28 H 0.15 4.37 8.06 -2.91 -0.02 4.34 15 Total: -1.00 -53.44 266.00 5.54 -47.90 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 1.09 Total: 11.95 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 3.95 Total: -34.06 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.65 Total: -54.35 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.89 Total: -9.95 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 1.70 Total: 39.20 kcal Atomic # 16 Polarization: 0.26 SS G_CDS: -0.96 Total: -0.69 kcal Total: -53.44 5.54 -47.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396201239.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.634 kcal (2) G-P(sol) polarization free energy of solvation -53.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds