Wall clock time and date at job start Mon Mar 30 2020 06:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35764 * 117.00122 * 2 1 4 4 C 1.39872 * 119.97182 * 89.99763 * 3 2 1 5 5 S 1.76015 * 130.10343 * 0.02562 * 4 3 2 6 6 C 1.75465 * 91.74770 * 179.97438 * 5 4 3 7 7 C 1.39851 * 124.86143 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00023 * 190.65038 * 7 6 5 9 9 C 1.40281 * 119.99974 * 10.65638 * 7 6 5 10 10 N 1.30691 * 120.00085 * 174.74357 * 9 7 6 11 11 Si 1.86802 * 119.99887 * 354.73826 * 9 7 6 12 12 H 1.48497 * 109.46998 * 180.02562 * 11 9 7 13 13 H 1.48502 * 109.47050 * 300.00341 * 11 9 7 14 14 H 1.48500 * 109.46918 * 60.00089 * 11 9 7 15 15 C 1.37123 * 110.27493 * 0.26289 * 6 5 4 16 16 C 1.39534 * 115.08004 * 359.52483 * 15 6 5 17 17 C 1.42398 * 128.23403 * 180.17481 * 16 15 6 18 18 C 1.35302 * 120.85076 * 180.32722 * 17 16 15 19 19 C 1.39698 * 119.97958 * 270.02340 * 3 2 1 20 20 C 1.43193 * 120.10000 * 359.97438 * 19 3 2 21 21 N 3.52207 * 95.72653 * 281.36577 * 2 1 3 22 22 H 1.08998 * 109.47249 * 179.97438 * 1 2 3 23 23 H 1.08990 * 109.46744 * 299.99960 * 1 2 3 24 24 H 1.09008 * 109.46744 * 59.99751 * 1 2 3 25 25 H 0.97002 * 120.00052 * 359.82995 * 10 9 7 26 26 H 1.08001 * 122.45744 * 179.71575 * 15 6 5 27 27 H 1.07997 * 119.57636 * 0.30969 * 17 16 15 28 28 H 1.07994 * 119.73229 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 6 2.3627 1.8323 1.2117 5 16 2.0908 1.2976 2.8665 6 6 2.8314 2.7503 3.5145 7 6 2.9762 3.0347 4.8761 8 1 3.2846 4.0202 5.1921 9 6 2.7210 2.0396 5.8314 10 7 2.9545 2.2726 7.0960 11 14 2.0472 0.3816 5.2960 12 1 1.8656 -0.4867 6.4868 13 1 0.7391 0.5739 4.6199 14 1 3.0009 -0.2599 4.3557 15 6 3.2420 3.5698 2.4946 16 6 2.9996 3.0822 1.2099 17 6 3.3103 3.6936 -0.0380 18 6 2.9993 3.0847 -1.2055 19 6 2.3620 1.8318 -1.2101 20 6 2.0377 1.1954 -2.4512 21 7 1.7805 0.6906 -3.4358 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3632 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 3.3066 3.1327 7.3738 26 1 3.7207 4.5214 2.6727 27 1 3.8003 4.6559 -0.0527 28 1 3.2429 3.5651 -2.1416 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396201341.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:49 Heat of formation + Delta-G solvation = -6.198194 kcal Electronic energy + Delta-G solvation = -16065.154706 eV Core-core repulsion = 13364.347943 eV Total energy + Delta-G solvation = -2700.806763 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.93713 -38.77021 -37.57682 -36.64207 -34.93861 -31.49321 -31.19846 -28.03387 -27.51501 -24.48505 -23.20141 -21.21346 -20.90424 -20.08483 -18.28413 -17.56882 -17.06813 -16.63968 -16.27175 -15.70533 -15.17283 -14.97731 -14.74053 -14.53036 -14.35270 -14.27987 -13.70916 -13.51060 -13.18317 -12.97256 -12.77075 -12.47732 -12.17225 -11.98187 -11.67495 -11.49429 -11.15663 -10.55688 -10.17681 -9.74197 -9.48064 -8.41310 -6.74073 -0.36359 0.42310 0.65607 1.04688 1.15509 1.39213 1.53481 1.70131 1.89416 2.09211 2.19504 2.56771 2.81841 3.09350 3.16355 4.12193 4.27462 4.38303 4.45097 4.50421 4.55925 4.70275 4.90353 5.08136 5.18633 5.24401 5.32099 5.45359 5.65368 5.77767 5.91744 6.14357 6.32450 6.42028 6.60248 7.63334 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.031960 B = 0.007412 C = 0.006144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.892699 B = 3776.850067 C = 4556.517793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.357 6.357 3 C 0.212 3.788 4 C -0.276 4.276 5 S 0.006 5.994 6 C 0.046 3.954 7 C -0.437 4.437 8 H 0.086 0.914 9 C 0.025 3.975 10 N -0.789 5.789 11 Si 0.929 3.071 12 H -0.202 1.202 13 H -0.185 1.185 14 H -0.192 1.192 15 C -0.369 4.369 16 C 0.048 3.952 17 C -0.154 4.154 18 C -0.031 4.031 19 C -0.147 4.147 20 C 0.297 3.703 21 N -0.481 5.481 22 H 0.119 0.881 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.294 0.706 26 H 0.120 0.880 27 H 0.146 0.854 28 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.914 -0.878 -5.022 5.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.161 3.839 4 C -0.388 4.388 5 S 0.261 5.739 6 C -0.072 4.072 7 C -0.471 4.471 8 H 0.104 0.896 9 C -0.198 4.198 10 N -0.409 5.409 11 Si 0.746 3.254 12 H -0.124 1.124 13 H -0.111 1.111 14 H -0.117 1.117 15 C -0.393 4.393 16 C 0.040 3.960 17 C -0.174 4.174 18 C -0.053 4.053 19 C -0.153 4.153 20 C -0.015 4.015 21 N -0.159 5.159 22 H 0.137 0.863 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.106 0.894 26 H 0.138 0.862 27 H 0.164 0.836 28 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.289 -4.441 -5.225 8.088 hybrid contribution 1.290 3.451 -0.203 3.690 sum -2.999 -0.990 -5.427 6.279 Atomic orbital electron populations 1.23193 0.76817 1.04936 1.01070 1.85868 1.21793 1.25264 1.94472 1.17907 0.92954 0.83707 0.89327 1.23042 1.17052 1.01501 0.97184 1.84569 1.66912 1.24274 0.98102 1.21608 0.94680 0.94002 0.96944 1.20598 1.35358 1.00615 0.90555 0.89603 1.28347 0.92306 1.06794 0.92326 1.70547 1.26407 1.26817 1.17091 0.84469 0.83793 0.74044 0.83052 1.12398 1.11102 1.11652 1.19815 1.23933 1.05572 0.89949 1.18321 0.91881 0.91223 0.94572 1.20738 1.05475 1.01799 0.89381 1.20472 0.94510 0.91091 0.99220 1.15837 1.16403 0.98448 0.84642 1.25473 0.91844 0.91979 0.92204 1.81137 1.12345 1.10132 1.12241 0.86252 0.92917 0.93422 0.89412 0.86240 0.83592 0.82480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 11.13 113.37 1.26 2.18 15 2 O -0.36 -12.73 9.79 -90.91 -0.89 -13.63 15 3 C 0.21 7.93 5.75 23.02 0.13 8.07 15 4 C -0.28 -11.28 6.42 23.16 0.15 -11.13 15 5 S 0.01 0.25 15.27 -56.49 -0.86 -0.61 15 6 C 0.05 2.10 5.95 22.40 0.13 2.23 15 7 C -0.44 -20.64 9.70 23.16 0.22 -20.41 15 8 H 0.09 4.17 8.06 -2.91 -0.02 4.14 15 9 C 0.03 1.14 5.52 85.36 0.47 1.61 15 10 N -0.79 -36.33 13.65 21.89 0.30 -36.04 15 11 Si 0.93 34.45 24.49 68.60 1.68 36.13 15 12 H -0.20 -6.87 7.11 99.48 0.71 -6.16 15 13 H -0.19 -6.41 6.31 97.19 0.61 -5.80 15 14 H -0.19 -7.01 6.34 97.73 0.62 -6.39 15 15 C -0.37 -16.12 10.13 22.32 0.23 -15.90 15 16 C 0.05 1.93 5.85 -21.43 -0.13 1.81 15 17 C -0.15 -4.95 10.00 22.63 0.23 -4.73 15 18 C -0.03 -0.91 9.65 22.16 0.21 -0.70 15 19 C -0.15 -4.94 5.76 -21.11 -0.12 -5.07 15 20 C 0.30 10.08 14.85 88.33 1.31 11.39 15 21 N -0.48 -17.23 18.54 19.00 0.35 -16.88 15 22 H 0.12 2.57 8.14 -2.39 -0.02 2.55 15 23 H 0.05 1.45 8.14 -2.39 -0.02 1.43 15 24 H 0.05 1.26 8.14 -2.38 -0.02 1.24 15 25 H 0.29 13.14 8.72 -92.71 -0.81 12.34 15 26 H 0.12 5.01 8.06 -2.91 -0.02 4.99 15 27 H 0.15 3.86 8.06 -2.91 -0.02 3.84 15 28 H 0.16 3.43 8.06 -2.91 -0.02 3.40 15 Total: -1.00 -51.74 267.60 5.66 -46.08 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.98 Total: 15.58 kcal Atomic # 6 Polarization: -34.74 SS G_CDS: 4.10 Total: -30.64 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.65 Total: -52.92 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.89 Total: -13.63 kcal Atomic # 14 Polarization: 34.45 SS G_CDS: 1.68 Total: 36.13 kcal Atomic # 16 Polarization: 0.25 SS G_CDS: -0.86 Total: -0.61 kcal Total: -51.74 5.66 -46.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396201341.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.883 kcal (2) G-P(sol) polarization free energy of solvation -51.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds