Wall clock time and date at job start Mon Mar 30 2020 06:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35551 * 116.99832 * 2 1 4 4 C 1.33688 * 124.72570 * 179.97438 * 3 2 1 5 5 C 1.39755 * 115.65658 * 180.02562 * 4 3 2 6 6 C 1.39727 * 112.78305 * 359.97438 * 5 4 3 7 7 S 1.75511 * 124.72734 * 0.02562 * 3 2 1 8 8 C 1.40838 * 119.86344 * 179.97438 * 6 5 4 9 9 C 1.43199 * 119.46388 * 180.02562 * 8 6 5 10 10 N 6.68401 * 86.72429 * 0.02562 * 2 1 3 11 11 C 1.40001 * 121.07490 * 0.02562 * 8 6 5 12 12 C 1.35862 * 121.08499 * 359.97438 * 11 8 6 13 13 C 1.40720 * 120.48112 * 0.24924 * 12 11 8 14 14 C 1.40108 * 120.27078 * 179.74740 * 13 12 11 15 15 H 1.08000 * 120.00476 * 205.12796 * 14 13 12 16 16 C 1.40206 * 119.99972 * 25.11866 * 14 13 12 17 17 N 1.30715 * 119.99865 * 17.87038 * 16 14 13 18 18 Si 1.86794 * 120.00379 * 197.86728 * 16 14 13 19 19 H 1.48497 * 109.47111 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47539 * 120.00148 * 18 16 14 21 21 H 1.48508 * 109.47290 * 240.00107 * 18 16 14 22 22 H 1.09001 * 109.46947 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47266 * 299.99995 * 1 2 3 24 24 H 1.08999 * 109.47149 * 60.00196 * 1 2 3 25 25 H 1.07995 * 122.17144 * 0.02562 * 4 3 2 26 26 H 1.08002 * 119.45796 * 179.97438 * 11 8 6 27 27 H 1.07994 * 119.76419 * 179.97438 * 12 11 8 28 28 H 0.97001 * 119.99918 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2078 0.0000 4 6 3.3691 1.3875 0.0005 5 6 3.7993 2.7172 0.0010 6 6 2.7402 3.6286 0.0002 7 16 1.2130 2.7535 0.0006 8 6 3.0053 5.0118 0.0011 9 6 1.9134 5.9383 0.0009 10 7 1.0471 6.6731 0.0030 11 6 4.3190 5.4958 0.0022 12 6 5.3795 4.6466 0.0029 13 6 5.1786 3.2538 -0.0027 14 6 6.2754 2.3820 -0.0072 15 1 6.1710 1.3848 -0.4084 16 6 7.5087 2.8044 0.5089 17 7 7.5653 3.8460 1.2966 18 14 9.0709 1.8786 0.0709 19 1 8.7388 0.7453 -0.8293 20 1 10.0145 2.7969 -0.6159 21 1 9.7014 1.3573 1.3104 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 4.0618 0.5590 0.0005 26 1 4.4923 6.5619 0.0024 27 1 6.3839 5.0432 0.0033 28 1 8.4185 4.1379 1.6540 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396202266.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:48 Heat of formation + Delta-G solvation = 22.980626 kcal Electronic energy + Delta-G solvation = -15856.280433 eV Core-core repulsion = 13156.738959 eV Total energy + Delta-G solvation = -2699.541474 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.66717 -37.95589 -35.62137 -34.62656 -33.33648 -30.31938 -28.46595 -26.87287 -25.60635 -22.88738 -21.87207 -19.92039 -18.53414 -17.91736 -16.49611 -15.76783 -15.41684 -15.32492 -15.14816 -13.87469 -13.59282 -13.20018 -13.15763 -12.66049 -12.27036 -12.18756 -11.96013 -11.89479 -11.79372 -11.43783 -11.28376 -11.03108 -10.83894 -10.39625 -10.09694 -9.86087 -9.80410 -9.43110 -8.40981 -7.48145 -7.31872 -6.97364 -4.80539 1.78260 2.02796 2.07361 2.55235 2.75654 2.80190 2.86281 3.35014 3.50917 3.65665 3.73428 3.81629 4.40153 5.19047 5.22528 5.28691 5.33053 5.57849 5.97700 6.10075 6.30325 6.46378 6.59692 6.71184 6.87263 7.01876 7.27035 7.41594 7.53997 7.61792 7.70050 8.03499 8.21668 8.35652 8.56467 9.47246 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.018354 B = 0.007800 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.225356 B = 3588.934807 C = 5027.666771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.289 6.289 3 C -0.045 4.045 4 C -0.102 4.102 5 C -0.163 4.163 6 C -0.030 4.030 7 S 0.006 5.994 8 C -0.176 4.176 9 C 0.283 3.717 10 N -0.503 5.503 11 C -0.013 4.013 12 C -0.192 4.192 13 C 0.163 3.837 14 C -0.393 4.393 15 H 0.097 0.903 16 C 0.068 3.932 17 N -0.739 5.739 18 Si 0.921 3.079 19 H -0.252 1.252 20 H -0.264 1.264 21 H -0.267 1.267 22 H 0.098 0.902 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.136 0.864 26 H 0.104 0.896 27 H 0.129 0.871 28 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.350 -5.642 -1.348 5.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.204 6.204 3 C -0.203 4.203 4 C -0.132 4.132 5 C -0.170 4.170 6 C -0.148 4.148 7 S 0.265 5.735 8 C -0.189 4.189 9 C -0.027 4.027 10 N -0.182 5.182 11 C -0.036 4.036 12 C -0.213 4.213 13 C 0.156 3.844 14 C -0.418 4.418 15 H 0.115 0.885 16 C -0.158 4.158 17 N -0.360 5.360 18 Si 0.744 3.256 19 H -0.175 1.175 20 H -0.189 1.189 21 H -0.192 1.192 22 H 0.116 0.884 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.154 0.846 26 H 0.122 0.878 27 H 0.147 0.853 28 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.955 -4.229 -1.179 5.292 hybrid contribution 2.127 -0.871 0.010 2.299 sum -0.828 -5.100 -1.169 5.297 Atomic orbital electron populations 1.23032 0.79154 1.03431 1.01400 1.85811 1.20036 1.23565 1.91035 1.22460 0.94491 0.86809 1.16503 1.19091 0.91742 0.97130 1.05218 1.18536 0.93075 0.89892 1.15476 1.21848 0.93304 0.95447 1.04161 1.83876 1.09601 0.97923 1.82111 1.14457 0.88423 0.86042 1.29958 1.26079 0.92628 0.92667 0.91298 1.81053 1.10811 1.10498 1.15867 1.20112 0.90169 0.98194 0.95137 1.20618 0.98117 0.92245 1.10315 1.18505 0.88493 0.92401 0.84983 1.19952 0.92904 1.00753 1.28230 0.88514 1.26309 1.01974 0.94946 0.92540 1.69768 1.29545 1.19472 1.17175 0.86000 0.79158 0.80527 0.79960 1.17533 1.18900 1.19202 0.88389 0.92963 0.92975 0.84630 0.87841 0.85326 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.24 101.05 1.04 1.38 15 2 O -0.29 -5.10 10.56 -18.35 -0.19 -5.29 15 3 C -0.05 -0.90 7.18 29.14 0.21 -0.69 15 4 C -0.10 -2.15 9.78 -40.61 -0.40 -2.55 15 5 C -0.16 -3.68 6.02 -104.78 -0.63 -4.31 15 6 C -0.03 -0.67 6.33 -38.04 -0.24 -0.91 15 7 S 0.01 0.13 21.66 -107.50 -2.33 -2.20 15 8 C -0.18 -3.90 5.78 -106.33 -0.61 -4.51 15 9 C 0.28 6.27 15.00 -22.47 -0.34 5.93 15 10 N -0.50 -11.43 18.54 41.84 0.78 -10.65 15 11 C -0.01 -0.28 9.58 -39.77 -0.38 -0.66 15 12 C -0.19 -4.24 8.58 -39.50 -0.34 -4.58 15 13 C 0.16 3.72 5.75 -104.26 -0.60 3.12 15 14 C -0.39 -8.53 8.80 -38.14 -0.34 -8.86 15 15 H 0.10 1.99 7.51 -52.49 -0.39 1.60 15 16 C 0.07 1.38 5.12 -17.29 -0.09 1.29 15 17 N -0.74 -15.45 10.97 55.56 0.61 -14.84 15 18 Si 0.92 15.01 29.60 -169.99 -5.03 9.98 15 19 H -0.25 -4.11 7.11 56.52 0.40 -3.71 15 20 H -0.26 -4.26 7.11 56.52 0.40 -3.86 15 21 H -0.27 -4.34 7.11 56.52 0.40 -3.94 15 22 H 0.10 0.96 8.14 -51.93 -0.42 0.53 15 23 H 0.05 0.66 8.03 -51.93 -0.42 0.25 15 24 H 0.05 0.65 8.03 -51.93 -0.42 0.24 15 25 H 0.14 2.67 7.71 -52.49 -0.40 2.27 15 26 H 0.10 1.94 8.06 -52.49 -0.42 1.52 15 27 H 0.13 2.81 6.16 -52.49 -0.32 2.49 15 28 H 0.30 5.45 8.29 -40.82 -0.34 5.11 15 LS Contribution 272.73 15.07 4.11 4.11 Total: -1.00 -25.03 272.73 -6.71 -31.74 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -1.94 Total: 2.49 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -2.72 Total: -15.35 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 1.39 Total: -25.49 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.19 Total: -5.29 kcal Atomic # 14 Polarization: 15.01 SS G_CDS: -5.03 Total: 9.98 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -2.33 Total: -2.20 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -25.03 -6.71 -31.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396202266.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.725 kcal (2) G-P(sol) polarization free energy of solvation -25.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds