Wall clock time and date at job start Mon Mar 30 2020 06:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35551 * 116.99832 * 2 1 4 4 C 1.33688 * 124.72570 * 179.97438 * 3 2 1 5 5 C 1.39755 * 115.65658 * 180.02562 * 4 3 2 6 6 C 1.39727 * 112.78305 * 359.97438 * 5 4 3 7 7 S 1.75511 * 124.72734 * 0.02562 * 3 2 1 8 8 C 1.40838 * 119.86344 * 179.97438 * 6 5 4 9 9 C 1.43199 * 119.46388 * 180.02562 * 8 6 5 10 10 N 6.68401 * 86.72429 * 0.02562 * 2 1 3 11 11 C 1.40001 * 121.07490 * 0.02562 * 8 6 5 12 12 C 1.35862 * 121.08499 * 359.97438 * 11 8 6 13 13 C 1.40720 * 120.48112 * 0.24924 * 12 11 8 14 14 C 1.40108 * 120.27078 * 179.74740 * 13 12 11 15 15 H 1.08000 * 120.00476 * 205.12796 * 14 13 12 16 16 C 1.40206 * 119.99972 * 25.11866 * 14 13 12 17 17 N 1.30715 * 119.99865 * 17.87038 * 16 14 13 18 18 Si 1.86794 * 120.00379 * 197.86728 * 16 14 13 19 19 H 1.48497 * 109.47111 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47539 * 120.00148 * 18 16 14 21 21 H 1.48508 * 109.47290 * 240.00107 * 18 16 14 22 22 H 1.09001 * 109.46947 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47266 * 299.99995 * 1 2 3 24 24 H 1.08999 * 109.47149 * 60.00196 * 1 2 3 25 25 H 1.07995 * 122.17144 * 0.02562 * 4 3 2 26 26 H 1.08002 * 119.45796 * 179.97438 * 11 8 6 27 27 H 1.07994 * 119.76419 * 179.97438 * 12 11 8 28 28 H 0.97001 * 119.99918 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2078 0.0000 4 6 3.3691 1.3875 0.0005 5 6 3.7993 2.7172 0.0010 6 6 2.7402 3.6286 0.0002 7 16 1.2130 2.7535 0.0006 8 6 3.0053 5.0118 0.0011 9 6 1.9134 5.9383 0.0009 10 7 1.0471 6.6731 0.0030 11 6 4.3190 5.4958 0.0022 12 6 5.3795 4.6466 0.0029 13 6 5.1786 3.2538 -0.0027 14 6 6.2754 2.3820 -0.0072 15 1 6.1710 1.3848 -0.4084 16 6 7.5087 2.8044 0.5089 17 7 7.5653 3.8460 1.2966 18 14 9.0709 1.8786 0.0709 19 1 8.7388 0.7453 -0.8293 20 1 10.0145 2.7969 -0.6159 21 1 9.7014 1.3573 1.3104 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 4.0618 0.5590 0.0005 26 1 4.4923 6.5619 0.0024 27 1 6.3839 5.0432 0.0033 28 1 8.4185 4.1379 1.6540 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396202266.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:48 Heat of formation + Delta-G solvation = 11.412883 kcal Electronic energy + Delta-G solvation = -15856.782048 eV Core-core repulsion = 13156.738959 eV Total energy + Delta-G solvation = -2700.043089 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.20526 -39.45615 -37.34837 -36.21721 -34.95549 -31.97767 -29.97278 -28.26879 -27.10029 -24.51524 -23.48041 -21.53697 -20.08729 -19.54909 -18.04629 -17.28020 -16.79434 -16.71796 -16.69711 -15.39192 -15.16703 -14.84188 -14.73743 -14.20869 -13.86154 -13.76706 -13.57572 -13.42306 -13.01208 -12.95547 -12.79812 -12.45506 -12.23775 -11.94417 -11.66539 -11.45714 -11.32753 -11.00770 -10.05081 -9.04549 -8.93193 -8.58621 -6.46795 0.17020 0.34529 0.48863 0.92979 1.42310 1.47186 1.61748 1.70631 1.91121 2.14621 2.20616 2.40308 2.73535 3.47878 3.54052 4.30243 4.30611 4.36462 4.46081 4.64515 4.69590 4.89762 4.98092 5.10948 5.22090 5.38226 5.65951 5.79993 5.87954 5.99415 6.19794 6.39037 6.55976 6.68296 6.83689 7.96420 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.018354 B = 0.007800 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.225356 B = 3588.934807 C = 5027.666771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.297 6.297 3 C -0.030 4.030 4 C -0.129 4.129 5 C -0.176 4.176 6 C -0.056 4.056 7 S 0.034 5.966 8 C -0.194 4.194 9 C 0.291 3.709 10 N -0.518 5.518 11 C -0.012 4.012 12 C -0.205 4.205 13 C 0.136 3.864 14 C -0.406 4.406 15 H 0.102 0.898 16 C 0.037 3.963 17 N -0.762 5.762 18 Si 0.992 3.008 19 H -0.252 1.252 20 H -0.258 1.258 21 H -0.263 1.263 22 H 0.136 0.864 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.142 0.858 26 H 0.123 0.877 27 H 0.127 0.873 28 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.051 -6.892 -1.454 7.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.212 6.212 3 C -0.188 4.188 4 C -0.158 4.158 5 C -0.183 4.183 6 C -0.173 4.173 7 S 0.293 5.707 8 C -0.206 4.206 9 C -0.018 4.018 10 N -0.198 5.198 11 C -0.035 4.035 12 C -0.226 4.226 13 C 0.130 3.870 14 C -0.430 4.430 15 H 0.120 0.880 16 C -0.187 4.187 17 N -0.383 5.383 18 Si 0.810 3.190 19 H -0.175 1.175 20 H -0.182 1.182 21 H -0.187 1.187 22 H 0.154 0.846 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.160 0.840 26 H 0.141 0.859 27 H 0.144 0.856 28 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.685 -5.469 -1.280 6.225 hybrid contribution 1.974 -0.590 0.077 2.061 sum -0.711 -6.058 -1.203 6.217 Atomic orbital electron populations 1.23429 0.76514 1.06210 1.01860 1.85819 1.22635 1.22257 1.90522 1.22593 0.94414 0.87603 1.14153 1.19157 0.92614 0.96815 1.07185 1.18768 0.93241 0.90730 1.15551 1.22110 0.94679 0.95784 1.04771 1.83657 1.08098 0.97414 1.81564 1.14548 0.88663 0.86157 1.31262 1.26076 0.92417 0.92386 0.90884 1.81046 1.11120 1.10854 1.16785 1.20286 0.89743 0.99124 0.94332 1.20629 0.98208 0.92316 1.11474 1.18836 0.89213 0.93086 0.85852 1.20256 0.93655 1.00989 1.28138 0.88035 1.27094 1.04220 0.95558 0.91836 1.69769 1.31109 1.20197 1.17203 0.84971 0.75156 0.79173 0.79655 1.17487 1.18239 1.18708 0.84596 0.92526 0.92395 0.84038 0.85938 0.85561 0.88052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.24 113.37 1.16 1.52 15 2 O -0.30 -9.88 10.56 -88.56 -0.93 -10.82 15 3 C -0.03 -1.14 7.18 66.79 0.48 -0.66 15 4 C -0.13 -5.39 9.78 21.60 0.21 -5.18 15 5 C -0.18 -8.02 6.02 -19.96 -0.12 -8.14 15 6 C -0.06 -2.50 6.33 23.27 0.15 -2.35 15 7 S 0.03 1.32 21.66 -56.49 -1.22 0.10 15 8 C -0.19 -8.63 5.78 -20.97 -0.12 -8.75 15 9 C 0.29 12.87 15.00 88.33 1.32 14.20 15 10 N -0.52 -23.36 18.54 19.00 0.35 -23.00 15 11 C -0.01 -0.53 9.58 22.15 0.21 -0.31 15 12 C -0.21 -9.21 8.58 22.32 0.19 -9.02 15 13 C 0.14 6.33 5.75 -19.63 -0.11 6.22 15 14 C -0.41 -17.64 8.80 23.20 0.20 -17.43 15 15 H 0.10 4.18 7.51 -2.91 -0.02 4.16 15 16 C 0.04 1.47 5.12 85.34 0.44 1.91 15 17 N -0.76 -31.53 10.97 21.87 0.24 -31.29 15 18 Si 0.99 29.55 29.60 68.60 2.03 31.58 15 19 H -0.25 -7.43 7.11 99.48 0.71 -6.73 15 20 H -0.26 -7.42 7.11 99.48 0.71 -6.71 15 21 H -0.26 -7.61 7.11 99.48 0.71 -6.91 15 22 H 0.14 2.14 8.14 -2.39 -0.02 2.12 15 23 H 0.06 1.29 8.03 -2.39 -0.02 1.27 15 24 H 0.06 1.30 8.03 -2.39 -0.02 1.28 15 25 H 0.14 5.59 7.71 -2.91 -0.02 5.57 15 26 H 0.12 4.59 8.06 -2.91 -0.02 4.57 15 27 H 0.13 5.61 6.16 -2.91 -0.02 5.59 15 28 H 0.31 11.07 8.29 -92.71 -0.77 10.30 15 Total: -1.00 -52.58 272.73 5.69 -46.89 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 1.21 Total: 14.52 kcal Atomic # 6 Polarization: -32.01 SS G_CDS: 4.01 Total: -27.99 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.59 Total: -54.29 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -0.93 Total: -10.82 kcal Atomic # 14 Polarization: 29.55 SS G_CDS: 2.03 Total: 31.58 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -1.22 Total: 0.10 kcal Total: -52.58 5.69 -46.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396202266.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.306 kcal (2) G-P(sol) polarization free energy of solvation -52.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds