Wall clock time and date at job start Mon Mar 30 2020 06:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35600 * 116.99816 * 2 1 4 4 C 1.37794 * 119.13173 * 0.02562 * 3 2 1 5 5 C 1.39560 * 120.49400 * 179.97438 * 4 3 2 6 6 C 1.43202 * 120.52000 * 179.97438 * 5 4 3 7 7 N 5.82622 * 80.32921 * 359.97438 * 2 1 3 8 8 C 1.46357 * 118.95566 * 359.97438 * 5 4 3 9 9 C 1.40102 * 120.37107 * 179.97438 * 8 5 4 10 10 H 1.07996 * 120.00315 * 316.34279 * 9 8 5 11 11 C 1.40217 * 119.99944 * 136.35180 * 9 8 5 12 12 N 1.30710 * 120.00456 * 152.54508 * 11 9 8 13 13 Si 1.86800 * 119.99564 * 332.53844 * 11 9 8 14 14 H 1.48507 * 109.47128 * 94.57247 * 13 11 9 15 15 H 1.48503 * 109.47426 * 214.57468 * 13 11 9 16 16 H 1.48502 * 109.47261 * 334.57390 * 13 11 9 17 17 C 1.42332 * 119.25137 * 359.97438 * 8 5 4 18 18 S 1.75953 * 130.19851 * 179.97438 * 17 8 5 19 19 C 1.75293 * 92.12929 * 180.02562 * 18 17 8 20 20 C 1.31994 * 111.24962 * 359.72613 * 19 18 17 21 21 C 1.39183 * 119.94045 * 0.02562 * 17 8 5 22 22 H 1.09003 * 109.47026 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47452 * 299.99942 * 1 2 3 24 24 H 1.08999 * 109.47064 * 60.00522 * 1 2 3 25 25 H 1.08000 * 119.75424 * 359.97438 * 4 3 2 26 26 H 0.96997 * 120.00210 * 179.97438 * 12 11 9 27 27 H 1.08007 * 124.37999 * 180.02562 * 19 18 17 28 28 H 1.07996 * 122.52502 * 180.27697 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2767 2.3523 0.0005 5 6 1.8805 3.6105 0.0011 6 6 1.0829 4.7999 0.0011 7 7 0.4503 5.7434 -0.0026 8 6 3.3416 3.6953 0.0017 9 6 3.9787 4.9430 0.0017 10 1 3.6220 5.7316 -0.6442 11 6 5.0798 5.1680 0.8402 12 7 5.9861 6.0488 0.5069 13 14 5.2512 4.2088 2.4340 14 1 6.1074 3.0171 2.2049 15 1 5.8736 5.0740 3.4681 16 1 3.9090 3.7725 2.8960 17 6 4.1078 2.4958 0.0022 18 16 5.8518 2.2623 0.0023 19 6 5.6838 0.5174 0.0023 20 6 4.4135 0.1591 0.0081 21 6 3.4654 1.2611 0.0016 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 0.1994 2.2748 0.0005 26 1 6.7476 6.2047 1.0872 27 1 6.5127 -0.1751 0.0028 28 1 4.1018 -0.8749 0.0134 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396202480.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:48 Heat of formation + Delta-G solvation = 16.017269 kcal Electronic energy + Delta-G solvation = -16408.923083 eV Core-core repulsion = 13709.079655 eV Total energy + Delta-G solvation = -2699.843428 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.76698 -38.56074 -37.42800 -36.17998 -34.90227 -31.90011 -30.46936 -28.34403 -26.81514 -24.80787 -23.09500 -21.49435 -20.29934 -19.61243 -17.62419 -17.32007 -17.22860 -16.46436 -16.37920 -15.73613 -15.13192 -14.93360 -14.68200 -14.45909 -14.19558 -14.11932 -13.53658 -13.36806 -13.31817 -12.98539 -12.82996 -12.31530 -12.14865 -12.02787 -11.92892 -11.32582 -11.27140 -11.03697 -9.77342 -9.16615 -9.09974 -8.35252 -6.53847 -0.33626 0.57528 0.77128 1.10530 1.31190 1.34661 1.41411 1.48754 1.94936 2.09247 2.26225 2.51308 2.74296 3.21959 3.40574 3.82462 4.26826 4.40717 4.49666 4.55739 4.60649 4.75410 4.86704 5.01328 5.04770 5.16400 5.36315 5.41267 5.63426 5.74620 5.99676 6.33980 6.49378 6.75665 6.84631 7.95997 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.017262 B = 0.011871 C = 0.007869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.663511 B = 2358.165296 C = 3557.638116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.326 6.326 3 C 0.050 3.950 4 C -0.109 4.109 5 C -0.157 4.157 6 C 0.306 3.694 7 N -0.514 5.514 8 C 0.136 3.864 9 C -0.478 4.478 10 H 0.063 0.937 11 C 0.079 3.921 12 N -0.799 5.799 13 Si 0.862 3.138 14 H -0.170 1.170 15 H -0.259 1.259 16 H -0.264 1.264 17 C -0.200 4.200 18 S 0.072 5.928 19 C -0.193 4.193 20 C -0.122 4.122 21 C -0.045 4.045 22 H 0.122 0.878 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.145 0.855 26 H 0.302 0.698 27 H 0.201 0.799 28 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.116 -14.650 1.820 14.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.241 6.241 3 C 0.003 3.997 4 C -0.132 4.132 5 C -0.167 4.167 6 C -0.004 4.004 7 N -0.194 5.194 8 C 0.128 3.872 9 C -0.506 4.506 10 H 0.081 0.919 11 C -0.143 4.143 12 N -0.422 5.422 13 Si 0.681 3.319 14 H -0.093 1.093 15 H -0.183 1.183 16 H -0.188 1.188 17 C -0.316 4.316 18 S 0.336 5.664 19 C -0.327 4.327 20 C -0.152 4.152 21 C -0.055 4.055 22 H 0.140 0.860 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.163 0.837 26 H 0.114 0.886 27 H 0.218 0.782 28 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.568 -12.278 1.812 12.424 hybrid contribution -1.189 -0.350 0.352 1.288 sum -0.621 -12.629 2.164 12.828 Atomic orbital electron populations 1.23236 0.77584 1.05133 1.01506 1.85861 1.22236 1.25913 1.90110 1.18021 0.89193 0.84217 1.08231 1.20638 0.99627 0.89656 1.03233 1.16612 0.89860 0.86906 1.23288 1.25639 0.91253 0.92331 0.91137 1.81013 1.12468 1.10740 1.15164 1.17815 0.89115 0.90789 0.89461 1.19121 1.10921 0.98436 1.22093 0.91903 1.26528 0.91726 0.94870 1.01201 1.69684 1.07216 1.28598 1.36694 0.87039 0.82650 0.83430 0.78744 1.09283 1.18330 1.18773 1.22615 0.96732 0.95702 1.16532 1.84428 1.02092 1.02274 1.77561 1.25574 1.01346 0.98332 1.07438 1.21051 0.90949 0.99429 1.03756 1.18859 0.91584 0.92207 1.02853 0.85968 0.92695 0.92648 0.83699 0.88637 0.78189 0.81621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.78 113.37 1.11 1.53 15 2 O -0.33 -9.87 10.33 -89.10 -0.92 -10.79 15 3 C 0.05 1.84 6.76 23.14 0.16 2.00 15 4 C -0.11 -4.09 8.67 22.48 0.19 -3.89 15 5 C -0.16 -7.10 5.94 -19.60 -0.12 -7.22 15 6 C 0.31 14.48 14.54 88.33 1.28 15.76 15 7 N -0.51 -25.13 18.54 19.00 0.35 -24.78 15 8 C 0.14 6.61 4.79 -19.69 -0.09 6.51 15 9 C -0.48 -25.51 8.58 23.20 0.20 -25.31 15 10 H 0.06 3.74 7.97 -2.91 -0.02 3.72 15 11 C 0.08 3.96 4.58 85.34 0.39 4.35 15 12 N -0.80 -40.45 13.92 21.88 0.30 -40.14 15 13 Si 0.86 36.46 25.06 68.60 1.72 38.18 15 14 H -0.17 -6.29 5.33 97.89 0.52 -5.77 15 15 H -0.26 -10.34 7.11 99.48 0.71 -9.63 15 16 H -0.26 -11.98 7.11 99.48 0.71 -11.27 15 17 C -0.20 -8.68 4.97 23.52 0.12 -8.56 15 18 S 0.07 2.72 18.01 -56.49 -1.02 1.70 15 19 C -0.19 -5.53 11.04 66.92 0.74 -4.79 15 20 C -0.12 -3.74 10.22 23.20 0.24 -3.50 15 21 C -0.04 -1.72 6.03 -20.24 -0.12 -1.84 15 22 H 0.12 1.77 8.14 -2.39 -0.02 1.75 15 23 H 0.05 1.11 7.60 -2.39 -0.02 1.09 15 24 H 0.05 1.11 7.60 -2.39 -0.02 1.09 15 25 H 0.15 4.51 6.11 -2.91 -0.02 4.49 15 26 H 0.30 13.60 8.29 -92.71 -0.77 12.83 15 27 H 0.20 3.92 8.06 -2.91 -0.02 3.90 15 28 H 0.17 4.09 8.06 -2.91 -0.02 4.07 15 Total: -1.00 -60.07 263.11 5.55 -54.52 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 1.02 Total: 6.26 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 4.09 Total: -24.95 kcal Atomic # 7 Polarization: -65.58 SS G_CDS: 0.66 Total: -64.92 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -0.92 Total: -10.79 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 1.72 Total: 38.18 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -1.02 Total: 1.70 kcal Total: -60.07 5.55 -54.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396202480.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.537 kcal (2) G-P(sol) polarization free energy of solvation -60.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds