Wall clock time and date at job start Mon Mar 30 2020 06:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35922 * 116.99550 * 2 1 4 4 C 1.36061 * 119.61847 * 359.97438 * 3 2 1 5 5 C 1.41116 * 120.11827 * 180.02562 * 4 3 2 6 6 C 1.41259 * 120.02267 * 179.97438 * 5 4 3 7 7 H 1.08004 * 119.99802 * 154.63552 * 6 5 4 8 8 C 1.39825 * 119.99743 * 334.62833 * 6 5 4 9 9 N 1.30905 * 120.00256 * 342.47766 * 8 6 5 10 10 Si 1.86809 * 119.99850 * 162.47159 * 8 6 5 11 11 H 1.48498 * 109.46765 * 60.00183 * 10 8 6 12 12 H 1.48488 * 109.47308 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46941 * 300.00434 * 10 8 6 14 14 C 1.39879 * 119.95451 * 359.97438 * 5 4 3 15 15 C 1.40881 * 120.07158 * 359.97438 * 14 5 4 16 16 C 1.45045 * 129.00530 * 180.02562 * 15 14 5 17 17 C 1.33609 * 114.62522 * 179.28797 * 16 15 14 18 18 C 1.43191 * 124.36042 * 180.10751 * 17 16 15 19 19 N 6.46096 * 142.57542 * 359.59460 * 3 1 2 20 20 S 1.75257 * 111.27079 * 0.61942 * 17 16 15 21 21 C 1.40254 * 119.01780 * 359.76738 * 15 14 5 22 22 H 1.09001 * 109.46470 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47146 * 299.99839 * 1 2 3 24 24 H 1.08996 * 109.47044 * 60.00369 * 1 2 3 25 25 H 1.07998 * 119.93495 * 359.97438 * 4 3 2 26 26 H 0.97010 * 119.99832 * 179.97438 * 9 8 6 27 27 H 1.08000 * 119.96728 * 179.97438 * 14 5 4 28 28 H 1.08002 * 122.68558 * 359.95271 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2973 2.3472 -0.0005 5 6 1.9269 3.6101 -0.0011 6 6 1.1476 4.7883 -0.0022 7 1 1.5545 5.7053 0.3981 8 6 -0.1504 4.7675 -0.5216 9 7 -0.5267 3.7877 -1.3040 10 14 -1.3477 6.1377 -0.0988 11 1 -0.7969 7.4366 -0.5619 12 1 -2.6478 5.8835 -0.7697 13 1 -1.5503 6.1818 1.3716 14 6 3.3231 3.6945 -0.0005 15 6 4.1013 2.5202 0.0011 16 6 5.5452 2.3818 0.0024 17 6 5.9835 1.1197 0.0189 18 6 7.3652 0.7441 0.0256 19 7 8.4615 0.4460 0.0278 20 16 4.6493 -0.0167 0.0168 21 6 3.4548 1.2756 0.0071 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.2193 2.2822 -0.0014 26 1 -1.4274 3.7731 -1.6640 27 1 3.8052 4.6610 -0.0014 28 1 6.2125 3.2310 0.0015 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396202774.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:08 Heat of formation + Delta-G solvation = 11.541020 kcal Electronic energy + Delta-G solvation = -15881.085554 eV Core-core repulsion = 13181.048021 eV Total energy + Delta-G solvation = -2700.037533 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.72440 -38.87904 -37.83429 -36.48118 -34.39649 -31.45571 -30.18827 -28.41667 -27.13697 -25.06733 -23.05471 -21.83829 -19.98386 -19.17124 -18.09976 -17.15418 -16.66037 -16.54826 -16.48077 -15.97124 -15.20408 -15.00413 -14.85221 -14.23399 -14.02502 -13.88226 -13.77262 -13.29693 -12.95554 -12.83918 -12.63673 -12.29155 -12.18070 -11.97259 -11.84523 -11.45706 -11.32760 -10.81053 -9.91334 -9.25177 -8.75880 -8.23558 -6.37605 -0.42533 0.36634 0.78525 1.19827 1.31254 1.43876 1.51600 1.55370 1.82535 2.20430 2.22584 2.56243 2.63476 2.75505 3.58391 4.20795 4.40934 4.42804 4.47534 4.58304 4.72259 4.78975 4.89829 4.97865 5.19519 5.30585 5.53207 5.66515 5.95120 6.07470 6.26609 6.39656 6.64252 6.85869 6.90263 8.26547 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.028714 B = 0.006124 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.912064 B = 4571.263435 C = 5456.071507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.340 6.340 3 C 0.150 3.850 4 C -0.222 4.222 5 C 0.111 3.889 6 C -0.482 4.482 7 H 0.087 0.913 8 C 0.041 3.959 9 N -0.815 5.815 10 Si 0.980 3.020 11 H -0.260 1.260 12 H -0.269 1.269 13 H -0.260 1.260 14 C -0.234 4.234 15 C -0.031 4.031 16 C -0.032 4.032 17 C -0.132 4.132 18 C 0.309 3.691 19 N -0.438 5.438 20 S 0.125 5.875 21 C -0.260 4.260 22 H 0.124 0.876 23 H 0.049 0.951 24 H 0.048 0.952 25 H 0.135 0.865 26 H 0.292 0.708 27 H 0.117 0.883 28 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.812 -1.994 1.830 2.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.255 6.255 3 C 0.102 3.898 4 C -0.244 4.244 5 C 0.107 3.893 6 C -0.511 4.511 7 H 0.105 0.895 8 C -0.176 4.176 9 N -0.440 5.440 10 Si 0.801 3.199 11 H -0.184 1.184 12 H -0.194 1.194 13 H -0.184 1.184 14 C -0.257 4.257 15 C -0.037 4.037 16 C -0.070 4.070 17 C -0.251 4.251 18 C -0.006 4.006 19 N -0.116 5.116 20 S 0.389 5.611 21 C -0.376 4.376 22 H 0.143 0.857 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.152 0.848 26 H 0.103 0.897 27 H 0.135 0.865 28 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.715 -4.377 1.682 4.743 hybrid contribution -1.314 2.296 -0.063 2.646 sum -0.599 -2.081 1.619 2.703 Atomic orbital electron populations 1.23094 0.77331 1.04501 1.01298 1.85898 1.22704 1.27452 1.89404 1.17874 0.89189 0.84679 0.98085 1.21236 1.00328 0.91441 1.11375 1.17523 0.91740 0.92992 0.87025 1.19823 0.98515 0.96857 1.35902 0.89509 1.26718 0.99900 0.99287 0.91652 1.69861 1.20522 1.32082 1.21558 0.85261 0.76720 0.78231 0.79687 1.18422 1.19366 1.18445 1.20968 0.92696 0.95437 1.16593 1.18818 0.91468 0.92391 1.01043 1.21415 0.93400 0.96197 0.95984 1.19222 0.89760 0.98349 1.17721 1.24315 0.90918 0.92966 0.92425 1.81243 1.11440 1.08171 1.10770 1.83503 0.91372 1.05519 1.80754 1.21697 0.93980 0.96855 1.25058 0.85742 0.93226 0.93354 0.84795 0.89710 0.86518 0.80720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 9.80 113.37 1.11 2.14 15 2 O -0.34 -13.60 10.47 -92.68 -0.97 -14.57 15 3 C 0.15 6.70 6.68 22.45 0.15 6.85 15 4 C -0.22 -10.53 7.58 22.47 0.17 -10.36 15 5 C 0.11 5.40 5.55 -21.43 -0.12 5.28 15 6 C -0.48 -23.09 9.02 23.40 0.21 -22.88 15 7 H 0.09 3.96 7.90 -2.91 -0.02 3.93 15 8 C 0.04 1.84 5.13 85.22 0.44 2.28 15 9 N -0.82 -37.71 10.98 21.81 0.24 -37.47 15 10 Si 0.98 33.95 29.59 68.60 2.03 35.98 15 11 H -0.26 -8.82 7.11 99.48 0.71 -8.12 15 12 H -0.27 -8.89 7.11 99.48 0.71 -8.18 15 13 H -0.26 -8.88 7.11 99.48 0.71 -8.17 15 14 C -0.23 -10.32 9.84 23.31 0.23 -10.09 15 15 C -0.03 -1.26 6.02 -20.40 -0.12 -1.39 15 16 C -0.03 -1.03 10.25 22.97 0.24 -0.80 15 17 C -0.13 -4.23 6.15 22.46 0.14 -4.09 15 18 C 0.31 9.54 15.73 88.33 1.39 10.93 15 19 N -0.44 -14.33 18.54 19.00 0.35 -13.97 15 20 S 0.13 4.37 23.12 -56.49 -1.31 3.06 15 21 C -0.26 -10.98 6.46 23.44 0.15 -10.83 15 22 H 0.12 2.93 8.14 -2.39 -0.02 2.91 15 23 H 0.05 1.56 7.63 -2.39 -0.02 1.55 15 24 H 0.05 1.65 7.63 -2.39 -0.02 1.63 15 25 H 0.13 6.34 4.28 -2.91 -0.01 6.33 15 26 H 0.29 12.17 8.30 -92.70 -0.77 11.40 15 27 H 0.12 4.72 8.06 -2.91 -0.02 4.69 15 28 H 0.18 4.46 8.06 -2.91 -0.02 4.44 15 Total: -1.00 -53.04 272.22 5.54 -47.50 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 1.21 Total: 12.41 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 3.98 Total: -32.95 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 0.59 Total: -51.44 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.97 Total: -14.57 kcal Atomic # 14 Polarization: 33.95 SS G_CDS: 2.03 Total: 35.98 kcal Atomic # 16 Polarization: 4.37 SS G_CDS: -1.31 Total: 3.06 kcal Total: -53.04 5.54 -47.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396202774.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.044 kcal (2) G-P(sol) polarization free energy of solvation -53.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds